FC931359
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 7.056e-72 Identity = 88/132 (66.67%), Postives = 111/132 (84.09%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674 VDGKVRTD TYPAGFMDV+S+ KT E+FRL+YDTKGRF +H ++ EE+++KLCKV+ VQ G+ GIP+L T+D RTIRYPDP IK NDT+K+D+ + KI+DF+KFD G V+M TGGRN GRVGVI +RE+H G Sbjct: 72 VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 203 HSP 2 Score: 97.8265 bits (242), Expect = 7.056e-72 Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 RG KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPL++ +RNRLKYAL REV +I+MQR V Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQV 70
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4) HSP 1 Score: 194.897 bits (494), Expect = 7.057e-72 Identity = 89/133 (66.92%), Postives = 111/133 (83.46%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674 QVDGKVRTD TYPAGFMDV+S+ KT E+FRL+YDTKGRF +H I+ EEA++KLCKV+ +Q G+ GIP+L T+D RTIRYPDP IK NDT+K+D+ KI++F+KFD G V+M TGGRN GRVGVI +RE+H G Sbjct: 71 QVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 203 HSP 2 Score: 97.4413 bits (241), Expect = 7.057e-72 Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQR 268 RG KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPL++ IRNRLKYAL REV +I+MQR Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 7.057e-72 Identity = 89/133 (66.92%), Postives = 111/133 (83.46%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674 QVDGKVRTD TYPAGFMDV+S+ KT E+FRL+YDTKGRF +H I+ EEA++KLCKV+ +Q G+ GIP+L T+D RTIRYPDP IK NDT+K+D+ KI++F+KFD G V+M TGGRN GRVGVI +RE+H G Sbjct: 71 QVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 203 HSP 2 Score: 97.4413 bits (241), Expect = 7.057e-72 Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQR 268 RG KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPL++ IRNRLKYAL REV +I+MQR Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 1.565e-71 Identity = 88/132 (66.67%), Postives = 108/132 (81.82%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674 VDGKVRTD TYPAGFMDV+S+ KT E FRL+YDTKGRF +H I +E ++KLCKV+ VQ G+ GIP+L T+D RTIRYPDP IK NDT+K+D+ + KI+DF+KFD G V+M TGGRN GRVGVI +RE+H G Sbjct: 72 VDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 203 HSP 2 Score: 98.2117 bits (243), Expect = 1.565e-71 Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 RG KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPLI+ +RNRLKYAL REV AI+MQR V Sbjct: 3 RGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHV 70
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3) HSP 1 Score: 176.792 bits (447), Expect = 9.165e-69 Identity = 81/133 (60.90%), Postives = 104/133 (78.20%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674 +VDGKVRTD YPAGFMDVIS+EKT E+FRL++D KGRFT+ RI EEA++KL +V RV+ G GIP++ T D RTIRYPDPAI ++DT+K+DI +GKI F+ F+ + M GG N+GRVG +THRE+H G Sbjct: 71 KVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVGGHNLGRVGAVTHREKHPG 203 HSP 2 Score: 105.145 bits (261), Expect = 9.165e-69 Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 RGP KH KRL+AP+HW+LDK+SG +AP+ S GPHKLR+CLPLI+ +RNRLKYAL +EV I+MQRLV Sbjct: 3 RGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLV 70
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 4.112e-66 Identity = 81/133 (60.90%), Postives = 103/133 (77.44%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674 +VDGKVRT +P GFMDV+++E+T E+FR++YDTKGR+ VHRIQA EA++KLCKVK V+ G+P L T D RTIRYPDP +KVNDT+ +I+T KI D VKF+ G + TGGRN+GRVG+I HRER G Sbjct: 70 RVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPG 202 HSP 2 Score: 100.523 bits (249), Expect = 4.112e-66 Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 2 Query: 68 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 MRGP KH KRL+APSHW+LDK+ G +A + +PGPHKLR+ LPL +F+RNRLKYALN E K I+ QR+V Sbjct: 1 MRGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVV 69
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 2.401e-63 Identity = 78/132 (59.09%), Postives = 101/132 (76.52%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674 VDGK+ + DV+S+ KT E+FRL+YDTKGRF +H I+ EE+++KLCKV+ VQ G+ GIP++ T+D RTIRYPDP IK NDT+K+D+ T KI DF+KFD G V+M TGGRN GRVGVI +RE+H G Sbjct: 72 VDGKIH----FCIRLSDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 199 HSP 2 Score: 97.4413 bits (241), Expect = 2.401e-63 Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQR 268 RG KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPLI+ +RNRLKYAL REV +I+MQR Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQR 68
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 2.751e-52 Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674 VD KVR D YP G MDV+ +EKT + FR++YDTKGRF + + EEA+YKL KV +G IP++VTHD+RTIR+P+P IK+ DT+K D+ KI +F +SG V G N+GRVG+I H E+H G Sbjct: 73 VDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQG 204 HSP 2 Score: 80.4925 bits (197), Expect = 2.751e-52 Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259 RGP KH KR++AP W+L+K+ G +A + S GPHKLR+ LPL V ++ RL YALNGR+V I+ Sbjct: 2 RGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLIL 64
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 2.863e-35 Identity = 53/125 (42.40%), Postives = 85/125 (68.00%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650 +V+G+VRT++ +P G DV+S+EKTGEHFR++Y+ +F +HRI +EEA Y+L KV + + GIP++V+ +IR+ DPAI + T+K+ T K+++++ VI + G+ GRVGVI Sbjct: 71 KVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTK-KYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI 194 HSP 2 Score: 59.6918 bits (143), Expect = 2.863e-35 Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 2 Query: 74 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQR 268 G H KR +AP W+LDK GT+A + GPHK +C+PL I L+YA N +E+ I+ ++ Sbjct: 4 GHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEK 68
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.290e-28 Identity = 48/124 (38.71%), Postives = 72/124 (58.06%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650 VDG+ R + +P GFMDV+S+ +TG+ +R++ D +GR +H I E A +KLCK+ KGG L HD R D +V D VK+ I +IL+ + F+ + + TGGR+ G +G I Sbjct: 73 VDGRPRKNYKFPVGFMDVVSIPRTGDVYRVLPDERGRLVLHPIDEENAGFKLCKIVNKTTIKGGRTQLNLHDGRNY-LSDDEFRVGDVVKLSIPEQEILERIPFEKDSLGLVTGGRHTGEIGKI 195 HSP 2 Score: 54.6842 bits (130), Expect = 1.290e-28 Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 2 Query: 83 KHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259 KH KR +P HW + + K SPGPH + + LPL++ +R+ LK A N RE + I+ Sbjct: 8 KHLKRFKSPVHWPIHPKEYKWTVKPSPGPHAIENSLPLMIIVRDILKVADNAREARKII 66 The following BLAST results are available for this feature:
BLAST of FC931359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931359 ID=FC931359; Name=FC931359; organism=Citrus clementina; type=EST; length=679bpback to top |