FC931359

Overview
NameFC931359
Unique NameFC931359
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.406e-23
Identity = 50/133 (37.59%), Postives = 70/133 (52.63%), Query Frame = 3
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI--RYPDP------AIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650
            +VDG VR D  +P GFMDVI +  TGE FR++      F +H I  EE + K  +++     KGG   L  HD R I  R  DP        +  DT+ + +   +I   +KF  G + +  GGRN+GRVGV+
Sbjct:   72 RVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVV 204          

HSP 2 Score: 46.595 bits (109), Expect = 1.406e-23
Identity = 22/64 (34.38%), Postives = 34/64 (53.12%), Query Frame = 2
Query:   74 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQ 265
            G  +  K L+AP  W + +    +A K  PGPH     LPL++ +RN L YA   RE + ++ +
Sbjct:    5 GGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISE 68          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.506e-22
Identity = 40/122 (32.79%), Postives = 67/122 (54.92%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVG 644
            VDGK R D  +  G MDVIS+ + G ++R+V D      +  I   E++ KL KV   +  +GG   L +HD R        +K  D++ +++ +  ++D ++FD+G  ++ T GR  GR+G
Sbjct:   73 VDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVLVTRGRMAGRIG 194          

HSP 2 Score: 51.6026 bits (122), Expect = 1.506e-22
Identity = 22/67 (32.84%), Postives = 39/67 (58.21%), Query Frame = 2
Query:   74 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            G  +H K L+AP ++ + K    +  K SPGPH + + +PL++ +R+ LK A   RE + I+  + +
Sbjct:    5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKI 71          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.616e-22
Identity = 41/124 (33.06%), Postives = 69/124 (55.65%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650
            VDG VR D  +P G  DV+++ K  + +R+++D KGR+    +  E+A+ KL K+    L +GG   L   D   I   +   K  D++ + I   +++D +KF+ G ++M TGG + G +G I
Sbjct:   68 VDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGGKVQLNLFDGTNILGSND-YKTKDSILLRIPEKEVVDHLKFEEGALVMITGGTHAGEIGRI 188          

HSP 2 Score: 50.0618 bits (118), Expect = 5.616e-22
Identity = 24/58 (41.38%), Postives = 37/58 (63.79%), Query Frame = 2
Query:   86 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259
            HQKRLSAP  + + +    +  K SPGPH  ++ +PL+V +R+ L+ A  GRE + I+
Sbjct:    5 HQKRLSAPKTYKIPRKVSKWVVKPSPGPHN-KEAIPLLVLVRDFLELADTGREARRII 61          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.904e-20
Identity = 44/126 (34.92%), Postives = 62/126 (49.21%), Query Frame = 3
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPA---IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVG 644
            ++DG +R D  +P G MDV+ +  TGE +R+V D K  + +  I +EEA  KL +V+     KGG   L  HD R +         IK  DTV  D+    I   + F  G   + T G N+G  G
Sbjct:   67 KIDGVIRKDYKFPVGLMDVVEIVPTGEIYRVVPDEKKYYALIPISSEEATLKLLRVEGKTAVKGGKLQLHFHDGRNLIVSQDVGRHIKTFDTVLYDLQNKNIKMHIPFKLGAYAVVTRGGNVGFSG 192          

HSP 2 Score: 50.0618 bits (118), Expect = 2.904e-20
Identity = 26/64 (40.62%), Postives = 38/64 (59.38%), Query Frame = 2
Query:   86 HQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            H +R +AP  W +  K+ G +  ++SPGPH L   LPL + IR+ LKYA   RE + I+ +  V
Sbjct:    3 HLRRTTAPYWWPIPRKIGGVWVVRSSPGPHSLAYSLPLAIIIRDVLKYAKTMREARYIISRGYV 66          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.379e-19
Identity = 43/128 (33.59%), Postives = 64/128 (50.00%), Query Frame = 3
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDT---VKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650
            +VDGKVR D  YP G MDVI L    E++R++ D        RI   EA  K+C+++   + K G   L  HD R I       +  +T   V V++  GK++D+        ++A  G N+GR G +
Sbjct:   66 KVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTL 193          

HSP 2 Score: 44.2838 bits (103), Expect = 2.379e-19
Identity = 19/58 (32.76%), Postives = 32/58 (55.17%), Query Frame = 2
Query:   86 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259
            H +R ++P  W +++    ++ K SPGPH     +PL V +R+   YA   RE + I+
Sbjct:    3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLII 60          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.234e-19
Identity = 40/124 (32.26%), Postives = 62/124 (50.00%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650
            VDG  R D  +P G  DVI+L    E +R++ D KGR T+H++  E    KLC++      KGG   L  +D   I          D++ + I   +++  +KF+ G + M  GG++ G  G I
Sbjct:   67 VDGIPRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLN-ETNVNKLCRINNKTTVKGGKFQLNLNDGTNI-IGSNEYGTKDSLILSIPDKQVVKHLKFEVGNLAMVVGGQHSGETGKI 188          

HSP 2 Score: 50.0618 bits (118), Expect = 5.234e-19
Identity = 25/60 (41.67%), Postives = 31/60 (51.67%), Query Frame = 2
Query:   86 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQ 265
            HQKRLS P  W + K    +     PGPH     LPL + IR+ LK   N RE K I+ +
Sbjct:    3 HQKRLSVPKSWKVGKKGNKWISTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSE 62          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.947e-18
Identity = 39/125 (31.20%), Postives = 61/125 (48.80%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVIT 653
            VDG  R D  +P G  DVI+L    E +R+  D KGR  +H++ A     KLC++      KGG   L  +D   I          D++ + +   +I+  ++F  G + M  GG++ G +G IT
Sbjct:   67 VDGIPRKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGGKVQLNLNDGTNI-LGSNEYSTKDSLILSLPDKQIVKHLQFKVGNLAMVVGGQHSGEIGKIT 189          

HSP 2 Score: 47.7506 bits (112), Expect = 1.947e-18
Identity = 25/60 (41.67%), Postives = 30/60 (50.00%), Query Frame = 2
Query:   86 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQ 265
            HQKRLS P  W   K    +     PGPH     LPL + IR+ LK   N RE K I+ +
Sbjct:    3 HQKRLSIPRSWKAGKKGYKWVSTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSE 62          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.531e-18
Identity = 42/129 (32.56%), Postives = 66/129 (51.16%), Query Frame = 3
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPA---IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVIT 653
            +VDG VR +  +P G MDV+ +  TGE +R+V D +  + +  I +EEA+ KL +V+     KGG   +  HD R +  P      IK  D+V  D+    +   +    GV  + T G N+G  G ++
Sbjct:   67 KVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLGVYAVVTHGGNVGFHGQLS 195          

HSP 2 Score: 45.4394 bits (106), Expect = 2.531e-18
Identity = 23/59 (38.98%), Postives = 35/59 (59.32%), Query Frame = 2
Query:   86 HQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259
            H +R ++P  W +  K  G +A + SPGPH L   +PL + IR+ L+YA   RE + I+
Sbjct:    3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMII 61          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.291e-18
Identity = 46/126 (36.51%), Postives = 62/126 (49.21%), Query Frame = 3
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART-IRYPDPAIKVN--DTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVG 644
            +VDG VR D  +P G MDVI +  TGE +R+V D    + +  I + EA  KL +V+      GG   L  HD R  I  PD   K+   DT+  D+    I   +    GVV + T G N+G  G
Sbjct:   67 KVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGRNLITSPDMGAKIKTFDTILYDLENKTIKTHIPMKLGVVAVVTHGSNVGFSG 192          

HSP 2 Score: 44.2838 bits (103), Expect = 3.291e-18
Identity = 24/59 (40.68%), Postives = 32/59 (54.24%), Query Frame = 2
Query:   86 HQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259
            H +R  AP  W +  K  G +  K SPGPH     LPL + IR+ L+YA   RE + I+
Sbjct:    3 HLRRSLAPYWWPIPRKAGGVWVVKPSPGPHSFAYSLPLAIVIRDVLRYAKTLREARYIV 61          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 9.407e-18
Identity = 45/128 (35.16%), Postives = 61/128 (47.66%), Query Frame = 3
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR---TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650
            +VDG VR D  +P G MDVI +  TGE +R+V D    + +  I  EEA  KL +V+   + KGG   L  HD R   T       IK  D+V  D+    I   +    GV  +   G N+G  G +
Sbjct:   67 KVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194          

HSP 2 Score: 45.8246 bits (107), Expect = 9.407e-18
Identity = 25/64 (39.06%), Postives = 35/64 (54.69%), Query Frame = 2
Query:   86 HQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            H +R  AP+ W +  K  G +  + SPGPH L   LPL + IR+ LKYA    E + I+ +  V
Sbjct:    3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYV 66          
The following BLAST results are available for this feature:
BLAST of FC931359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_AERPE1.406e-2337.5930S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]
RS4E_KORCO1.506e-2232.7930S ribosomal protein S4e OS=Korarchaeum cryptofil... [more]
RS4E_ARCFU5.616e-2233.0630S ribosomal protein S4e OS=Archaeoglobus fulgidu... [more]
RS4E_PYRIL2.904e-2034.9230S ribosomal protein S4e OS=Pyrobaculum islandicu... [more]
RS4E_CALMQ2.379e-1933.5930S ribosomal protein S4e OS=Caldivirga maquilinge... [more]
RS4E_METAC5.234e-1932.2630S ribosomal protein S4e OS=Methanosarcina acetiv... [more]
RS4E_METBF1.947e-1831.2030S ribosomal protein S4e OS=Methanosarcina barker... [more]
RS4E_THENV2.531e-1832.5630S ribosomal protein S4e OS=Thermoproteus neutrop... [more]
RS4E_PYRAR3.291e-1836.5130S ribosomal protein S4e OS=Pyrobaculum arsenatic... [more]
RS4E_PYRAE9.407e-1835.1630S ribosomal protein S4e OS=Pyrobaculum aerophilu... [more]

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Properties
Property NameValue
Genbank descriptionC34104C07EF PostHarvP1 Citrus clementina cDNA clone C34104C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931359 ID=FC931359; Name=FC931359; organism=Citrus clementina; type=EST; length=679bp
CTTCTCGGCTTGAGCATTCTCTTTCGACACTCCGACCACCTAACCTTCAG
TCGACAAATCAGTCAAAATGCGCGGCCCCGGAAAGCACCAGAAGCGCCTC
AGCGCGCCCTCGCACTGGCTCTTGGACAAAATGTCCGGAACCTACGCGCC
CAAGGCCTCCCCCGGTCCCCACAAGCTCCGGGACTGCCTTCCCCTGATTG
TCTTCATCCGTAACCGTCTCAAGTACGCCCTGAACGGTCGCGAGGTCAAG
GCCATCATGATGCAGCGTCTGGTCACAGGTTGACGGCAAGGTCCGCACCG
ACACCACCTACCCCGCTGGATTCATGGACGTCATCTCCCTCGAGAAGACC
GGCGAGCACTTCCGTCTCGTTTACGACACCAAGGGTCGCTTCACCGTCCA
CCGTATTCAGGCTGAGGAGGCTGAGTACAAGCTCTGCAAGGTCAAGCGTG
TTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTACGCACGATGCGCGA
ACCATCCGCTACCCCGACCCTGCCATCAAGGTCAACGACACCGTCAAGGT
TGACATTGCCACTGGCAAGATCCTCGACTTCGTCAAGTTCGACTCCGGTG
TTGTCATCATGGCCACTGGTGGTCGCAACATGGGTCGTGTTGGTGTCATC
ACTCACCGTGAGCGTCACGACGGTGGTTT
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