FC931355

Overview
NameFC931355
Unique NameFC931355
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931355 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.442e-26
Identity = 77/196 (39.29%), Postives = 106/196 (54.08%), Query Frame = 2
Query:   47 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILDT---NVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLK 625
            V  K   L  +  G P +SD ++ T    +++P      +LL+ L+LS DPYMR    +L         K G  + G  V++V++S +  +    +V   + W     I   + L K+L      +PLS   G +GMPGLTAY GL E+   K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EK+  LK
Sbjct:    2 VKAKSWTLKKHFQGKPTQSDFELKT----VELPPLKNGEVLLEALFLSVDPYMRIASKRL---------KEGAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTT-HFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK 183          

HSP 2 Score: 23.8682 bits (50), Expect = 9.442e-26
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  625 EQFGFDDAFNYK 660
            +Q GFD AFNYK
Sbjct:  183 KQIGFDAAFNYK 194          
BLAST of FC931355 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.519e-25
Identity = 75/195 (38.46%), Postives = 102/195 (52.31%), Query Frame = 2
Query:   47 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQL--LIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLK 625
            V  K   L  +  G+P  SD ++ T  +    P      +LL+ L+L+ DPYMR    +L         K G+ + G  V+KV++S +    K  +V     W   S+     L  L+      +PLS   G +GMPGLTAY GL E+   K GE V V+AA+GAVG +VGQ AKL GC VVG+ GS EKV  L+
Sbjct:    2 VRTKTWTLKKHFVGYPTNSDFELKTAEL----PPLKNGEVLLEALFLTVDPYMRVAAKRL---------KEGDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQ 183          
BLAST of FC931355 vs. ExPASy Swiss-Prot
Match: PTGR2_BOVIN (Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.989e-17
Identity = 58/161 (36.02%), Postives = 86/161 (53.42%), Query Frame = 2
Query:  170 LKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILDTNVP--LSYYTGILGMPGLTAYGGLYELSSPKKG--EYVYVSAASGAVGQLVGQFAKLVGC-HVVGSAGSKEKVDLLKNSLG 637
            ++ LYLS DPYMR RM++     ++  ++  + + G GV  + +S H N+ K D V       +  +I    +L K+    V   LSY+ G +GMPGLT+  G+ E      G  + + VS A+GA G L GQ  +L+GC  VVG  G+ EK   L + LG
Sbjct:   41 VRTLYLSVDPYMRCRMNEDTGSDYITPWQLSQVVDGGGVGIIEESKHTNFMKGDFVTSFYWPWQTKVILDGNILEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHITAGSNQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGTPEKCLFLTSELG 201          
BLAST of FC931355 vs. ExPASy Swiss-Prot
Match: PTGR2_PONAB (Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.872e-17
Identity = 58/170 (34.12%), Postives = 87/170 (51.18%), Query Frame = 2
Query:  170 LKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILDTNVP--LSYYTGILGMPGLTAYGGLYELSSPKKG--EYVYVSAASGAVGQLVGQFAKLVGC-HVVGSAGSKEKVDLLKNSLGLMTLLTIRK 664
            ++ LYLS DPYMR RM++     ++  ++  + + G G+  + +S H N  K D V       +  +I     L K+    V   LSY+ G +GMPGLT+  G+ E      G  + + VS A+GA G + GQ   L+GC  VVG  G+ EK  LL + LG    +  +K
Sbjct:   41 VRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHLLGCSRVVGICGTHEKCVLLTSELGFDAAINYKK 210          
BLAST of FC931355 vs. ExPASy Swiss-Prot
Match: PTGR2_HUMAN (Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.872e-16
Identity = 57/170 (33.53%), Postives = 86/170 (50.59%), Query Frame = 2
Query:  170 LKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILDTNVP--LSYYTGILGMPGLTAYGGLYELSSPKKG--EYVYVSAASGAVGQLVGQFAKLVGC-HVVGSAGSKEKVDLLKNSLGLMTLLTIRK 664
            ++ LYLS DPYMR RM++     ++  ++  + + G G+  + +S H N  K D V       +  +I     L K+    V   LSY+ G +GMPGLT+  G+ E      G  + + VS A+GA G + GQ    +GC  VVG  G+ EK  LL + LG    +  +K
Sbjct:   41 VRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKK 210          
BLAST of FC931355 vs. ExPASy Swiss-Prot
Match: PTGR2_MOUSE (Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 57/167 (34.13%), Postives = 86/167 (51.50%), Query Frame = 2
Query:  170 LKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGL-TSWEECSLIQ-------SPQLLIKILDTNVPLSYYTGILGMPGLTAYGGLYELS--SPKKGEYVYVSAASGAVGQLVGQFAKLVGC-HVVGSAGSKEKVDLLKNSLG 637
            ++ LYLS DPYMR +M++     ++A ++  +   G G+  V +S H    K D V      W+  +++         PQL+      +  LSY+ G +GMPGLT+  G+ E    S    + + VS A+GA G L GQ   L+GC  VVG  G++EK   L + LG
Sbjct:   41 VRTLYLSVDPYMRCKMNEDTGTDYLAPWQLAQVADGGGIGVVEESKHQKLTKGDFVTSFYWPWQTKAILDGNGLEKVDPQLV------DGHLSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELG 201          
BLAST of FC931355 vs. ExPASy Swiss-Prot
Match: PTGR2_RAT (Prostaglandin reductase 2 OS=Rattus norvegicus GN=Ptgr2 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15
Identity = 61/195 (31.28%), Postives = 96/195 (49.23%), Query Frame = 2
Query:   86 GFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGL-TSWEECSLIQ-------SPQLLIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKG--EYVYVSAASGAVGQLVGQFAKLVGC-HVVGSAGSKEKVDLLKNSLG 637
            G P   + ++   S+   + EG    + ++ LYLS DPYMR +M++     ++A ++  +   G G+  + +S H    K D V      W+  +++         PQL+      +  LSY+ G +GMPGLT+  G+ E      G  + + VS A+GA G L GQ   L+GC  VVG  G+ EK   L + LG
Sbjct:   16 GNPVAENFRVEEVSLPDTINEGQ---VRVRTLYLSVDPYMRCKMNEETGADYLAPWQLAQVADGGGLGVIEESKHQKLAKGDFVTSFYWPWQTKAILDGNGLEKVDPQLV------DGHLSYFLGAIGMPGLTSLIGVQEKGHVSAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTHEKCLFLTSELG 201          
The following BLAST results are available for this feature:
BLAST of FC931355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PTGR1_CAVPO9.442e-2639.29Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]
PTGR1_HUMAN1.519e-2538.46Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]
PTGR2_BOVIN1.989e-1736.02Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 P... [more]
PTGR2_PONAB9.872e-1734.12Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2... [more]
PTGR2_HUMAN2.872e-1633.53Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2... [more]
PTGR2_MOUSE1.862e-1534.13Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2... [more]
PTGR2_RAT2.432e-1531.28Prostaglandin reductase 2 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34104C02EF PostHarvP1 Citrus clementina cDNA clone C34104C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931355 ID=FC931355; Name=FC931355; organism=Citrus clementina; type=EST; length=685bp
GATCCAAAAACAAAATCTACATAAAAAAATGGCGGGTGAAGAAGCAGTGA
GCAACAAGCAGGTGATTCTGAGCGACTACGTGACAGGGTTTCCAAAAGAA
TCAGACATGAAGATAATAACAGGCTCAATAAACCTGAAGGTGCCAGAGGG
CTCAAAAGACACATTGCTTTTGAAGAATCTTTATCTTTCCTGTGATCCTT
ACATGAGAGGACGTATGAGCAAGCTTGATAAGCCTTCGTTTGTTGCCTCC
TTCAAGCCTGGCGAGCCTTTGAGCGGATATGGAGTGTCCAAAGTGTTGGA
TTCCACACATCCAAATTATAAGAAAGATGACTTGGTCTGGGGCTTAACCA
GTTGGGAGGAGTGCAGTCTCATCCAATCACCACAACTTCTGATTAAAATT
CTGGATACAAATGTGCCTCTGTCATACTATACTGGGATTCTTGGTATGCC
TGGTTTGACTGCATATGGTGGTTTATATGAGCTTTCCTCTCCTAAGAAAG
GAGAGTATGTCTATGTATCTGCAGCATCTGGAGCTGTTGGCCAGCTTGTT
GGGCAATTTGCGAAGTTGGTTGGTTGCCATGTTGTTGGAAGTGCCGGAAG
CAAAGAAAAGGTCGATCTGTTGAAGAACAGTTTGGGTTTGATGACGCTTT
TAACTATAAGGAAGACCAGACTTAGATGCAGCTCT
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