FC931357

Overview
NameFC931357
Unique NameFC931357
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931357_ssr456 microsatellite FC931357_ssr456:456..467. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:2..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 61/171 (35.67%), Postives = 94/171 (54.97%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK----FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++    + +     T  G     GL+  + A    +FV V   A ISGGH+NPAVTFG F+   ++L R++ Y +AQ LG++    L+K         L   A  ++ G S+  A+  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   36 RAIIAEFIATLLFLYVTVATVIGHKNQT--GPCGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMTPYKRLGGGANTVADGYSTGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAV 203          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: AQP8_HUMAN (Aquaporin-8 OS=Homo sapiens GN=AQP8 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.266e-18
Identity = 61/187 (32.62%), Postives = 92/187 (49.20%), Query Frame = 2
Query:  167 LKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK--------FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            ++  L E     +F+F G       S + +G   T  GL+  +LAH  AL + ++   NISGGH NPAV+  A + G + L+  + YW++QLLG ++   L K        ++  G           V+   A+V EI++T  L   V   A++ K    G +AP +IGF V  +ILAGG   G  M
Sbjct:   35 VQPCLVELLGSALFIFIG-----CLSVIENG---TDTGLLQPALAHGLALGLVIATLGNISGGHFNPAVSLAAMLIGGLNLVMLLPYWVSQLLGGMLGAALAKAVSPEERFWNASGAAFVTVQEQGQVA--GALVAEIILTTLLALAVCMGAINEK--TKGPLAPFSIGFAVTVDILAGGPVSGGCM 209          

HSP 2 Score: 23.8682 bits (50), Expect = 4.266e-18
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  694 CINDPAVSFGPAVVSWTW 747
            C+N PA +FGPAVV+  W
Sbjct:  208 CMN-PARAFGPAVVANHW 224          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.685e-18
Identity = 59/175 (33.71%), Postives = 100/175 (57.14%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTD---GGASTPA-GLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++    + + +   +D   GG      G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++LY +AQ LG++     +K F +   +     A +L+ G ++   +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   37 RAVIAEFVATLLFLYITVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSYYDRYGGGANSLADGYNTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 210          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.119e-18
Identity = 59/172 (34.30%), Postives = 95/172 (55.23%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAF-SKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSV----VACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + LIF++    + + + ++     A T  G +  + +    +FV V     +SGGH+NPAVT G F G  ++L+R++LY +AQ LG++    +   ++K     L   A  +S G S+  A+  EIV TF LVYTV+ +A DPK+      +  + P+ IGF V
Sbjct:   44 RALIAEFMATLIFLYVSIATVIGYKNQRATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAAGALGAEIVGTFILVYTVF-SATDPKRTARDSFIPVLVPLPIGFAV 214          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 6.119e-18
Identity = 58/181 (32.04%), Postives = 91/181 (50.28%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            +A +AEF +  +FVF   GS + F        +     +  SLA   ++        +ISG H+NPAVT G  +   I++ R+++Y IAQ +G++VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV  V AT  D ++ +LG  AP+AIG  V    L    + G  +
Sbjct:   12 RAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGI 191          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.169e-18
Identity = 61/185 (32.97%), Postives = 98/185 (52.97%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            KA  AEF +MLIFV    GS + +     GG+  P  +    ++  F L +A  V    +ISGGH+NPAVT        I++ +S+ Y  AQ LG+++   +L   T     GGL  +   +   +++ + ++ E+++TF LV+T++A+    +    G+IA +AIGF V    L    + GASM
Sbjct:   39 KAVTAEFLAMLIFVLLSVGSTINW-----GGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPNVVGGLGVT--TVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASM 215          

HSP 2 Score: 24.2534 bits (51), Expect = 7.169e-18
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  703 DPAVSFGPAVVSWTW 747
            +PA SFGPAV+   W
Sbjct:  216 NPARSFGPAVIMGNW 230          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 7.170e-18
Identity = 62/185 (33.51%), Postives = 97/185 (52.43%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            KA  AEF +MLIFV    GS + +     GGA  P  +    ++  F L +A  V    +ISGGH+NPAVT        I++ +S+ Y  AQ LG+++   +L   T     GGL  +   +   +S+ + ++ E+++TF LV+T++A+    +    G+IA +AIG  V    L    + GASM
Sbjct:   36 KAVTAEFLAMLIFVLLSLGSTINW-----GGAEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVT--TVHGNLSAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGISVAIGHLFAINYTGASM 212          

HSP 2 Score: 24.2534 bits (51), Expect = 7.170e-18
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  703 DPAVSFGPAVVSWTW 747
            +PA SFGPAV+   W
Sbjct:  213 NPARSFGPAVIMGNW 227          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.992e-18
Identity = 60/178 (33.71%), Postives = 99/178 (55.62%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTD---GGASTPA-GLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-------FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKK----GNLGTIAPIAIGFIV 658
            +A +AEF + L+F++    + + +   +D   GG      G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++LY +AQ LG++     +K        + GG    A  L+ G ++   +  EI+ TF LVYTV+ +A DPK+     ++  +AP+ IGF V
Sbjct:   37 RAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSHYVNYGG---GANFLADGYNTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 210          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.323e-18
Identity = 60/185 (32.43%), Postives = 98/185 (52.97%), Query Frame = 2
Query:  170 KAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            KA  AEF +MLIFV    GS + +     GG+  P  +    ++  F L +A  V    +ISGGH+NPAVT        I++ +S+ Y  AQ LG+++   +L   T     GGL  +   +   +++ + ++ E+++TF LV+T++A+    +    G++A +AIGF V    L    + GASM
Sbjct:   36 KAVTAEFLAMLIFVLLSVGSTINW-----GGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVT--TVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA-LAIGFSVAIGHLFAINYTGASM 212          

HSP 2 Score: 24.2534 bits (51), Expect = 9.323e-18
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  703 DPAVSFGPAVVSWTW 747
            +PA SFGPAV+   W
Sbjct:  213 NPARSFGPAVIMGNW 227          
BLAST of FC931357 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.376e-18
Identity = 59/183 (32.24%), Postives = 92/183 (50.27%), Query Frame = 2
Query:  167 LKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASM 703
            LKA  AEF + LIFVF G GS + +        S    ++  +LA   A+         +SGGH+NPA+T    VG  I+LLR+  Y  AQL+G++    +L +    L      +  AL++  +   A+V E+++TF L   ++A+    +   +G+ A ++IG  V    L G  F G SM
Sbjct:   11 LKAVFAEFLATLIFVFFGLGSALKWP-------SALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGIL-YGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSM 184          

HSP 2 Score: 23.483 bits (49), Expect = 9.376e-18
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  694 CINDPAVSFGPAVV 735
            C  +PA SFGPAVV
Sbjct:  182 CSMNPARSFGPAVV 195          
The following BLAST results are available for this feature:
BLAST of FC931357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
PIP28_ARATH3.587e-1835.67Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
AQP8_HUMAN4.266e-1832.62Aquaporin-8 OS=Homo sapiens GN=AQP8 PE=2 SV=2[more]
PIP22_ARATH4.685e-1833.71Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP27_ORYSJ6.119e-1834.30Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
AQP1_HUMAN6.119e-1832.04Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQP4_NOTAL7.169e-1832.97Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_BOVIN7.170e-1833.51Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
PIP23_ARATH7.992e-1833.71Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
AQP4_RAT9.323e-1832.43Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP5_HUMAN9.376e-1832.24Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34104C04EF PostHarvP1 Citrus clementina cDNA clone C34104C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931357 ID=FC931357; Name=FC931357; organism=Citrus clementina; type=EST; length=748bp
AAACACCGCTACGCAATATACAACGGAGCACAAAACAGAGCCAGCAAGCT
TGTAAGAAGCCTTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATTT
TCGATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGC
AAGCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGC
TTATTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTA
ACGGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGC
TCATGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTG
GGGGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCAC
ATTACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATC
AGTTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACAT
CGGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTT
GAGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGT
GGATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTT
TCATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATCA
ATGACCCAGCAGTCTCTTTTGGTCCTGCTGTGGTTAGCTGGACTTGGA
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