FC931359

Overview
NameFC931359
Unique NameFC931359
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15316 contig Ccv1_Contig15316:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 7.082e-81
Identity = 98/133 (73.68%), Postives = 116/133 (87.22%), Query Frame = 3 
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            ++DGKVR D TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDTV++D+ TGKI++F+KFD+G + M  GG N+GRVGVIT+RERH G
Sbjct:   71 KIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPG 203

HSP 2 Score: 107.842 bits (268), Expect = 7.082e-81
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 2 
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLIVF+RNRLKYAL G EVK I MQR +
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFI 70
[Close]
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 7.082e-81
Identity = 98/133 (73.68%), Postives = 116/133 (87.22%), Query Frame = 3 
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            ++DGKVR D TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDTV++D+ TGKI++F+KFD+G + M  GG N+GRVGVIT+RERH G
Sbjct:   71 KIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPG 203

HSP 2 Score: 107.842 bits (268), Expect = 7.082e-81
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 2 
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLIVF+RNRLKYAL G EVK I MQR +
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFI 70
[Close]
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 7.082e-81
Identity = 98/133 (73.68%), Postives = 116/133 (87.22%), Query Frame = 3 
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            ++DGKVR D TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDTV++D+ TGKI++F+KFD+G + M  GG N+GRVGVIT+RERH G
Sbjct:   71 KIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPG 203

HSP 2 Score: 107.842 bits (268), Expect = 7.082e-81
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 2 
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLIVF+RNRLKYAL G EVK I MQR +
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFI 70
[Close]
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 213.772 bits (543), Expect = 1.572e-80
Identity = 98/133 (73.68%), Postives = 117/133 (87.97%), Query Frame = 3 
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            ++DGKVRTD TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI AEEA+YKLCKV+++ +   GIP LVTHDARTIRYPDP IKVNDTV++++ TGKI DF+KFD+G + M TGG N+GR+GVIT+RE+H G
Sbjct:   71 KIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVATKGIPHLVTHDARTIRYPDPLIKVNDTVQINLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNREKHPG 203

HSP 2 Score: 107.457 bits (267), Expect = 1.572e-80
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2 
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70
[Close]
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 213.772 bits (543), Expect = 1.572e-80
Identity = 97/133 (72.93%), Postives = 116/133 (87.22%), Query Frame = 3 
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            ++DGKVRTDTTYP GFMDVIS+EKTGEHFRLVYDTKGRF VHRI AEEA+YKLCKV++  +G   IP LVTHDARTIRYPDP IK+NDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RE+H G
Sbjct:   71 KIDGKVRTDTTYPVGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTFVGTKAIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNMCMVTGGANLGRIGVITNREKHPG 203

HSP 2 Score: 107.457 bits (267), Expect = 1.572e-80
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2 
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70
[Close]
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4Y2_PANTR (40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2 PE=2 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 1.572e-80
Identity = 98/133 (73.68%), Postives = 114/133 (85.71%), Query Frame = 3 
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            ++DGKVR D TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDTV++D+ TGKI  F+KFD+G V M  GG N+GRVGV+T+RERH G
Sbjct:   71 KIDGKVRVDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIGGANLGRVGVVTNRERHPG 203

HSP 2 Score: 107.842 bits (268), Expect = 1.572e-80
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 2 
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLIVF+RNRLKYAL G EVK I MQR +
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFI 70
[Close]
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 2.050e-80
Identity = 98/133 (73.68%), Postives = 116/133 (87.22%), Query Frame = 3 
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            +VDGKVRTD TYPAGFMDVIS+EKTGE+FRL+YD KGRFTVHRI  EEA+YKLCKVK++ +G  GIP LVTHDARTIRYPDP IK NDTV++D+ TGKI +F+KFD+G + M TGG N+GR+GVIT+RERH G
Sbjct:   71 KVDGKVRTDITYPAGFMDVISIEKTGENFRLIYDVKGRFTVHRITNEEAKYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPMIKANDTVRIDLETGKITEFIKFDTGNLCMVTGGANLGRIGVITNRERHPG 203

HSP 2 Score: 107.457 bits (267), Expect = 2.050e-80
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2 
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70
[Close]
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_CRIGR (40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 2.050e-80
Identity = 96/133 (72.18%), Postives = 118/133 (88.72%), Query Frame = 3 
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            ++DGKVRTD TYPAGFMDVIS++KTGE+FRL+YDTKGRF VHRI +EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G
Sbjct:   71 KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITSEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPG 203

HSP 2 Score: 107.457 bits (267), Expect = 2.050e-80
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2 
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70
[Close]
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_BOVIN (40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 3.487e-80
Identity = 96/133 (72.18%), Postives = 117/133 (87.97%), Query Frame = 3 
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            ++DGKVRTD TYPAGFMDVIS++KTGE+FRL+YDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G
Sbjct:   71 KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPG 203

HSP 2 Score: 107.457 bits (267), Expect = 3.487e-80
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2 
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70
[Close]
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4X_RAT (40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 3.487e-80
Identity = 96/133 (72.18%), Postives = 117/133 (87.97%), Query Frame = 3 
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            ++DGKVRTD TYPAGFMDVIS++KTGE+FRL+YDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G
Sbjct:   71 KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPG 203

HSP 2 Score: 107.457 bits (267), Expect = 3.487e-80
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2 
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70
The following BLAST results are available for this feature:
BLAST of FC931359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4Y1_PANPA7.082e-8173.6840S ribosomal protein S4, Y isoform 1 OS=Pan panis... [more]
RS4Y1_HUMAN7.082e-8173.6840S ribosomal protein S4, Y isoform 1 OS=Homo sapi... [more]
RS4Y1_GORGO7.082e-8173.6840S ribosomal protein S4, Y isoform 1 OS=Gorilla g... [more]
RS4Y1_MONDO1.572e-8073.6840S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4X_MONDO1.572e-8072.9340S ribosomal protein S4, X isoform OS=Monodelphis... [more]
RS4Y2_PANTR1.572e-8073.6840S ribosomal protein S4, Y isoform 2 OS=Pan trogl... [more]
RS4_ICTPU2.050e-8073.6840S ribosomal protein S4 OS=Ictalurus punctatus GN... [more]
RS4_CRIGR2.050e-8072.1840S ribosomal protein S4 OS=Cricetulus griseus GN=... [more]
RS4_BOVIN3.487e-8072.1840S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=... [more]
RS4X_RAT3.487e-8072.1840S ribosomal protein S4, X isoform OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionC34104C07EF PostHarvP1 Citrus clementina cDNA clone C34104C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931359 ID=FC931359; Name=FC931359; organism=Citrus clementina; type=EST; length=679bp
CTTCTCGGCTTGAGCATTCTCTTTCGACACTCCGACCACCTAACCTTCAG
TCGACAAATCAGTCAAAATGCGCGGCCCCGGAAAGCACCAGAAGCGCCTC
AGCGCGCCCTCGCACTGGCTCTTGGACAAAATGTCCGGAACCTACGCGCC
CAAGGCCTCCCCCGGTCCCCACAAGCTCCGGGACTGCCTTCCCCTGATTG
TCTTCATCCGTAACCGTCTCAAGTACGCCCTGAACGGTCGCGAGGTCAAG
GCCATCATGATGCAGCGTCTGGTCACAGGTTGACGGCAAGGTCCGCACCG
ACACCACCTACCCCGCTGGATTCATGGACGTCATCTCCCTCGAGAAGACC
GGCGAGCACTTCCGTCTCGTTTACGACACCAAGGGTCGCTTCACCGTCCA
CCGTATTCAGGCTGAGGAGGCTGAGTACAAGCTCTGCAAGGTCAAGCGTG
TTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTACGCACGATGCGCGA
ACCATCCGCTACCCCGACCCTGCCATCAAGGTCAACGACACCGTCAAGGT
TGACATTGCCACTGGCAAGATCCTCGACTTCGTCAAGTTCGACTCCGGTG
TTGTCATCATGGCCACTGGTGGTCGCAACATGGGTCGTGTTGGTGTCATC
ACTCACCGTGAGCGTCACGACGGTGGTTT
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