FC931357

Overview
NameFC931357
Unique NameFC931357
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931357_ssr456 microsatellite FC931357_ssr456:456..467. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:2..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.738e-39
Identity = 90/195 (46.15%), Postives = 114/195 (58.46%), Query Frame = 2
Query:  122 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAG-LISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            ++ +G  GEAS PD  +  L E     +FVF G G+ M     T G  ST  G L + +L  A  + V  + G +ISGGHVNPAVT    VGGH+TL RS LY  AQ+L S  AC LL++ TGGL T   AL+ GV     VV E V TF L++ +YAT +DP+K  L    P+  G +VGAN +AG A  GASM
Sbjct:    3 KLTLGHRGEASEPDFFRGVLGELVLTFLFVFIGVGAAMTDGATTKG--STAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGGLATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRK-LLPGAGPLLTGLLVGANSVAGAALSGASM 194          

HSP 2 Score: 25.0238 bits (53), Expect = 2.738e-39
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  703 DPAVSFGPAVVSWTW 747
            +PA SFGPAV S  W
Sbjct:  195 NPARSFGPAVASGVW 209          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 8.526e-38
Identity = 86/189 (45.50%), Postives = 118/189 (62.43%), Query Frame = 2
Query:  146 EASHPDA--LKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP-AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            EA  PD   ++A LAE     +FVF G  + MA       G + P A L + ++AHA A  V V+ G ++SGGH+NPAVT G  V GHIT LR++LY  AQLL S +AC+LL++ +GG+ T   AL +G+     +V E+++TF L++  YA  +DP +  + TI P+  G IVGAN LAGG F GASM
Sbjct:   16 EAPAPDVGCVRAVLAELVLTFLFVFTGVSASMAAGAGGKPGEAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLASSLACILLRYLSGGMVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDP-RSQVRTIGPLLTGLIVGANSLAGGNFTGASM 203          

HSP 2 Score: 22.7126 bits (47), Expect = 8.526e-38
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  703 DPAVSFGPAVVSWTW 747
            +PA SFGPA+ +  W
Sbjct:  204 NPARSFGPAMATGVW 218          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 8.527e-38
Identity = 86/198 (43.43%), Postives = 114/198 (57.58%), Query Frame = 2
Query:  110 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            +P+ ++ +G  GEA  P  L+A   E     +FVF G  S +   K   GGA   A + +A++A A  + V  + G ++SGGH+NPAVT    VGGHITL RS LY  AQL GS +ACLLL+  TGG  T   AL+ GV     V  E V TF L+  + AT +DP++       P+  G +VGAN +AGGA  GASM
Sbjct:    4 LPMTKLELGHRGEAWEPGCLRAVAGELLFTFLFVFIGVASTITAGKAA-GGAGEAAAVTAAAMAQALVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRCLTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLVGANTVAGGALTGASM 200          

HSP 2 Score: 22.3274 bits (46), Expect = 8.527e-38
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  703 DPAVSFGPAVVSWTW 747
            +PA SFGPA+ +  W
Sbjct:  201 NPARSFGPALATGEW 215          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 5.430e-37
Identity = 83/180 (46.11%), Postives = 112/180 (62.22%), Query Frame = 2
Query:  167 LKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP-AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            ++A LAE     +FVF G  + MA       G + P A L + ++AHA A  V V+ G ++SGGH+NPAVT G  V GHIT LR++LY  AQLL S  AC+LL+F +GG+ T   AL  G+S    +V E+++TF L++  YA  +DP +  +  I P+  G IVGAN LAGG F GASM
Sbjct:   23 VRAVLAELVLTFLFVFTGVSAAMAAGSDGKPGDAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLRFLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDP-RSQVRAIGPLLTGLIVGANSLAGGNFTGASM 201          

HSP 2 Score: 22.3274 bits (46), Expect = 5.430e-37
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  703 DPAVSFGPAVVSWTW 747
            +PA SFGPA+ +  W
Sbjct:  202 NPARSFGPALATGDW 216          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 9.217e-37
Identity = 84/188 (44.68%), Postives = 110/188 (58.51%), Query Frame = 2
Query:  143 GEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP-AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            GE      ++A LAE     +FVF G  + MA       GA+ P A L   ++A A A  V V+ G ++SGGH+NPAVT      GHIT  RS LY  AQLL S +AC+LL++ TGG+ T    L SG+     +V EI++TF L++ VYAT +DP+    G   P+  G IVGAN +AGG F GASM
Sbjct:   11 GEVVDAGCVRAVLAELVLTFVFVFTGVAATMAAGVPEVAGAAMPMAALAGVAIATALAAGVLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLASSLACILLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDPRSSVPG-FGPLLTGLIVGANTIAGGNFSGASM 197          

HSP 2 Score: 22.7126 bits (47), Expect = 9.217e-37
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  703 DPAVSFGPAVVSWTW 747
            +PA SFGPA+ +  W
Sbjct:  198 NPARSFGPALATGVW 212          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 8.241e-35
Identity = 78/190 (41.05%), Postives = 114/190 (60.00%), Query Frame = 2
Query:  158 PDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLG--------TIAPIAIGFIVGANILAGGAFDGASM 703
            P AL+A  AEFFS  +FVF   GS ++   LT    S  + L++ ++A AF LF AV + A++SGGHVNPAVTF   +GGHIT+  +I YW +Q+LGS  ACL+L + + G       ++  ++ + A + E V+TF +VYTV+  A DP+ G  G         +  + +G + GA +LA G+  GASM
Sbjct:   14 PPALRAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFGLFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYISAGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVH-VAGDPRGGGFGGRKGPAATALGALVVGAVTGACVLAAGSLTGASM 202          

HSP 2 Score: 23.0978 bits (48), Expect = 8.241e-35
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  703 DPAVSFGPAVVS 738
            +PA SFGPAVVS
Sbjct:  203 NPARSFGPAVVS 214          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 77/181 (42.54%), Postives = 113/181 (62.43%), Query Frame = 2
Query:  161 DALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            +AL+  ++EF S   FV A  GS M+  KL  G  S P G++  ++A+A AL  +V +  N+SGGHVNPAVTF   V G I++  ++ YW +Q++ SV+ACL+LK +        + ++  ++ + A V E V+ F LVYTV+ TA DP++G    + PI IGF+ GAN+LA G F G SM
Sbjct:   20 NALRCYVSEFISTFFFVLAAVGSVMSSRKLMAGDVSGPFGVLIPAIANALALSSSVYISWNVSGGHVNPAVTFAMAVAGRISVPTAMFYWTSQMIASVMACLVLKVTVMEQHVPIYKIAGEMTGFGASVLEGVLAFVLVYTVF-TASDPRRGLPLAVGPIFIGFVAGANVLAAGPFSGGSM 199          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.426e-30
Identity = 73/190 (38.42%), Postives = 107/190 (56.32%), Query Frame = 2
Query:  164 ALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAG-LISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLG---------TIAPIAIGFIVGANILAGGAFDGASM 703
            +L++ LAEF S  +FVF   GS ++   LT    ++ AG L++ ++A AF LF AV + A++SGGHVNPAVTF   +GG I +  ++ YW +QLLG+  ACL L   + G E     ++  ++ +   V E V+TF LVYTV+       +   G          +  +A+G   GA +LA GA  GASM
Sbjct:   18 SLRSYLAEFISTFLFVFTAVGSAISARMLTTPDVTSSAGPLVATAVAQAFGLFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLNLFSAGEEVPTTRIAVAMTGFGGAVLEGVLTFLLVYTVHVVGEREPRSRGGDGKREFAATALGALAVGLTQGAFVLAAGALTGASM 207          

HSP 2 Score: 23.0978 bits (48), Expect = 5.426e-30
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  703 DPAVSFGPAVVS 738
            +PA SFGPAVVS
Sbjct:  208 NPARSFGPAVVS 219          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.123e-22
Identity = 67/181 (37.02%), Postives = 97/181 (53.59%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            +A  AEFF+ L +VF G G+ + +       A  P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+I Y +AQLLG+V    +L   T        AL++   GVS   A + EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA M
Sbjct:   11 RAICAEFFASLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGM 183          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.191e-21
Identity = 67/181 (37.02%), Postives = 97/181 (53.59%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            +A  AEFF+ L +VF G G+ + +       A  P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+I Y +AQLLG+V    +L   T        AL++   GVS   A + EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA M
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGM 183          
The following BLAST results are available for this feature:
BLAST of FC931357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
TIP43_MAIZE2.738e-3946.15Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP42_MAIZE8.526e-3845.50Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP42_ORYSJ8.527e-3843.43Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
TIP41_MAIZE5.430e-3746.11Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP41_ORYSJ9.217e-3744.68Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP51_ORYSJ8.241e-3541.05Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
TIP51_ARATH3.571e-3442.54Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
TIP51_MAIZE5.426e-3038.42Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
MIP_BOVIN9.123e-2237.02Lens fiber major intrinsic protein OS=Bos taurus G... [more]
MIP_SHEEP1.191e-2137.02Lens fiber major intrinsic protein OS=Ovis aries G... [more]

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Properties
Property NameValue
Genbank descriptionC34104C04EF PostHarvP1 Citrus clementina cDNA clone C34104C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931357 ID=FC931357; Name=FC931357; organism=Citrus clementina; type=EST; length=748bp
AAACACCGCTACGCAATATACAACGGAGCACAAAACAGAGCCAGCAAGCT
TGTAAGAAGCCTTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATTT
TCGATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGC
AAGCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGC
TTATTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTA
ACGGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGC
TCATGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTG
GGGGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCAC
ATTACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATC
AGTTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACAT
CGGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTT
GAGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGT
GGATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTT
TCATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATCA
ATGACCCAGCAGTCTCTTTTGGTCCTGCTGTGGTTAGCTGGACTTGGA
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