FC931359
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 1.406e-23 Identity = 50/133 (37.59%), Postives = 70/133 (52.63%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI--RYPDP------AIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650 +VDG VR D +P GFMDVI + TGE FR++ F +H I EE + K +++ KGG L HD R I R DP + DT+ + + +I +KF G + + GGRN+GRVGV+ Sbjct: 72 RVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVV 204 HSP 2 Score: 46.595 bits (109), Expect = 1.406e-23 Identity = 22/64 (34.38%), Postives = 34/64 (53.12%), Query Frame = 2 Query: 74 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQ 265 G + K L+AP W + + +A K PGPH LPL++ +RN L YA RE + ++ + Sbjct: 5 GGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISE 68
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.506e-22 Identity = 40/122 (32.79%), Postives = 67/122 (54.92%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVG 644 VDGK R D + G MDVIS+ + G ++R+V D + I E++ KL KV + +GG L +HD R +K D++ +++ + ++D ++FD+G ++ T GR GR+G Sbjct: 73 VDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVLVTRGRMAGRIG 194 HSP 2 Score: 51.6026 bits (122), Expect = 1.506e-22 Identity = 22/67 (32.84%), Postives = 39/67 (58.21%), Query Frame = 2 Query: 74 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 G +H K L+AP ++ + K + K SPGPH + + +PL++ +R+ LK A RE + I+ + + Sbjct: 5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKI 71
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.616e-22 Identity = 41/124 (33.06%), Postives = 69/124 (55.65%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650 VDG VR D +P G DV+++ K + +R+++D KGR+ + E+A+ KL K+ L +GG L D I + K D++ + I +++D +KF+ G ++M TGG + G +G I Sbjct: 68 VDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGGKVQLNLFDGTNILGSND-YKTKDSILLRIPEKEVVDHLKFEEGALVMITGGTHAGEIGRI 188 HSP 2 Score: 50.0618 bits (118), Expect = 5.616e-22 Identity = 24/58 (41.38%), Postives = 37/58 (63.79%), Query Frame = 2 Query: 86 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259 HQKRLSAP + + + + K SPGPH ++ +PL+V +R+ L+ A GRE + I+ Sbjct: 5 HQKRLSAPKTYKIPRKVSKWVVKPSPGPHN-KEAIPLLVLVRDFLELADTGREARRII 61
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.904e-20 Identity = 44/126 (34.92%), Postives = 62/126 (49.21%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPA---IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVG 644 ++DG +R D +P G MDV+ + TGE +R+V D K + + I +EEA KL +V+ KGG L HD R + IK DTV D+ I + F G + T G N+G G Sbjct: 67 KIDGVIRKDYKFPVGLMDVVEIVPTGEIYRVVPDEKKYYALIPISSEEATLKLLRVEGKTAVKGGKLQLHFHDGRNLIVSQDVGRHIKTFDTVLYDLQNKNIKMHIPFKLGAYAVVTRGGNVGFSG 192 HSP 2 Score: 50.0618 bits (118), Expect = 2.904e-20 Identity = 26/64 (40.62%), Postives = 38/64 (59.38%), Query Frame = 2 Query: 86 HQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 H +R +AP W + K+ G + ++SPGPH L LPL + IR+ LKYA RE + I+ + V Sbjct: 3 HLRRTTAPYWWPIPRKIGGVWVVRSSPGPHSLAYSLPLAIIIRDVLKYAKTMREARYIISRGYV 66
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.379e-19 Identity = 43/128 (33.59%), Postives = 64/128 (50.00%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDT---VKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650 +VDGKVR D YP G MDVI L E++R++ D RI EA K+C+++ + K G L HD R I + +T V V++ GK++D+ ++A G N+GR G + Sbjct: 66 KVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTL 193 HSP 2 Score: 44.2838 bits (103), Expect = 2.379e-19 Identity = 19/58 (32.76%), Postives = 32/58 (55.17%), Query Frame = 2 Query: 86 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259 H +R ++P W +++ ++ K SPGPH +PL V +R+ YA RE + I+ Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLII 60
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 5.234e-19 Identity = 40/124 (32.26%), Postives = 62/124 (50.00%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650 VDG R D +P G DVI+L E +R++ D KGR T+H++ E KLC++ KGG L +D I D++ + I +++ +KF+ G + M GG++ G G I Sbjct: 67 VDGIPRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLN-ETNVNKLCRINNKTTVKGGKFQLNLNDGTNI-IGSNEYGTKDSLILSIPDKQVVKHLKFEVGNLAMVVGGQHSGETGKI 188 HSP 2 Score: 50.0618 bits (118), Expect = 5.234e-19 Identity = 25/60 (41.67%), Postives = 31/60 (51.67%), Query Frame = 2 Query: 86 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQ 265 HQKRLS P W + K + PGPH LPL + IR+ LK N RE K I+ + Sbjct: 3 HQKRLSVPKSWKVGKKGNKWISTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSE 62
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.947e-18 Identity = 39/125 (31.20%), Postives = 61/125 (48.80%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVIT 653 VDG R D +P G DVI+L E +R+ D KGR +H++ A KLC++ KGG L +D I D++ + + +I+ ++F G + M GG++ G +G IT Sbjct: 67 VDGIPRKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGGKVQLNLNDGTNI-LGSNEYSTKDSLILSLPDKQIVKHLQFKVGNLAMVVGGQHSGEIGKIT 189 HSP 2 Score: 47.7506 bits (112), Expect = 1.947e-18 Identity = 25/60 (41.67%), Postives = 30/60 (50.00%), Query Frame = 2 Query: 86 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQ 265 HQKRLS P W K + PGPH LPL + IR+ LK N RE K I+ + Sbjct: 3 HQKRLSIPRSWKAGKKGYKWVSTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSE 62
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.531e-18 Identity = 42/129 (32.56%), Postives = 66/129 (51.16%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPA---IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVIT 653 +VDG VR + +P G MDV+ + TGE +R+V D + + + I +EEA+ KL +V+ KGG + HD R + P IK D+V D+ + + GV + T G N+G G ++ Sbjct: 67 KVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLGVYAVVTHGGNVGFHGQLS 195 HSP 2 Score: 45.4394 bits (106), Expect = 2.531e-18 Identity = 23/59 (38.98%), Postives = 35/59 (59.32%), Query Frame = 2 Query: 86 HQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259 H +R ++P W + K G +A + SPGPH L +PL + IR+ L+YA RE + I+ Sbjct: 3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMII 61
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.291e-18 Identity = 46/126 (36.51%), Postives = 62/126 (49.21%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART-IRYPDPAIKVN--DTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVG 644 +VDG VR D +P G MDVI + TGE +R+V D + + I + EA KL +V+ GG L HD R I PD K+ DT+ D+ I + GVV + T G N+G G Sbjct: 67 KVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGRNLITSPDMGAKIKTFDTILYDLENKTIKTHIPMKLGVVAVVTHGSNVGFSG 192 HSP 2 Score: 44.2838 bits (103), Expect = 3.291e-18 Identity = 24/59 (40.68%), Postives = 32/59 (54.24%), Query Frame = 2 Query: 86 HQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259 H +R AP W + K G + K SPGPH LPL + IR+ L+YA RE + I+ Sbjct: 3 HLRRSLAPYWWPIPRKAGGVWVVKPSPGPHSFAYSLPLAIVIRDVLRYAKTLREARYIV 61
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 9.407e-18 Identity = 45/128 (35.16%), Postives = 61/128 (47.66%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR---TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650 +VDG VR D +P G MDVI + TGE +R+V D + + I EEA KL +V+ + KGG L HD R T IK D+V D+ I + GV + G N+G G + Sbjct: 67 KVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194 HSP 2 Score: 45.8246 bits (107), Expect = 9.407e-18 Identity = 25/64 (39.06%), Postives = 35/64 (54.69%), Query Frame = 2 Query: 86 HQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 H +R AP+ W + K G + + SPGPH L LPL + IR+ LKYA E + I+ + V Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYV 66 The following BLAST results are available for this feature:
BLAST of FC931359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931359 ID=FC931359; Name=FC931359; organism=Citrus clementina; type=EST; length=679bpback to top |