FC931359

Overview
NameFC931359
Unique NameFC931359
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 8.603e-15
Identity = 40/127 (31.50%), Postives = 61/127 (48.03%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI---RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650
            VDGKVR D  YP G MD++S+     +FR++ D        +I A+EA YK  ++      K G   L   D R I   +      K   T+K+++ + +ILD          +  GGRN+G  G++
Sbjct:   67 VDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAIFVGGRNVGIHGIV 193          

HSP 2 Score: 37.3502 bits (85), Expect = 8.603e-15
Identity = 20/58 (34.48%), Postives = 29/58 (50.00%), Query Frame = 2
Query:   86 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259
            H  R  AP   ++ K    +  + + GPH +   +PL V IR+ LK A   RE K I+
Sbjct:    3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHII 60          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.454e-14
Identity = 45/133 (33.83%), Postives = 65/133 (48.87%), Query Frame = 3
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            +VDGK   +  +  GFMDVI  E  GE +R+VY+ +G   + +   E A  KL KV+   +  G    L THD RT    D + KV D   V +   KI + +K   G     T G ++ + G I+  E  +G
Sbjct:   67 KVDGKTVREKKFAVGFMDVI--EINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEG 197          

HSP 2 Score: 27.335 bits (59), Expect = 1.454e-14
Identity = 17/61 (27.87%), Postives = 27/61 (44.26%), Query Frame = 2
Query:   92 KRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            KRL       + + +  + P  +PG H     + L+  IR+ LK +   RE   I+   LV
Sbjct:    6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLV 66          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.190e-14
Identity = 42/129 (32.56%), Postives = 63/129 (48.84%), Query Frame = 3
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRE 662
            +VDGKV  +  +  GFMDVI +  +GE +R+VY+ +G   +     + A  K  +VK   +  G    L  HD R +   D +I V D V   +   KI + +K   G     TGG ++G  G I+  E
Sbjct:   67 KVDGKVVKERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGGSHVGETGTISKIE 193          

HSP 2 Score: 30.4166 bits (67), Expect = 3.190e-14
Identity = 18/61 (29.51%), Postives = 28/61 (45.90%), Query Frame = 2
Query:   92 KRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            KRL  P    + + +  + P   PG HK    + L+  IR+ L+ +   RE   I+   LV
Sbjct:    6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLV 66          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 45/124 (36.29%), Postives = 68/124 (54.84%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650
            VDG  R +  +P GFMDVIS+ K  + FR++ D KGR  +  I+ +++ +KL K+      KGG   L     R I   D   K  D + ++I   KI D +KF+ G + + TGG+++  VG I
Sbjct:   73 VDGIPRKNHRFPVGFMDVISIPKINKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNI-IADDDYKTGDVLLLNIPEQKISDSIKFEEGALGLITGGKHISEVGKI 195          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 5.377e-14
Identity = 43/133 (32.33%), Postives = 59/133 (44.36%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI--------RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVIT 653
            VDGKVR D  YP G MDV+ +       R++ D     T   I  E+A+YK  ++      K G+  L   D R I        +Y  P +    T+K+++   KI        GV  M  GGRN G  G I+
Sbjct:   67 VDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTL---TTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKIS 196          

HSP 2 Score: 33.4982 bits (75), Expect = 5.377e-14
Identity = 17/58 (29.31%), Postives = 29/58 (50.00%), Query Frame = 2
Query:   86 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259
            H  R  AP    + K    +  ++  GPHK+++ +PL + ++  LK     RE K I+
Sbjct:    3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRII 60          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 9.089e-14
Identity = 41/124 (33.06%), Postives = 61/124 (49.19%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650
            VDGKV  +     GFMD +++  +G  + + YD KG+  +     E    KL +VK     KGG   +  HD  T+      IK  D+V V I   +I+D +KF  G  +  TGG ++G +  I
Sbjct:   68 VDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATI 189          

HSP 2 Score: 35.039 bits (79), Expect = 9.089e-14
Identity = 19/61 (31.15%), Postives = 31/61 (50.82%), Query Frame = 2
Query:   92 KRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274
            K + AP    + + S  +A  + PG HK    +PL++ +R+ LK     RE+  I+   LV
Sbjct:    6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLV 66          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11
Identity = 45/127 (35.43%), Postives = 63/127 (49.61%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--------TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMG 635
            VDG  R D  YP G MDVISL    E F +V D KGR  +++I  ++   KLCK++   + KGG   L  HD R          +  +   K  D V + I    I+  V+F  G +   TGG+++G
Sbjct:   73 VDGVKRKDHRYPTGLMDVISLPDANESFLVVLDEKGRIKLNKI--KDNTKKLCKIENKTVIKGGHIQLNLHDGRNQIVKLADATKAEEDIYKTGDCVILSIPEQSIVGHVQFGEGKLAYITGGKHVG 197          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 33/81 (40.74%), Postives = 53/81 (65.43%), Query Frame = 2
Query:   68 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMM--QRLVTG*RQGPHRH 304
            ++GP KH KRL+AP++W L +   T+  + SPGPH +   LPL++ +R+ LKYA N RE K I+   + L+ G ++  ++H
Sbjct:    3 IKGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKH 83          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 41/136 (30.15%), Postives = 68/136 (50.00%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--------TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRE 662
            +DG  R +  +PAG MDV+S+ +  E++ +++D  GR ++ +   ++A+ KLCK+    + KGG   L  HD R          +  +   K  D+V V I    I+  V F  G +   TGG+++G    I   E
Sbjct:   73 IDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLKK--TDKADAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVE 206          

HSP 2 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 32/81 (39.51%), Postives = 52/81 (64.20%), Query Frame = 2
Query:   68 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMM--QRLVTG*RQGPHRH 304
            ++GP KH KRL+AP++W L +    +  + SPGPH +   LPL++ +R+ LKYA N RE K I+   + L+ G ++  ++H
Sbjct:    3 IKGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKH 83          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 2
Query:   68 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAI--MMQRLVTG*RQGPHRH 304
            ++GP KH KRL+AP++W L +   T+  + SPGPH +   LPL++ +R+ LK A N RE K I  M + L+ G ++  ++H
Sbjct:    3 IKGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKH 83          
The following BLAST results are available for this feature:
BLAST of FC931359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_SULSO8.603e-1531.5030S ribosomal protein S4e OS=Sulfolobus solfataric... [more]
RS4E_THEAC1.454e-1433.8330S ribosomal protein S4e OS=Thermoplasma acidophi... [more]
RS4E_THEVO3.190e-1432.5630S ribosomal protein S4e OS=Thermoplasma volcaniu... [more]
RS4E_METST4.466e-1436.2930S ribosomal protein S4e OS=Methanosphaera stadtm... [more]
RS4E_SULAC5.377e-1432.3330S ribosomal protein S4e OS=Sulfolobus acidocalda... [more]
RS4E_PICTO9.089e-1433.0630S ribosomal protein S4e OS=Picrophilus torridus ... [more]
RS4E_META31.588e-1135.4330S ribosomal protein S4e OS=Methanococcus aeolicu... [more]
RS4E_METMP2.093e-1140.7430S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METM54.622e-1130.1530S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METVS4.663e-1140.7430S ribosomal protein S4e OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionC34104C07EF PostHarvP1 Citrus clementina cDNA clone C34104C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931359 ID=FC931359; Name=FC931359; organism=Citrus clementina; type=EST; length=679bp
CTTCTCGGCTTGAGCATTCTCTTTCGACACTCCGACCACCTAACCTTCAG
TCGACAAATCAGTCAAAATGCGCGGCCCCGGAAAGCACCAGAAGCGCCTC
AGCGCGCCCTCGCACTGGCTCTTGGACAAAATGTCCGGAACCTACGCGCC
CAAGGCCTCCCCCGGTCCCCACAAGCTCCGGGACTGCCTTCCCCTGATTG
TCTTCATCCGTAACCGTCTCAAGTACGCCCTGAACGGTCGCGAGGTCAAG
GCCATCATGATGCAGCGTCTGGTCACAGGTTGACGGCAAGGTCCGCACCG
ACACCACCTACCCCGCTGGATTCATGGACGTCATCTCCCTCGAGAAGACC
GGCGAGCACTTCCGTCTCGTTTACGACACCAAGGGTCGCTTCACCGTCCA
CCGTATTCAGGCTGAGGAGGCTGAGTACAAGCTCTGCAAGGTCAAGCGTG
TTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTACGCACGATGCGCGA
ACCATCCGCTACCCCGACCCTGCCATCAAGGTCAACGACACCGTCAAGGT
TGACATTGCCACTGGCAAGATCCTCGACTTCGTCAAGTTCGACTCCGGTG
TTGTCATCATGGCCACTGGTGGTCGCAACATGGGTCGTGTTGGTGTCATC
ACTCACCGTGAGCGTCACGACGGTGGTTT
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