FC931367

Overview
NameFC931367
Unique NameFC931367
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931367 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.878e-11
Identity = 47/152 (30.92%), Postives = 70/152 (46.05%), Query Frame = 1
Query:    4 LSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQLPLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPLVSGTIPSTGQLATFEKTSYLGDPLLD--LPDFIENGPHHGHKYPNSNGRTG 453
            L    L G L  ++  L     + L  N  +G +P ++  LPL+ + L  N  +G IP EFGNI  L +L L  N  SG  P    NL  + ++ +S N   +G IPST    T  +   + D  L   +PDFI+        +  ++G  G
Sbjct:   70 LKRENLQGSLPKELVGLPLLQEIDLSRNYLNGSIPPEWGVLPLVNIWLLGNRLTGPIPKEFGNITTLTSLVLEANQLSGELPLELGNLPNIQQMILSSNNF-NGEIPSTFAKLTTLRDFRVSDNQLSGTIPDFIQKWTKLERLFIQASGLVG 220          
BLAST of FC931367 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.878e-11
Identity = 57/166 (34.34%), Postives = 81/166 (48.80%), Query Frame = 1
Query:   13 NQLSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQLPLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPLVSGTIPSTGQLATFEKTS--YLGDPLLD--LPDFIENGPHHGHKYPNSNGRTGNNTKLTIILAFLALL 498
            + L G L P I KL     + L +N  +G LP ++    L  ++L  N  SGEIP EFGN   L  LDL  N FSG  P    NL  L KL +S N L +GT+P++  LA  +  +   + D  L   +P +I+N          ++G TG    +  +L+ L  L
Sbjct:  110 HNLPGTL-PQIVKLPYLREIDLAYNYINGTLPREWASSNLTFISLLVNRLSGEIPKEFGN-SSLTYLDLESNAFSGTIPQELGNLVHLKKLLLSSNKL-TGTLPAS--LARLQNMTDFRINDLQLSGTIPSYIQNWKQLERLEMIASGLTGPIPSVISVLSNLVNL 270          
BLAST of FC931367 vs. ExPASy Swiss-Prot
Match: PGIP1_ARATH (Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana GN=PGIP1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    1 QLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQLP-LIVLNLTRNNFSGEIPSEFGNIK-CLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPL 306
            +LS   L+G +   I +L+N   + L FN   G +PS    LP ++ L L+RN  +G IP  FG+    + +L LS+N  SGP P S  N+ + +++++S N L
Sbjct:  125 RLSWTNLTGPIPDFISQLKNLEFLELSFNDLSGSIPSSLSTLPKILALELSRNKLTGSIPESFGSFPGTVPDLRLSHNQLSGPIPKSLGNI-DFNRIDLSRNKL 227          
BLAST of FC931367 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 64/214 (29.91%), Postives = 100/214 (46.73%), Query Frame = 1
Query:    1 QLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQLPLI-VLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPL--------------------VSGTIPSTGQLATFEKTSYLGDPLLDLP--DFIENGPHHGHKYPNSNGRTGNNTKLTIILAFLALLMAC-LICGVLSIIIYMLVKRPAEQQ 570
            +L G  LSG L   IG L     +   FN  +G LP  F  L L+  L L  N FSGEIPS    +  +  ++L+ NNF G  P + N+ T L+ L +  N L                    ++G+IP    L+   KT++LG+ L   P      NG  +G   P   G  G + KL+   A + +++ C ++  VL +I++ L ++  ++Q
Sbjct:   69 RLPGVGLSGPLPIAIGNLTKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIPDNVNSATRLATLYLQDNQLTGPIPEIKIKLQQFNVSSNQLNGSIPD--PLSGMPKTAFLGNLLCGKPLDACPVNGTGNGTVTP---GGKGKSDKLS-AGAIVGIVIGCFVLLLVLFLIVFCLCRKKKKEQ 276          
BLAST of FC931367 vs. ExPASy Swiss-Prot
Match: PGIP2_ARATH (Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   19 LSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQLP-LIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLT-ELSKLNISYNPLVSGTIPST 330
            L+G + P I KL+N + + L +    G +P    QL  L  ++L+ N+ SG IPS   +++ L+ L+LS N  +GP P SF   + ++  L +S+N L SGTIP +
Sbjct:  107 LTGHIQPTIAKLKNLTFLRLSWTNLTGPVPEFLSQLKNLEYIDLSFNDLSGSIPSSLSSLRKLEYLELSRNKLTGPIPESFGTFSGKVPSLFLSHNQL-SGTIPKS 211          
BLAST of FC931367 vs. ExPASy Swiss-Prot
Match: Y5694_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 56/170 (32.94%), Postives = 84/170 (49.41%), Query Frame = 1
Query:    7 SGNQLSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQFDQLPLIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPLVSGTIPSTGQLATFEKTSYL-GDPLLDLPDFIENGPHHGHKYPNSNGRTGNNTKLTIILAFLALLMACLI 513
            S N+ SGEL P+       S+V++  N+  GK+P   +   L+ L+L  N F+GEIP    ++  L  LDLS N+ +G  P    NL +L+  N+S+N L SG +P +  L +    S+L G+P L  P     G  +      SN        L + L  LAL +A  +
Sbjct:  397 SQNRFSGELPPNFCDSPVLSIVNISHNRLLGKIPELKNCKKLVSLSLAGNAFTGEIPPSLADLHVLTYLDLSDNSLTGLIPQGLQNL-KLALFNVSFNGL-SGEVPHS--LVSGLPASFLQGNPELCGP-----GLPNSCSSDRSNFHKKGGKALVLSLICLALAIATFL 557          
BLAST of FC931367 vs. ExPASy Swiss-Prot
Match: Y1719_ARATH (Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 58/194 (29.90%), Postives = 88/194 (45.36%), Query Frame = 1
Query:    1 QLSGNQLSGELSPDIGKLQNFSMVHLGFNQFDGKLPSQF-DQLP-LIVLNLTRNNFSGEIPSEFGNIKCLQNLDLSYNNFSGPFPASFNNLTELSKLNISYNPLVSGTIPSTGQLATFEKTSYLGDPLLDLPDFIENGPHHGHKYPNSNGRTGNNTKLTIILAFLALLMACLICGVLSIIIYMLVKRPAEQQGY 576
            QL   QL+GE+   +   ++   + L  N   G +PSQ    LP L+ L+L+ N   G IP++    K L  L LS N  SG  P+  + L  L +L+++ N L SGTIPS  +LA F      GD      DF  N    G          G N  + I+   L   +  L  G++    + + +   +++GY
Sbjct:   78 QLQSMQLAGEIPESLKLCRSLQSLDLSGNDLSGSIPSQICSWLPYLVTLDLSGNKLGGSIPTQIVECKFLNALILSDNKLSGSIPSQLSRLDRLRRLSLAGNDL-SGTIPS--ELARFG-----GD------DFSGNNGLCGKPLSRCGALNGRNLSIIIVAGVLG-AVGSLCVGLVIFWWFFIREGSRKKKGY 256          
The following BLAST results are available for this feature:
BLAST of FC931367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
Y1534_ARATH1.878e-1130.92Probable LRR receptor-like serine/threonine-protei... [more]
RKF1_ARATH1.878e-1134.34Probable LRR receptor-like serine/threonine-protei... [more]
PGIP1_ARATH2.453e-1135.58Polygalacturonase inhibitor 1 OS=Arabidopsis thali... [more]
Y5659_ARATH3.204e-1129.91Probable inactive receptor kinase At5g16590 OS=Ara... [more]
PGIP2_ARATH5.465e-1136.79Polygalacturonase inhibitor 2 OS=Arabidopsis thali... [more]
Y5694_ARATH9.322e-1132.94Probably inactive leucine-rich repeat receptor-lik... [more]
Y1719_ARATH9.322e-1129.90Probable inactive receptor kinase At1g27190 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC34104D04EF PostHarvP1 Citrus clementina cDNA clone C34104D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931367 ID=FC931367; Name=FC931367; organism=Citrus clementina; type=EST; length=741bp
CAACTTTCTGGGAATCAGCTATCTGGAGAGCTGTCTCCAGATATTGGTAA
GCTGCAAAATTTCAGTATGGTGCATTTGGGTTTCAATCAGTTTGATGGGA
AGCTGCCTTCGCAATTTGATCAGTTGCCCCTTATAGTTCTAAACCTCACT
CGAAACAACTTTTCGGGTGAAATTCCCTCAGAATTTGGGAATATCAAATG
CTTGCAGAATCTTGATTTGTCTTACAACAATTTTTCTGGCCCATTCCCTG
CTAGCTTCAACAATTTGACGGAGCTGAGCAAGTTAAACATCTCATACAAC
CCACTCGTCTCTGGCACAATTCCATCAACTGGGCAGCTAGCAACGTTTGA
GAAAACATCTTACCTTGGAGATCCGCTCCTGGACCTTCCAGATTTCATAG
AGAATGGCCCCCATCATGGACATAAATATCCCAATTCCAATGGAAGGACA
GGGAATAATACTAAGTTGACAATAATTCTAGCTTTTCTAGCTTTACTAAT
GGCCTGCTTGATATGTGGAGTTTTGTCAATTATTATCTATATGCTAGTAA
AACGTCCAGCAGAACAACAGGGATATCTCTTGGAGGGTATGAAGTATCGA
CATGATCTCGCTTCGAGCTCGGGAGGATCGTCACCATGGCTATCAGACAC
TNGTTAGGTCATCCGTTTGGACAAAACAGCATTCACATACTCTGACATTT
TGAAAGGCACGGTNAAATTTTCAGAAGATAGGATAATTGGA
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