FC931361

Overview
NameFC931361
Unique NameFC931361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931361_ssr142 microsatellite FC931361_ssr142:142..156. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931361_ssr49 microsatellite FC931361_ssr49:49..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig259 contig Ccv1_Contig259:6..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 1.009e-59
Identity = 111/182 (60.99%), Postives = 147/182 (80.77%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSDSYKAELS 709
            YLFK+V+IGDS VGKSNLLSR+ RNEFN  SK+TIGVEF T+S+++DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  T++++ RWL EL+ H+D+ +  MLVGNK DL  +R V T+E ++ AE  GL F+ETSALDSTNV+ AF+ ++ EI + VS+K + SD  + ++S
Sbjct:   10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM-SDRRENDMS 190          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 1.009e-59
Identity = 111/182 (60.99%), Postives = 147/182 (80.77%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSDSYKAELS 709
            YLFK+V+IGDS VGKSNLLSR+ RNEFN  SK+TIGVEF T+S+++DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  T++++ RWL EL+ H+D+ +  MLVGNK DL  +R V T+E ++ AE  GL F+ETSALDSTNV+ AF+ ++ EI + VS+K + SD  + ++S
Sbjct:   10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM-SDRRENDMS 190          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.009e-59
Identity = 111/182 (60.99%), Postives = 147/182 (80.77%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSDSYKAELS 709
            YLFK+V+IGDS VGKSNLLSR+ RNEFN  SK+TIGVEF T+S+++DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  T++++ RWL EL+ H+D+ +  MLVGNK DL  +R V T+E ++ AE  GL F+ETSALDSTNV+ AF+ ++ EI + VS+K + SD  + ++S
Sbjct:   10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM-SDRRENDMS 190          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 1.009e-59
Identity = 111/182 (60.99%), Postives = 147/182 (80.77%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSDSYKAELS 709
            YLFK+V+IGDS VGKSNLLSR+ RNEFN  SK+TIGVEF T+S+++DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  T++++ RWL EL+ H+D+ +  MLVGNK DL  +R V T+E ++ AE  GL F+ETSALDSTNV+ AF+ ++ EI + VS+K + SD  + ++S
Sbjct:   10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM-SDRRENDMS 190          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.720e-59
Identity = 111/175 (63.43%), Postives = 143/175 (81.71%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSD 688
            Y+FK+V+IGDSAVGKS +L+R+ARNEF+  SKATIGVEFQT+++ I  K VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDIT+R TFD I RWL+EL+ H+D  +  ML+GNK DLE  R V TE+ K  A+ EGLFF+ETSA+++TN+++AF  V+ EI   V++K L +D
Sbjct:   14 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAAD 188          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.247e-59
Identity = 109/182 (59.89%), Postives = 145/182 (79.67%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSDSYKAELS 709
            YLFKIV+IGDS VGKSN+LSR+ RNEF   SK+TIGVEF T++++++GK VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIT+R TFD++ RWL EL+ H+D+ +  M+ GNK DL  +R VS ++G +L+E EGL F+ETSAL++TN++ AF+ ++ EI   VS+K L +    A  S
Sbjct:   11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGAS 192          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.832e-59
Identity = 109/181 (60.22%), Postives = 142/181 (78.45%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSDSYKAEL 706
            YLFK+V+IGDS VGKSNLLSR+ +NEF+  SK+TIGVEF T+S+ +D K +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR +TF+++  WL EL+ H+D  +  MLVGNK DL  +  V TE+ KS AE E L+FMETSAL++TNV+NAF  V+ +I   VS+K + + S  A +
Sbjct:   12 YLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANV 192          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 227.639 bits (579), Expect = 5.005e-59
Identity = 110/182 (60.44%), Postives = 146/182 (80.22%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSDSYKAELS 709
            YLFK+V+IGDS VGKSNLLSR+ RNEFN  SK+TIGVEF T+S+++DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  T++++ RWL EL+ H+D+ +  MLVGNK DL  +R V T+E ++ AE  GL F+ETSALD TNV+ AF+ ++ EI + VS+K + SD  + ++S
Sbjct:   10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEIYRIVSQKQM-SDRRENDMS 190          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.537e-59
Identity = 108/176 (61.36%), Postives = 141/176 (80.11%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSDS 691
            YLFK+V+IGDS VGKSNLLSR+ RNEFN  SK+TIGVEF T+S+++DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  T++++ RWL EL+ H+D  +  MLVGNK DL  +R V T+E ++ AE   L F+ETSALDSTNV+ AF+ ++ EI + VS+K ++  S
Sbjct:   10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQISDRS 185          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 226.483 bits (576), Expect = 1.115e-58
Identity = 107/170 (62.94%), Postives = 139/170 (81.76%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRK 673
            YLFK+V+IGDS VGKSNLLSR+ RNEFN  SK+TIGVEF T+S+++DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  T++++ RWL EL+ H+D+ +  MLVGNK DL  +R V T+E ++ AE   L F+ETSALDSTNV+ AF+ ++ EI + VS+K
Sbjct:   10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 179          
The following BLAST results are available for this feature:
BLAST of FC931361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_MOUSE1.009e-5960.99Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN1.009e-5960.99Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK1.009e-5960.99Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA1.009e-5960.99Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RB11D_TOBAC1.720e-5963.43Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11C_LOTJA2.247e-5959.89Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RAA1C_ARATH3.832e-5960.22Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RB11A_BOVIN5.005e-5960.44Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RB11B_DISOM6.537e-5961.36Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RB11B_RAT1.115e-5862.94Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionC34104C09EF PostHarvP1 Citrus clementina cDNA clone C34104C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931361 ID=FC931361; Name=FC931361; organism=Citrus clementina; type=EST; length=711bp
GATGTCTGTGCCAGCTTGACACCAGTCGCAGCACCACCACCATTATTGTT
ATTTATTTATTTTTTTTATTTTTTTTCCTTTTAGCTTCCAGTTTCCATTC
AAGGGAATTCAATTCAAAACGATGTCGTCGTCGGATGAAGAAGGAGGAGG
AGGAGGGGAGGAGTACTTGTTCAAGATCGTGATAATCGGCGACTCGGCGG
TGGGGAAATCGAACCTACTGTCTCGTTACGCTCGGAACGAGTTCAATCCT
CACTCGAAGGCGACAATTGGAGTCGAGTTTCAAACGCAGAGCATGGAGAT
CGACGGCAAGGAAGTCAAGGCTCAGATTTGGGACACCGCCGGCCAGGAGC
GCTTCCGCGCCGTCACTTCTGCTTACTACAGAGGCGCCGTCGGTGCTCTC
ATTGTTTACGACATTACCAGGCGTACCACTTTTGACAGCATCTCTCGCTG
GCTCGATGAGCTCAAGACTCATTCTGATACCACTGTGGCAAGGATGCTGG
TCGGGAACAAATGTGATTTGGAGAGTATCCGGAATGTGAGCACTGAAGAA
GGCAAAAGCCTTGCAGAAGCAGAAGGGTTGTTTTTCATGGAAACTTCTGC
ATTGGACTCGACGAATGTTAAAAATGCTTTTGAGATTGTCATCCGAGAGA
TTTNACAGCATGTCAGCAGGAAGGTCCTGAATTCAGATAGTTACAAAGCT
GAATTATCTCT
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