FC931359
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 8.603e-15 Identity = 40/127 (31.50%), Postives = 61/127 (48.03%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI---RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650 VDGKVR D YP G MD++S+ +FR++ D +I A+EA YK ++ K G L D R I + K T+K+++ + +ILD + GGRN+G G++ Sbjct: 67 VDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAIFVGGRNVGIHGIV 193 HSP 2 Score: 37.3502 bits (85), Expect = 8.603e-15 Identity = 20/58 (34.48%), Postives = 29/58 (50.00%), Query Frame = 2 Query: 86 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259 H R AP ++ K + + + GPH + +PL V IR+ LK A RE K I+ Sbjct: 3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHII 60
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.454e-14 Identity = 45/133 (33.83%), Postives = 65/133 (48.87%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674 +VDGK + + GFMDVI E GE +R+VY+ +G + + E A KL KV+ + G L THD RT D + KV D V + KI + +K G T G ++ + G I+ E +G Sbjct: 67 KVDGKTVREKKFAVGFMDVI--EINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEG 197 HSP 2 Score: 27.335 bits (59), Expect = 1.454e-14 Identity = 17/61 (27.87%), Postives = 27/61 (44.26%), Query Frame = 2 Query: 92 KRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 KRL + + + + P +PG H + L+ IR+ LK + RE I+ LV Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLV 66
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.190e-14 Identity = 42/129 (32.56%), Postives = 63/129 (48.84%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRE 662 +VDGKV + + GFMDVI + +GE +R+VY+ +G + + A K +VK + G L HD R + D +I V D V + KI + +K G TGG ++G G I+ E Sbjct: 67 KVDGKVVKERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGGSHVGETGTISKIE 193 HSP 2 Score: 30.4166 bits (67), Expect = 3.190e-14 Identity = 18/61 (29.51%), Postives = 28/61 (45.90%), Query Frame = 2 Query: 92 KRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 KRL P + + + + P PG HK + L+ IR+ L+ + RE I+ LV Sbjct: 6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLV 66
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14 Identity = 45/124 (36.29%), Postives = 68/124 (54.84%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650 VDG R + +P GFMDVIS+ K + FR++ D KGR + I+ +++ +KL K+ KGG L R I D K D + ++I KI D +KF+ G + + TGG+++ VG I Sbjct: 73 VDGIPRKNHRFPVGFMDVISIPKINKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNI-IADDDYKTGDVLLLNIPEQKISDSIKFEEGALGLITGGKHISEVGKI 195
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 5.377e-14 Identity = 43/133 (32.33%), Postives = 59/133 (44.36%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI--------RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVIT 653 VDGKVR D YP G MDV+ + R++ D T I E+A+YK ++ K G+ L D R I +Y P + T+K+++ KI GV M GGRN G G I+ Sbjct: 67 VDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTL---TTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKIS 196 HSP 2 Score: 33.4982 bits (75), Expect = 5.377e-14 Identity = 17/58 (29.31%), Postives = 29/58 (50.00%), Query Frame = 2 Query: 86 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259 H R AP + K + ++ GPHK+++ +PL + ++ LK RE K I+ Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRII 60
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 9.089e-14 Identity = 41/124 (33.06%), Postives = 61/124 (49.19%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650 VDGKV + GFMD +++ +G + + YD KG+ + E KL +VK KGG + HD T+ IK D+V V I +I+D +KF G + TGG ++G + I Sbjct: 68 VDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATI 189 HSP 2 Score: 35.039 bits (79), Expect = 9.089e-14 Identity = 19/61 (31.15%), Postives = 31/61 (50.82%), Query Frame = 2 Query: 92 KRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 K + AP + + S +A + PG HK +PL++ +R+ LK RE+ I+ LV Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLV 66
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11 Identity = 45/127 (35.43%), Postives = 63/127 (49.61%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--------TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMG 635 VDG R D YP G MDVISL E F +V D KGR +++I ++ KLCK++ + KGG L HD R + + K D V + I I+ V+F G + TGG+++G Sbjct: 73 VDGVKRKDHRYPTGLMDVISLPDANESFLVVLDEKGRIKLNKI--KDNTKKLCKIENKTVIKGGHIQLNLHDGRNQIVKLADATKAEEDIYKTGDCVILSIPEQSIVGHVQFGEGKLAYITGGKHVG 197
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11 Identity = 33/81 (40.74%), Postives = 53/81 (65.43%), Query Frame = 2 Query: 68 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMM--QRLVTG*RQGPHRH 304 ++GP KH KRL+AP++W L + T+ + SPGPH + LPL++ +R+ LKYA N RE K I+ + L+ G ++ ++H Sbjct: 3 IKGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKH 83
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11 Identity = 41/136 (30.15%), Postives = 68/136 (50.00%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--------TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRE 662 +DG R + +PAG MDV+S+ + E++ +++D GR ++ + ++A+ KLCK+ + KGG L HD R + + K D+V V I I+ V F G + TGG+++G I E Sbjct: 73 IDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLKK--TDKADAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVE 206 HSP 2 Score: 67.3958 bits (163), Expect = 7.954e-11 Identity = 32/81 (39.51%), Postives = 52/81 (64.20%), Query Frame = 2 Query: 68 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMM--QRLVTG*RQGPHRH 304 ++GP KH KRL+AP++W L + + + SPGPH + LPL++ +R+ LKYA N RE K I+ + L+ G ++ ++H Sbjct: 3 IKGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKH 83
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11 Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 2 Query: 68 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAI--MMQRLVTG*RQGPHRH 304 ++GP KH KRL+AP++W L + T+ + SPGPH + LPL++ +R+ LK A N RE K I M + L+ G ++ ++H Sbjct: 3 IKGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKH 83 The following BLAST results are available for this feature:
BLAST of FC931359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931359 ID=FC931359; Name=FC931359; organism=Citrus clementina; type=EST; length=679bpback to top |