FC931357

Overview
NameFC931357
Unique NameFC931357
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931357_ssr456 microsatellite FC931357_ssr456:456..467. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:2..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.006e-20
Identity = 63/171 (36.84%), Postives = 99/171 (57.89%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGG----LETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +AA+AEF + L+F++    + + + K TD  AS   GL+  + +    +FV V   A ISGGH+NPAVTFG F+   ++LLR+++Y IAQ  G++    L+K    G        A +++ G +   A   E++ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   40 RAAIAEFIATLLFLYITVATVIGYKKETDPCASV--GLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAV 207          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.006e-20
Identity = 65/181 (35.91%), Postives = 93/181 (51.38%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            +A  AEFF+ L +VF G GS + +       A  P  ++  ++A   AL   V    +ISG HVNPAVTF   VG  ++LLR+  Y  AQLLG+V    +L   T        AL++    VS   A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA M
Sbjct:   11 RAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSVA-LAVGFSLALGHLFGMYYTGAGM 183          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.538e-20
Identity = 63/181 (34.81%), Postives = 95/181 (52.49%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            +A  AEFF  + +VF G G+ + +       A+ PA ++  +LA    L   V    ++SG H+NPAVTF   +G  ++L R+I Y  AQLLG+V    +L   T        AL++   GVS   A   EI +T   V  ++AT  + + G LG+++ +AIGF +    L G  + GASM
Sbjct:   11 RAVFAEFFGTMFYVFFGLGASLKW-------AAGPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPAAIRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVS-LAIGFSLTLGHLFGLYYTGASM 183          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.538e-20
Identity = 64/183 (34.97%), Postives = 98/183 (53.55%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            +A LAEF + L+FVF G GS + +       AS+P  ++  ++A    + + V    ++SG H+NPAVT    VG H++ LR+  Y  AQLLG+V    +L   T     G L  +  AL +  ++  AV  E+ +T  LV  ++A+  + +  NLG+ A ++IGF V    L G  F G SM
Sbjct:   11 RAVLAEFLATLLFVFFGLGSALQW-------ASSPPSVLQIAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLAVN--ALHNNATAGQAVTVELFLTMQLVLCIFASTDERRGDNLGSPA-LSIGFSVTLGHLLGIYFTGCSM 183          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.539e-20
Identity = 60/177 (33.90%), Postives = 97/177 (54.80%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++    + + +   +D GA+         G++  + A    +F+ V   A +SGGH+NPAVTFG F+   ++L+R++LY +AQ LG++    L+K             A  LS G S    +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   42 RAVIAEFVATLLFLYITVATVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAVLYIVAQSLGAICGVGLVKGFQSAFYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 217          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.539e-20
Identity = 64/183 (34.97%), Postives = 97/183 (53.01%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            +A LAEF + L+FVF G GS + +       AS+P  ++  ++A    +   V    ++SG H+NPAVT    VG H++ LR+  Y  AQLLG+V    +L   T     G L  +  AL +  ++  AV  E+ +T  LV  ++A+  + +  NLG+ A ++IGF V    L G  F G SM
Sbjct:   11 RAVLAEFLATLLFVFFGLGSALQW-------ASSPPSVLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLAVN--ALHNNATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGSPA-LSIGFSVTLGHLLGIYFTGCSM 183          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.902e-19
Identity = 64/180 (35.56%), Postives = 96/180 (53.33%), Query Frame = 2
Query:  143 GEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVAC----LLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            GE       +A +AEF + L+F++    + +   K T  G     GL+  + A    +FV V   A ISGGH+NPAVTFG F+   ++L+R++ Y IAQ LG++         +K     L   A  ++ G S   A+  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   29 GELKSWSFYRALIAEFIATLLFLYVTVATVIGHKKQT--GPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHIPVLAPLPIGFAV 205          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.484e-19
Identity = 64/184 (34.78%), Postives = 100/184 (54.35%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            +A +AEF +M++FVF   GS + F+       +  A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I++LR+++Y IAQ +G++VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV  V AT  D ++ +LG   P+AIG  V    L    + G  +
Sbjct:   12 RAVVAEFLAMILFVFISIGSALGFNYPVRNNQTAGAAQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLPDNSLGRNELAPGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSGPLAIGLSVALGHLLAIDYTGCGI 193          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.077e-19
Identity = 66/190 (34.74%), Postives = 105/190 (55.26%), Query Frame = 2
Query:  140 PGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDG---GASTPAGLISASLAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAF--------ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            P E +     +AA+AEF + L+F++    + + + + +D    G +   G+    +A AF   +F+ V   A ISGGH+NPAVTFG F+G  ++L+R++LY IAQ  G++    L K    G + S +         +S G +   A+  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   30 PDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAK----GFQKSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 214          

HSP 2 Score: 21.1718 bits (43), Expect = 3.077e-19
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  703 DPAVSFGPAVV 735
            +PA SFGPAV+
Sbjct:  230 NPARSFGPAVI 240          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 4.238e-19
Identity = 60/181 (33.15%), Postives = 95/181 (52.49%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            +A +AEF +M +FVF   GS + F+   +   +     +  SLA   ++        +ISG H+NPAVT G  +   I++LR+++Y IAQ +G++VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV  V AT  D ++ +LG  AP+AIG  V    L    + G  +
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLVDNSLGRNDLAHGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGI 191          
The following BLAST results are available for this feature:
BLAST of FC931357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
PIP1_ATRCA5.006e-2036.84Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
MIP_HUMAN5.006e-2035.91Lens fiber major intrinsic protein OS=Homo sapiens... [more]
MIP_RANPI6.538e-2034.81Lens fiber major intrinsic protein OS=Rana pipiens... [more]
AQP2_RAT6.538e-2034.97Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
PIP23_ORYSJ8.539e-2033.90Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
AQP2_MOUSE8.539e-2034.97Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
PIP27_ARATH1.902e-1935.56Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
AQP1_CANFA2.484e-1934.78Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]
PIP27_MAIZE3.077e-1934.74Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
AQP1_MOUSE4.238e-1933.15Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34104C04EF PostHarvP1 Citrus clementina cDNA clone C34104C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931357 ID=FC931357; Name=FC931357; organism=Citrus clementina; type=EST; length=748bp
AAACACCGCTACGCAATATACAACGGAGCACAAAACAGAGCCAGCAAGCT
TGTAAGAAGCCTTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATTT
TCGATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGC
AAGCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGC
TTATTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTA
ACGGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGC
TCATGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTG
GGGGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCAC
ATTACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATC
AGTTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACAT
CGGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTT
GAGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGT
GGATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTT
TCATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATCA
ATGACCCAGCAGTCTCTTTTGGTCCTGCTGTGGTTAGCTGGACTTGGA
back to top