FC931356

Overview
NameFC931356
Unique NameFC931356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14052 contig Ccv1_Contig14052:112..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: MEE39_ARATH (Probable LRR receptor-like serine/threonine-protein kinase MEE39 OS=Arabidopsis thaliana GN=MEE39 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.988e-29
Identity = 71/162 (43.83%), Postives = 99/162 (61.11%), Query Frame = 2
Query:  227 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLS 709
            E+ E+T+N      +GEG +G VY+G L      A+K L   S Q  +EF A+V ++ R+ H N V L+GYC +     L YE+ SNG LH  L G+ G      G VL+W  R++IA+ AA GLEYLH    P ++HRD+KS+N+L+ ++  AKIADF LS
Sbjct:  560 EVMEMTKNL--QRPLGEGGFGVVYHGDLNGSEQVAVKLLSQTSAQGYKEFKAEVELLLRVHHINLVNLVGYCDEQDHFALIYEYMSNGDLHQHLSGKHG------GSVLNWGTRLQIAIEAALGLEYLHTGCKPAMVHRDVKSTNILLDEEFKAKIADFGLS 713          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: Y5181_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.305e-28
Identity = 65/166 (39.16%), Postives = 103/166 (62.05%), Query Frame = 2
Query:  227 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAP 721
            E+  +T NF    ++G+G +G VYYG +      A+K L  +S Q  ++F A+V ++ R+ H+N V L+GYC +G    L YE+ +NG L + + G++G      G +L+W  R+KIA+ AA+GLEYLH    P ++HRD+K++N+L+ +    K+ADF LS   P
Sbjct:  571 EVLTMTNNF--QKILGKGGFGIVYYGSVNGTEQVAVKMLSHSSAQGYKQFKAEVELLLRVHHKNLVGLVGYCEEGDKLALIYEYMANGDLDEHMSGKRG------GSILNWGTRLKIALEAAQGLEYLHNGCKPLMVHRDVKTTNILLNEHFDTKLADFGLSRSFP 728          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.305e-28
Identity = 66/175 (37.71%), Postives = 110/175 (62.86%), Query Frame = 2
Query:  215 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD---ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSL--HDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPD 724
            IS+  L+ +T NF ++ ++G G +G VY G L  G   A+K+++    + +   EF ++++++++++H + V LLGYC+DG  ++L YE+   G+L  H      +G+K     P+L W+QR+ +A+  A+G+EYLH  A    IHRD+K SN+L+ DD  AK+ADF L   AP+
Sbjct:  576 ISIQVLRSVTNNFSSDNILGSGGFGVVYKGELHDGTKIAVKRMENGVIAGKGFAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTLSRHLFEWSEEGLK-----PLL-WKQRLTLALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPE 744          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: RKF3_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana GN=RKF3 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.305e-28
Identity = 70/175 (40.00%), Postives = 100/175 (57.14%), Query Frame = 2
Query:  218 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCV-----DGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPD 724
            S DE+K+ T NF  + +IG G YG V+ G L  G   A K+  + S   D  F  +V +++ ++H N + L GYC      +G  R++  +  SNGSLHD L G    +       L+W  R +IA+G A+GL YLH  A P IIHRDIK+SN+L+ +   AK+ADF L+   P+
Sbjct:  272 SFDEIKKATNNFSRHNIIGRGGYGNVFKGALPDGTQVAFKRFKNCSAGGDANFAHEVEVIASIRHVNLLALRGYCTATTPYEGHQRIIVCDLVSNGSLHDHLFGDLEAQ-------LAWPLRQRIALGMARGLAYLHYGAQPSIIHRDIKASNILLDERFEAKVADFGLAKFNPE 439          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.704e-28
Identity = 82/218 (37.61%), Postives = 125/218 (57.34%), Query Frame = 2
Query:  119 KSSAGTDGAYHASEAAPKGAQAVKVQ-----PIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGIL----------KSGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADP-HIIHRDIKSSNVLIFDDDVAKIADFDLSNQAP 721
            KSS+G D  + +S  +   A A K +        V + S +ELK  T NF +++++GEG +G V+ G L           SG   A+K+L+    Q   E+L +++ + +L H N V+L+GYC++   R+L YEF   GSL + L    G K  +P   LSW  R+K+A+ AAKGL +LH  +DP  +I+RDIK+SN+L+  D  AK++DF L+   P
Sbjct:   12 KSSSGLDDLHLSSCKSSSSATAHKTEGEILSSTTVKSFSFNELKLATRNFRSDSVVGEGGFGCVFRGWLDETTLTPTKSSSGLVIAVKRLNPDGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEQRLLVYEFMHKGSLENHLFA-NGNKDFKP---LSWILRIKVALDAAKGLAFLH--SDPVKVIYRDIKASNILLDSDFNAKLSDFGLARDGP 223          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.704e-28
Identity = 74/200 (37.00%), Postives = 113/200 (56.50%), Query Frame = 2
Query:  155 SEAAPKGAQAVKVQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDE--EFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGR-KGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHS 745
            S    +G   + +  +++   + D++  +TEN     +IG G+   VY   LKS    AIK+L  ++ P    EF  ++  +  ++H N V L GY +  T  +L Y++  NGSL D+LHG  K VK       L W+ R+KIAVGAA+GL YLH    P IIHRDIKSSN+L+ ++  A ++DF ++   P  A++ H+
Sbjct:  616 SSKQAEGLTKLVILHMDMAIHTFDDIMRVTENLNEKFIIGYGASSTVYKCALKSSRPIAIKRL-YNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPTGNLLFYDYMENGSLWDLLHGSLKKVK-------LDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLDENFEAHLSDFGIAKSIP--ASKTHA 805          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: CRK28_ARATH (Cysteine-rich receptor-like protein kinase 28 OS=Arabidopsis thaliana GN=CRK28 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.704e-28
Identity = 65/166 (39.16%), Postives = 97/166 (58.43%), Query Frame = 2
Query:  215 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLS 709
            +  + LK  T+NF     +G G +G VY G+   G   A+K+L   S Q D EF  ++ ++++L+H N V+LLG+C++G  R+L YEF  N SL + +   K         +L W  R K+  G A+GL YLHE +   IIHRD+K+SN+L+  +   KIADF L+
Sbjct:  349 VDFETLKAATDNFSPENELGRGGFGSVYKGVFSGGQEIAVKRLSCTSGQGDSEFKNEILLLAKLQHRNLVRLLGFCIEGQERILVYEFIKNASLDNFIFDLK------KRQLLDWGVRYKMIGGVARGLLYLHEDSRYRIIHRDLKASNILLDQEMNPKIADFGLA 508          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.704e-28
Identity = 73/181 (40.33%), Postives = 111/181 (61.33%), Query Frame = 2
Query:  212 AISVDELKEITENFGTNALIGEGSYGRVYYGILK----------SGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAP 721
            A + +ELK  T NF  ++L+GEG +G V+ G +           SG   A+KKL     Q  +E+L +V+ + +L H N V+L+GYCV+G +R+L YEF   GSL + L  R    GAQP   L+W  R+K+A+GAAKGL +LH+ A   +I+RD K++N+L+  +  +K++DF L+   P
Sbjct:   70 AFTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHLFRR----GAQP---LTWAIRMKVAIGAAKGLTFLHD-AKSQVIYRDFKAANILLDAEFNSKLSDFGLAKAGP 242          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: Y4291_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana GN=At4g29180 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.225e-28
Identity = 71/198 (35.86%), Postives = 108/198 (54.55%), Query Frame = 2
Query:  173 GAQAVKVQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD--------------ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPD 724
            GA +  + P      +  E+  IT NF  N +IG+G +G VY G L+ G   A+K ++              +S Q  +EF  +  ++  + H N    +GYC DG S  L YE+ +NG+L D L        ++    LSW++R+ IA+ +A+GLEYLH    P I+HRD+K++N+L+ D+  AKIADF LS   P+
Sbjct:  543 GAYSGPLLPSGKRRFTYSEVSSITNNF--NKVIGKGGFGIVYLGSLEDGTEIAVKMINDSSFGKSKGSSSSSSSSQVSKEFQVEAELLLTVHHRNLASFVGYCDDGRSMALIYEYMANGNLQDYL-------SSENAEDLSWEKRLHIAIDSAQGLEYLHHGCRPPIVHRDVKTANILLNDNLEAKIADFGLSKVFPE 731          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.225e-28
Identity = 66/172 (38.37%), Postives = 106/172 (61.63%), Query Frame = 2
Query:  206 VPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDAS---KQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSN 712
            V A S+ +L+     F  N L+GEG+ GRVY    + G   A+K++D+S   K   EEF   VS +S + H+N  +L+GYC +    +L YE+ ++GSLH  LH       ++P   L+W  R++IA+G AK +EYLHE   P ++H++IKSSN+L+ ++   +++D+ L+N
Sbjct:  400 VKAFSLADLQNTASCFSPNRLLGEGTIGRVYKAKFQDGRKFAVKEIDSSLLGKGNPEEFSHIVSSISSIHHKNMAELVGYCSEQGRNMLVYEYFTSGSLHRFLHLSDDF--SKP---LTWNTRIRIALGTAKAIEYLHETCSPPLVHKNIKSSNILLDNELNPRLSDYGLAN 566          
The following BLAST results are available for this feature:
BLAST of FC931356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MEE39_ARATH9.988e-2943.83Probable LRR receptor-like serine/threonine-protei... [more]
Y5181_ARATH1.305e-2839.16Probable LRR receptor-like serine/threonine-protei... [more]
TMK1_ARATH1.305e-2837.71Probable receptor protein kinase TMK1 OS=Arabidops... [more]
RKF3_ARATH1.305e-2840.00Probable LRR receptor-like serine/threonine-protei... [more]
Y3545_ARATH1.704e-2837.61Probable receptor-like protein kinase At3g55450 OS... [more]
ERL1_ARATH1.704e-2837.00LRR receptor-like serine/threonine-protein kinase ... [more]
CRK28_ARATH1.704e-2839.16Cysteine-rich receptor-like protein kinase 28 OS=A... [more]
APK2B_ARATH1.704e-2840.33Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
Y4291_ARATH2.225e-2835.86Probable LRR receptor-like serine/threonine-protei... [more]
SRF4_ARATH2.225e-2838.37Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC34104C03EF PostHarvP1 Citrus clementina cDNA clone C34104C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931356 ID=FC931356; Name=FC931356; organism=Citrus clementina; type=EST; length=745bp
GATCTCAGCTAGCTTTCATAGAGGGGCATTATTGTGGCAGTGAATCATGA
GCTGCTTCGGCTGTTGTGAAGAAGATGATATGCATAAAGCTGCTGACAAT
GGCAATGCATACATGGTTAAAAGTTCAGCAGGAACTGATGGAGCCTATCA
TGCATCTGAAGCAGCACCTAAGGGTGCTCAAGCTGTGAAAGTCCAGCCCA
TTGAAGTCCCAGCAATTTCAGTGGATGAATTGAAGGAAATTACTGAGAAC
TTTGGGACTAATGCTTTGATTGGAGAAGGTTCATATGGAAGAGTATATTA
TGGGATTCTTAAAAGTGGACATGCTGCAGCAATAAAAAAGTTGGATGCCA
GCAAGCAACCTGATGAGGAGTTTTTAGCACAGGTTTCCATGGTATCAAGG
TTGAAGCATGAAAACTTTGTTCAGCTGCTCGGGTATTGTGTTGATGGGAC
TTCCCGTGTGCTTGCCTACGAGTTTGCATCTAATGGATCTCTTCATGATA
TTCTTCATGGGAGGAAAGGTGTAAAAGGAGCTCAGCCTGGTCCTGTTTTG
TCATGGCAACAGCGAGTGAAAATTGCTGTAGGGGCTGCGAAAGGGCTTGA
ATACTTGCATGAGAAGGCAGATCCTCATATTATCCATCGCGATATTAAGT
CCAGCAATGTACTAATTTTTGATGATGATGTAGCAAAGATTGCCGACTTT
GATTTATCTAATCAAGCTCCTGATATGGCAGCTCGCCTTCATTCT
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