FC931359

Overview
NameFC931359
Unique NameFC931359
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 7.056e-72
Identity = 88/132 (66.67%), Postives = 111/132 (84.09%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            VDGKVRTD TYPAGFMDV+S+ KT E+FRL+YDTKGRF +H ++ EE+++KLCKV+ VQ G+ GIP+L T+D RTIRYPDP IK NDT+K+D+ + KI+DF+KFD G V+M TGGRN GRVGVI +RE+H G
Sbjct:   72 VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 203          

HSP 2 Score: 97.8265 bits (242), Expect = 7.056e-72
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 2
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RG  KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPL++ +RNRLKYAL  REV +I+MQR V
Sbjct:    3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQV 70          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 194.897 bits (494), Expect = 7.057e-72
Identity = 89/133 (66.92%), Postives = 111/133 (83.46%), Query Frame = 3
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            QVDGKVRTD TYPAGFMDV+S+ KT E+FRL+YDTKGRF +H I+ EEA++KLCKV+ +Q G+ GIP+L T+D RTIRYPDP IK NDT+K+D+   KI++F+KFD G V+M TGGRN GRVGVI +RE+H G
Sbjct:   71 QVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 203          

HSP 2 Score: 97.4413 bits (241), Expect = 7.057e-72
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 2
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQR 268
            RG  KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPL++ IRNRLKYAL  REV +I+MQR
Sbjct:    3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 7.057e-72
Identity = 89/133 (66.92%), Postives = 111/133 (83.46%), Query Frame = 3
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            QVDGKVRTD TYPAGFMDV+S+ KT E+FRL+YDTKGRF +H I+ EEA++KLCKV+ +Q G+ GIP+L T+D RTIRYPDP IK NDT+K+D+   KI++F+KFD G V+M TGGRN GRVGVI +RE+H G
Sbjct:   71 QVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 203          

HSP 2 Score: 97.4413 bits (241), Expect = 7.057e-72
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 2
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQR 268
            RG  KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPL++ IRNRLKYAL  REV +I+MQR
Sbjct:    3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.565e-71
Identity = 88/132 (66.67%), Postives = 108/132 (81.82%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            VDGKVRTD TYPAGFMDV+S+ KT E FRL+YDTKGRF +H I  +E ++KLCKV+ VQ G+ GIP+L T+D RTIRYPDP IK NDT+K+D+ + KI+DF+KFD G V+M TGGRN GRVGVI +RE+H G
Sbjct:   72 VDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 203          

HSP 2 Score: 98.2117 bits (243), Expect = 1.565e-71
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 2
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RG  KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPLI+ +RNRLKYAL  REV AI+MQR V
Sbjct:    3 RGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHV 70          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 9.165e-69
Identity = 81/133 (60.90%), Postives = 104/133 (78.20%), Query Frame = 3
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            +VDGKVRTD  YPAGFMDVIS+EKT E+FRL++D KGRFT+ RI  EEA++KL +V RV+ G  GIP++ T D RTIRYPDPAI ++DT+K+DI +GKI  F+ F+   + M  GG N+GRVG +THRE+H G
Sbjct:   71 KVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVGGHNLGRVGAVTHREKHPG 203          

HSP 2 Score: 105.145 bits (261), Expect = 9.165e-69
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 2
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            RGP KH KRL+AP+HW+LDK+SG +AP+ S GPHKLR+CLPLI+ +RNRLKYAL  +EV  I+MQRLV
Sbjct:    3 RGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLV 70          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 4.112e-66
Identity = 81/133 (60.90%), Postives = 103/133 (77.44%), Query Frame = 3
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            +VDGKVRT   +P GFMDV+++E+T E+FR++YDTKGR+ VHRIQA EA++KLCKVK V+    G+P L T D RTIRYPDP +KVNDT+  +I+T KI D VKF+ G +   TGGRN+GRVG+I HRER  G
Sbjct:   70 RVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPG 202          

HSP 2 Score: 100.523 bits (249), Expect = 4.112e-66
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 2
Query:   68 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            MRGP KH KRL+APSHW+LDK+ G +A + +PGPHKLR+ LPL +F+RNRLKYALN  E K I+ QR+V
Sbjct:    1 MRGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVV 69          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.401e-63
Identity = 78/132 (59.09%), Postives = 101/132 (76.52%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            VDGK+     +     DV+S+ KT E+FRL+YDTKGRF +H I+ EE+++KLCKV+ VQ G+ GIP++ T+D RTIRYPDP IK NDT+K+D+ T KI DF+KFD G V+M TGGRN GRVGVI +RE+H G
Sbjct:   72 VDGKIH----FCIRLSDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 199          

HSP 2 Score: 97.4413 bits (241), Expect = 2.401e-63
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 2
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQR 268
            RG  KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPLI+ +RNRLKYAL  REV +I+MQR
Sbjct:    3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQR 68          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.751e-52
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            VD KVR D  YP G MDV+ +EKT + FR++YDTKGRF +  +  EEA+YKL KV    +G   IP++VTHD+RTIR+P+P IK+ DT+K D+   KI +F   +SG V     G N+GRVG+I H E+H G
Sbjct:   73 VDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQG 204          

HSP 2 Score: 80.4925 bits (197), Expect = 2.751e-52
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 2
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259
            RGP KH KR++AP  W+L+K+ G +A + S GPHKLR+ LPL V ++ RL YALNGR+V  I+
Sbjct:    2 RGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLIL 64          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.863e-35
Identity = 53/125 (42.40%), Postives = 85/125 (68.00%), Query Frame = 3
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650
            +V+G+VRT++ +P G  DV+S+EKTGEHFR++Y+   +F +HRI +EEA Y+L KV + +    GIP++V+    +IR+ DPAI +  T+K+   T K+++++      VI  + G+  GRVGVI
Sbjct:   71 KVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTK-KYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI 194          

HSP 2 Score: 59.6918 bits (143), Expect = 2.863e-35
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 2
Query:   74 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQR 268
            G   H KR +AP  W+LDK  GT+A   + GPHK  +C+PL   I   L+YA N +E+  I+ ++
Sbjct:    4 GHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEK 68          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.290e-28
Identity = 48/124 (38.71%), Postives = 72/124 (58.06%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650
            VDG+ R +  +P GFMDV+S+ +TG+ +R++ D +GR  +H I  E A +KLCK+      KGG   L  HD R     D   +V D VK+ I   +IL+ + F+   + + TGGR+ G +G I
Sbjct:   73 VDGRPRKNYKFPVGFMDVVSIPRTGDVYRVLPDERGRLVLHPIDEENAGFKLCKIVNKTTIKGGRTQLNLHDGRNY-LSDDEFRVGDVVKLSIPEQEILERIPFEKDSLGLVTGGRHTGEIGKI 195          

HSP 2 Score: 54.6842 bits (130), Expect = 1.290e-28
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 2
Query:   83 KHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259
            KH KR  +P HW +      +  K SPGPH + + LPL++ +R+ LK A N RE + I+
Sbjct:    8 KHLKRFKSPVHWPIHPKEYKWTVKPSPGPHAIENSLPLMIIVRDILKVADNAREARKII 66          
The following BLAST results are available for this feature:
BLAST of FC931359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4_SOLTU7.056e-7266.6740S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS42_ARATH7.057e-7266.9240S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH7.057e-7266.9240S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS4_GOSHI1.565e-7166.6740S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]
RS4_DICDI9.165e-6960.9040S ribosomal protein S4 OS=Dictyostelium discoide... [more]
RS4_CAEEL4.112e-6660.9040S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_PRUAR2.401e-6359.0940S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS4_TETTH2.751e-5251.5240S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_ENCCU2.863e-3542.4040S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]
RS4E_METTH1.290e-2838.7130S ribosomal protein S4e OS=Methanobacterium ther... [more]

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Properties
Property NameValue
Genbank descriptionC34104C07EF PostHarvP1 Citrus clementina cDNA clone C34104C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931359 ID=FC931359; Name=FC931359; organism=Citrus clementina; type=EST; length=679bp
CTTCTCGGCTTGAGCATTCTCTTTCGACACTCCGACCACCTAACCTTCAG
TCGACAAATCAGTCAAAATGCGCGGCCCCGGAAAGCACCAGAAGCGCCTC
AGCGCGCCCTCGCACTGGCTCTTGGACAAAATGTCCGGAACCTACGCGCC
CAAGGCCTCCCCCGGTCCCCACAAGCTCCGGGACTGCCTTCCCCTGATTG
TCTTCATCCGTAACCGTCTCAAGTACGCCCTGAACGGTCGCGAGGTCAAG
GCCATCATGATGCAGCGTCTGGTCACAGGTTGACGGCAAGGTCCGCACCG
ACACCACCTACCCCGCTGGATTCATGGACGTCATCTCCCTCGAGAAGACC
GGCGAGCACTTCCGTCTCGTTTACGACACCAAGGGTCGCTTCACCGTCCA
CCGTATTCAGGCTGAGGAGGCTGAGTACAAGCTCTGCAAGGTCAAGCGTG
TTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTACGCACGATGCGCGA
ACCATCCGCTACCCCGACCCTGCCATCAAGGTCAACGACACCGTCAAGGT
TGACATTGCCACTGGCAAGATCCTCGACTTCGTCAAGTTCGACTCCGGTG
TTGTCATCATGGCCACTGGTGGTCGCAACATGGGTCGTGTTGGTGTCATC
ACTCACCGTGAGCGTCACGACGGTGGTTT
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