FC931359 | Citrus Genome Database

Overview


Name	FC931359
Unique Name	FC931359
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	679

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4X_MOUSE (40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 3.487e-80
Identity = 96/133 (72.18%), Postives = 117/133 (87.97%), Query Frame = 3

Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            ++DGKVRTD TYPAGFMDVIS++KTGE+FRL+YDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G
Sbjct:   71 KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPG 203

HSP 2 Score: 107.457 bits (267), Expect = 3.487e-80
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2

Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70

BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4X_MESAU (40S ribosomal protein S4, X isoform OS=Mesocricetus auratus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 3.487e-80
Identity = 96/133 (72.18%), Postives = 117/133 (87.97%), Query Frame = 3

Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            ++DGKVRTD TYPAGFMDVIS++KTGE+FRL+YDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G
Sbjct:   71 KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPG 203

HSP 2 Score: 107.457 bits (267), Expect = 3.487e-80
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2

Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70

BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4X_MACFU (40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata GN=RPS4X PE=2 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 3.487e-80
Identity = 96/133 (72.18%), Postives = 117/133 (87.97%), Query Frame = 3

Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            ++DGKVRTD TYPAGFMDVIS++KTGE+FRL+YDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G
Sbjct:   71 KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPG 203

HSP 2 Score: 107.457 bits (267), Expect = 3.487e-80
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2

Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70

BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4X_HUMAN (40S ribosomal protein S4, X isoform OS=Homo sapiens GN=RPS4X PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 3.487e-80
Identity = 96/133 (72.18%), Postives = 117/133 (87.97%), Query Frame = 3

Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            ++DGKVRTD TYPAGFMDVIS++KTGE+FRL+YDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G
Sbjct:   71 KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPG 203

HSP 2 Score: 107.457 bits (267), Expect = 3.487e-80
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2

Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70

BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4X_FELCA (40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 3.487e-80
Identity = 96/133 (72.18%), Postives = 117/133 (87.97%), Query Frame = 3

Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            ++DGKVRTD TYPAGFMDVIS++KTGE+FRL+YDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G
Sbjct:   71 KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPG 203

HSP 2 Score: 107.457 bits (267), Expect = 3.487e-80
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2

Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70

BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4X_CERAE (40S ribosomal protein S4, X isoform OS=Cercopithecus aethiops GN=RPS4X PE=2 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 3.487e-80
Identity = 96/133 (72.18%), Postives = 117/133 (87.97%), Query Frame = 3

Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            ++DGKVRTD TYPAGFMDVIS++KTGE+FRL+YDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G
Sbjct:   71 KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPG 203

HSP 2 Score: 107.457 bits (267), Expect = 3.487e-80
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2

Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70

BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 7.739e-80
Identity = 97/133 (72.93%), Postives = 115/133 (86.47%), Query Frame = 3

Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            ++DGKVR D TYPAGFMDVIS++KTGEHFRLVYDTKGRF V RI  EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDTV++D+ TGKI++F+KFD+G V M  GG N+GRVGVIT+RERH G
Sbjct:   71 KIDGKVRVDITYPAGFMDVISIDKTGEHFRLVYDTKGRFAVQRITVEEAKYKLCKVRKITVGMKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKIINFIKFDTGNVCMVIGGANLGRVGVITNRERHPG 203

HSP 2 Score: 107.842 bits (268), Expect = 7.739e-80
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 2

Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLIVF+RNRLKYAL G EVK I MQR +
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFI 70

BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_IXOSC (40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 7.740e-80
Identity = 103/133 (77.44%), Postives = 117/133 (87.97%), Query Frame = 3

Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            +VDGKVRTDT YPAGFMDV+++EKTGE FRL+YD KGRFT+HRI  EEA+YKLC+VKRVQ+G  G+PFL THDARTIRYPDP IKVNDTVKVD+ATGKI D++KFDSG V M TGG N+GRVGVIT RERH G
Sbjct:   71 KVDGKVRTDTNYPAGFMDVVTIEKTGEFFRLLYDVKGRFTLHRITPEEAKYKLCRVKRVQVGPKGVPFLTTHDARTIRYPDPLIKVNDTVKVDLATGKIDDYIKFDSGNVCMVTGGHNLGRVGVITSRERHPG 203

HSP 2 Score: 98.9821 bits (245), Expect = 7.740e-80
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 2

Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KRL+AP  W+LDK+ G +AP+ S GPHKLR+ LPLI+ +RNRLKYAL G EVK I+ QRL+
Sbjct:    3 RGPKKHLKRLNAPKSWMLDKLGGVFAPRPSTGPHKLRESLPLIIMLRNRLKYALTGAEVKKIVKQRLI 70

BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.009e-79
Identity = 99/134 (73.88%), Postives = 115/134 (85.82%), Query Frame = 3

Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGG 677
            QV GKVRTDTTYPAGFMDVI+LE T EHFRL YD KG+F VHRI AEEA YKL KVK+VQLGK G+P++VTHD RTIRYPDP I+ NDTVK+D+ATGKI  F+KFD+G ++M TGGRN+GRVGVI HRE+ +GG
Sbjct:   71 QVVGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRANDTVKIDLATGKIXSFIKFDTGRLVMVTGGRNLGRVGVIVHREKLEGG 204

HSP 2 Score: 105.531 bits (262), Expect = 1.009e-79
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 2

Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KRL+APSHW+L K+SGTYAP+ S GPH LR+ LPL VF+RNRL YAL GREVKAIMMQ+ V
Sbjct:    3 RGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHV 70

BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4X_DANRE (40S ribosomal protein S4, X isoform OS=Danio rerio GN=rps4x PE=2 SV=3)

HSP 1 Score: 209.534 bits (532), Expect = 2.921e-79
Identity = 93/133 (69.92%), Postives = 116/133 (87.22%), Query Frame = 3

Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            ++DGKVRTD TYP GFMDV+S+EKTGE+FRL+YD KGRFTVHRI  EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KF++G + M TGG N+GR+GVIT+RE+H G
Sbjct:   71 KIDGKVRTDITYPTGFMDVVSIEKTGENFRLIYDVKGRFTVHRITNEEAKYKLCKVRKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTIRIDLDTGKITDFIKFETGNMCMVTGGANLGRIGVITNREKHPG 203

HSP 2 Score: 107.457 bits (267), Expect = 2.921e-79
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2

Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70

The following BLAST results are available for this feature:

BLAST of FC931359 vs. ExPASy Swiss-Prot

BLAST of FC931359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103


Match Name	E-value	Identity	Description
RS4X_MOUSE	3.487e-80	72.18	40S ribosomal protein S4, X isoform OS=Mus musculu...	[more]
RS4X_MESAU	3.487e-80	72.18	40S ribosomal protein S4, X isoform OS=Mesocricetu...	[more]
RS4X_MACFU	3.487e-80	72.18	40S ribosomal protein S4, X isoform OS=Macaca fusc...	[more]
RS4X_HUMAN	3.487e-80	72.18	40S ribosomal protein S4, X isoform OS=Homo sapien...	[more]
RS4X_FELCA	3.487e-80	72.18	40S ribosomal protein S4, X isoform OS=Felis catus...	[more]
RS4X_CERAE	3.487e-80	72.18	40S ribosomal protein S4, X isoform OS=Cercopithec...	[more]
RS4Y1_PONPY	7.739e-80	72.93	40S ribosomal protein S4, Y isoform 1 OS=Pongo pyg...	[more]
RS4_IXOSC	7.740e-80	77.44	40S ribosomal protein S4 OS=Ixodes scapularis GN=R...	[more]
RS4_CANAL	1.009e-79	73.88	40S ribosomal protein S4 OS=Candida albicans GN=RP...	[more]
RS4X_DANRE	2.921e-79	69.92	40S ribosomal protein S4, X isoform OS=Danio rerio...	[more]

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Properties


Property Name	Value
Genbank description	C34104C07EF PostHarvP1 Citrus clementina cDNA clone C34104C07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931359 ID=FC931359; Name=FC931359; organism=Citrus clementina; type=EST; length=679bp
CTTCTCGGCTTGAGCATTCTCTTTCGACACTCCGACCACCTAACCTTCAG
TCGACAAATCAGTCAAAATGCGCGGCCCCGGAAAGCACCAGAAGCGCCTC
AGCGCGCCCTCGCACTGGCTCTTGGACAAAATGTCCGGAACCTACGCGCC
CAAGGCCTCCCCCGGTCCCCACAAGCTCCGGGACTGCCTTCCCCTGATTG
TCTTCATCCGTAACCGTCTCAAGTACGCCCTGAACGGTCGCGAGGTCAAG
GCCATCATGATGCAGCGTCTGGTCACAGGTTGACGGCAAGGTCCGCACCG
ACACCACCTACCCCGCTGGATTCATGGACGTCATCTCCCTCGAGAAGACC
GGCGAGCACTTCCGTCTCGTTTACGACACCAAGGGTCGCTTCACCGTCCA
CCGTATTCAGGCTGAGGAGGCTGAGTACAAGCTCTGCAAGGTCAAGCGTG
TTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTACGCACGATGCGCGA
ACCATCCGCTACCCCGACCCTGCCATCAAGGTCAACGACACCGTCAAGGT
TGACATTGCCACTGGCAAGATCCTCGACTTCGTCAAGTTCGACTCCGGTG
TTGTCATCATGGCCACTGGTGGTCGCAACATGGGTCGTGTTGGTGTCATC
ACTCACCGTGAGCGTCACGACGGTGGTTT