FC931361

Overview
NameFC931361
Unique NameFC931361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931361_ssr142 microsatellite FC931361_ssr142:142..156. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931361_ssr49 microsatellite FC931361_ssr49:49..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig259 contig Ccv1_Contig259:6..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.560e-42
Identity = 85/167 (50.90%), Postives = 116/167 (69.46%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHV 664
            Y+FK +IIGD  VGKS LL ++  N+F P S  TIGVEF T+ ++++ K++K QIWDTAGQERFRAVT +YYRGA GAL+VYDITRR T++ ++ WL + +  ++     ML+GNK DLE  R+V+ EE  + A+  GL F+E+SA    NV+ AF    + I Q V
Sbjct:    7 YIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSV 173          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 7.261e-42
Identity = 84/183 (45.90%), Postives = 126/183 (68.85%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRK--VLNSDSYKAEL 706
            +LFK +IIGD+ VGKS LL ++    F P    TIGVEF  + + ID K +K QIWDTAGQE FR++T +YYRG+ GAL+VYDITRR TF+ ++ WL + ++++++ +  +L+GNK D+ES R VS EEG+  A+  GL F+ETSA  ++NV+ AF     +I + + +    +N++S+  +L
Sbjct:    4 FLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQKGDFDINNESFGIKL 186          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 9.484e-42
Identity = 77/163 (47.24%), Postives = 117/163 (71.78%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREI 652
            +LFK+++IGDS VGK+ L+ R+A + FN    +TIG++F+ +++EI+GK +K Q+WDTAGQERF+ +T+AYYRGA+G ++VYDIT   +F++I  W+  +K ++   V R+L+GNKCD+E+ R V  E+ + LA    + F ETSA  S NV  AF  + R+I
Sbjct:    7 HLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDI 169          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.239e-41
Identity = 80/168 (47.62%), Postives = 124/168 (73.81%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVS 667
            YLFK+++IGDS VGKS LL R+A + +     +TIGV+F+ +++E+DGK +K QIWDTAGQERFR +TS+YYRGA G ++VYD+T + +F+++ +WL E+  ++   V ++LVGNK DL + R VST+  K  AE+ G+ F+ETSA ++ NV+ AF ++  +I + ++
Sbjct:    7 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMA 174          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.239e-41
Identity = 82/163 (50.31%), Postives = 121/163 (74.23%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREI 652
            YLFK+++IGDS+VGKS LL R+A + +     +TIGV+F+ +++E DGK +K QIWDTAGQERFR +TS+YYRGA G +IVYD T   +F+++ +WL E+  +++ +V ++L+GNK D+   + VSTE G++LA+  G+ F+ETSA DS NV+ AF  +  EI
Sbjct:    7 YLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEI 169          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.618e-41
Identity = 76/163 (46.63%), Postives = 117/163 (71.78%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREI 652
            +LFK+++IGDS VGK+ L+ R+A + FN    +TIG++F+ ++++I+GK +K Q+WDTAGQERF+ +T+AYYRGA+G ++VYDIT   +F++I  W+  +K ++   V R+L+GNKCD+E+ R V  E+ + LA    + F ETSA  S NV  AF  + R+I
Sbjct:    7 HLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDI 169          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.759e-41
Identity = 80/156 (51.28%), Postives = 117/156 (75.00%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAF 631
            YLFK+++IGDS+VGKS  L R+A + +     +TIGV+F+ +++E++GK VK QIWDTAGQERFR +TS+YYRGA G +IVYDIT   +F+++ +WLDE+  +++ +V ++LVGNKCDL   R V T   ++ A+  G+ F+ETSA +S NV+ AF
Sbjct:    7 YLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAF 162          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.759e-41
Identity = 79/175 (45.14%), Postives = 122/175 (69.71%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSD 688
            Y+FKI+IIG+S+VGK++ L RYA + F P   +T+G++F+ +++  + K +K QIWDTAGQER+R +T+AYYRGA+G +++YDIT   +F+++  W  ++KT+S      +LVGNKCD+E  R VS+E G+ LA+  G  F E SA D+ NVK  FE ++  I + +S  +  +D
Sbjct:   21 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 195          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.759e-41
Identity = 79/175 (45.14%), Postives = 122/175 (69.71%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSD 688
            Y+FKI+IIG+S+VGK++ L RYA + F P   +T+G++F+ +++  + K +K QIWDTAGQER+R +T+AYYRGA+G +++YDIT   +F+++  W  ++KT+S      +LVGNKCD+E  R VS+E G+ LA+  G  F E SA D+ NVK  FE ++  I + +S  +  +D
Sbjct:   21 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 195          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.759e-41
Identity = 79/175 (45.14%), Postives = 122/175 (69.71%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSD 688
            Y+FKI+IIG+S+VGK++ L RYA + F P   +T+G++F+ +++  + K +K QIWDTAGQER+R +T+AYYRGA+G +++YDIT   +F+++  W  ++KT+S      +LVGNKCD+E  R VS+E G+ LA+  G  F E SA D+ NVK  FE ++  I + +S  +  +D
Sbjct:   21 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 195          
The following BLAST results are available for this feature:
BLAST of FC931361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB14_DICDI5.560e-4250.90Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
RAB2A_DICDI7.261e-4245.90Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB13_RAT9.484e-4247.24Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
YPT1_PHYIN1.239e-4147.62Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RABD1_ARATH1.239e-4150.31Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB13_MOUSE1.618e-4146.63Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
YPTM1_MAIZE2.759e-4151.28GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB3A_RAT2.759e-4145.14Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG2.759e-4145.14Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE2.759e-4145.14Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]

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Properties
Property NameValue
Genbank descriptionC34104C09EF PostHarvP1 Citrus clementina cDNA clone C34104C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931361 ID=FC931361; Name=FC931361; organism=Citrus clementina; type=EST; length=711bp
GATGTCTGTGCCAGCTTGACACCAGTCGCAGCACCACCACCATTATTGTT
ATTTATTTATTTTTTTTATTTTTTTTCCTTTTAGCTTCCAGTTTCCATTC
AAGGGAATTCAATTCAAAACGATGTCGTCGTCGGATGAAGAAGGAGGAGG
AGGAGGGGAGGAGTACTTGTTCAAGATCGTGATAATCGGCGACTCGGCGG
TGGGGAAATCGAACCTACTGTCTCGTTACGCTCGGAACGAGTTCAATCCT
CACTCGAAGGCGACAATTGGAGTCGAGTTTCAAACGCAGAGCATGGAGAT
CGACGGCAAGGAAGTCAAGGCTCAGATTTGGGACACCGCCGGCCAGGAGC
GCTTCCGCGCCGTCACTTCTGCTTACTACAGAGGCGCCGTCGGTGCTCTC
ATTGTTTACGACATTACCAGGCGTACCACTTTTGACAGCATCTCTCGCTG
GCTCGATGAGCTCAAGACTCATTCTGATACCACTGTGGCAAGGATGCTGG
TCGGGAACAAATGTGATTTGGAGAGTATCCGGAATGTGAGCACTGAAGAA
GGCAAAAGCCTTGCAGAAGCAGAAGGGTTGTTTTTCATGGAAACTTCTGC
ATTGGACTCGACGAATGTTAAAAATGCTTTTGAGATTGTCATCCGAGAGA
TTTNACAGCATGTCAGCAGGAAGGTCCTGAATTCAGATAGTTACAAAGCT
GAATTATCTCT
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