FC931357

Overview
NameFC931357
Unique NameFC931357
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931357_ssr456 microsatellite FC931357_ssr456:456..467. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:2..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.556e-21
Identity = 63/177 (35.59%), Postives = 99/177 (55.93%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++    + + +   TD  AS P       G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++LY  AQ LG++    L+K    G        A  +S+G S+   +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   41 RAVIAEFVATLLFLYITVATVIGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAICGVALVKGFQSGFYARYGGGANEVSAGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 216          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.654e-21
Identity = 67/181 (37.02%), Postives = 95/181 (52.49%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            +A  AEFF+ L +VF G G+ + +       A  P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+I Y  AQLLG+V    +L   T        AL++   GVS   A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA M
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVLYSVTPAAVRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGM 183          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.467e-21
Identity = 64/181 (35.36%), Postives = 101/181 (55.80%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA--------LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++    + + +   TD  AS P       G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++LY IAQ LG++    L+K    G +++ +         LS G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   41 RAVIAEFIATLLFLYITVATVIGYKHQTDASASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVK----GFQSAYYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAV 216          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.467e-21
Identity = 64/181 (35.36%), Postives = 101/181 (55.80%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA--------LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++    + + +   TD  AS P       G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++LY IAQ LG++    L+K    G +++ +         LS G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   42 RAVIAEFIATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVK----GFQSAYYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAV 217          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 5.913e-21
Identity = 66/184 (35.87%), Postives = 102/184 (55.43%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAF---ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            +A +AEF +M++F+F   GS + F        +T A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I++LR+I+Y IAQ +G++VA ++L   T  L  ++    AL+ GV+S   +  EI+ T  LV  V AT    ++ +LG   P+AIGF V    L    + G  +
Sbjct:   12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISILRAIMYIIAQCVGAIVATVILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRRDLGDSGPLAIGFSVALGHLLAIDYTGCGI 194          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.723e-21
Identity = 62/177 (35.03%), Postives = 98/177 (55.37%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++    + + +   TD  AS P       G++  + A    +F+ V   A +SGGH+NPAVTFG F+   ++L+R++LY +AQ LG++    L+K             A  LS+G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   37 RAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKGFQSAFYVRYGGGANELSAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 212          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.009e-20
Identity = 69/178 (38.76%), Postives = 99/178 (55.62%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTD----GGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF--ST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++    + + F   TD    GGA    GL+  S A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++ Y +AQ LG+     L+K   ST     GG    A  LS G +    V  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   38 RAVIAEFIATLLFLYVTVLTVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQSTYYNRYGG---GANMLSDGYNVGVGVGAEIIGTFVLVYTVF-SATDPKRNARDSHIPVLAPLPIGFSV 211          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.009e-20
Identity = 65/181 (35.91%), Postives = 101/181 (55.80%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETS--------AFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++    + + +   TD  AS         G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R+ILY +AQ LG+V    L+K    G ++S        A  L++G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   36 RAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAVCGVALVK----GFQSSFYDRYGGGANELAAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 211          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.317e-20
Identity = 62/185 (33.51%), Postives = 100/185 (54.05%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAG----LISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAF---ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            +A +AEF +M++FVF   G+ + F+   +  A+   G    ++  SLA   ++        ++SG H+NPAVT G  +   I++L++++Y IAQ LG+VVA  +L   T GLE ++     LS GVS+   +  EI++TF LV  V A   D ++ ++    P+AIG  V    L    + G  M
Sbjct:   12 RAVIAEFLAMILFVFISIGAALGFNFPIEEKANQTVGRSQDIVKVSLAFGISIATMAQSVGHVSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAVVATAILSGITSGLENNSLGLNGLSPGVSAGQGLGVEILVTFQLVLCVVA-VTDRRRHDVSGSVPLAIGLSVALGHLIAIDYTGCGM 195          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.720e-20
Identity = 66/181 (36.46%), Postives = 94/181 (51.93%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALS---SGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            +A  AEFF+ L +VF G GS + +       A  P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+  Y  AQLLG+V    +L   T        AL+   +GVS   A   EI +T   V  ++AT  + + G +G++A +A+GF +    L G  + GA M
Sbjct:    9 RAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFGMYYTGAGM 181          
The following BLAST results are available for this feature:
BLAST of FC931357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
PIP26_MAIZE1.556e-2135.59Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
MIP_RABIT2.654e-2137.02Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
PIP24_MAIZE3.467e-2135.36Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE3.467e-2135.36Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
AQP1_SHEEP5.913e-2135.87Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
PIP25_MAIZE7.723e-2135.03Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP26_ARATH1.009e-2038.76Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP25_ORYSJ1.009e-2035.91Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
AQPA_RANES1.317e-2033.51Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
MIP_RAT1.720e-2036.46Lens fiber major intrinsic protein (Fragment) OS=R... [more]

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Properties
Property NameValue
Genbank descriptionC34104C04EF PostHarvP1 Citrus clementina cDNA clone C34104C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931357 ID=FC931357; Name=FC931357; organism=Citrus clementina; type=EST; length=748bp
AAACACCGCTACGCAATATACAACGGAGCACAAAACAGAGCCAGCAAGCT
TGTAAGAAGCCTTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATTT
TCGATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGC
AAGCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGC
TTATTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTA
ACGGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGC
TCATGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTG
GGGGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCAC
ATTACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATC
AGTTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACAT
CGGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTT
GAGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGT
GGATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTT
TCATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATCA
ATGACCCAGCAGTCTCTTTTGGTCCTGCTGTGGTTAGCTGGACTTGGA
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