FC931370

Overview
NameFC931370
Unique NameFC931370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 39/104 (37.50%), Postives = 56/104 (53.85%), Query Frame = 3
Query:  237 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVV 548
            S SF+RA  AEF AT  +++  + + +           + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GA V+
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGSSLRWAPG-----PLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL 104          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 41/104 (39.42%), Postives = 56/104 (53.85%), Query Frame = 3
Query:  237 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVV 548
            S SF+RA  AEF AT  +++      +G     T    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GA V+
Sbjct:    6 SASFWRAIFAEFFATLFYVFFG----LGASLRWTP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL 104          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 3
Query:  237 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVV 548
            S SF+RA  AEF A+  +++  +   +           + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA+ YMV Q LGA+ GA V+
Sbjct:    6 SASFWRAICAEFFASLFYVFFGLGASLRWAPG-----PLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVL 104          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: AQP2_TALEU (Aquaporin-2 (Fragment) OS=Talpa europaea GN=AQP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 41/104 (39.42%), Postives = 57/104 (54.81%), Query Frame = 3
Query:  237 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVV 548
            S +F RA  AEF+AT +F++  + + +     N + S   +  IA AFG  I  LV     ISG HINPAVT    +   +S  RA FY+  Q LGA+ GA ++
Sbjct:    1 SIAFSRAVFAEFLATLIFVFFGLGSAL-----NWQQSLPSVLQIAMAFGLAIGTLVQALGHISGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 48/151 (31.79%), Postives = 71/151 (47.02%), Query Frame = 3
Query:  237 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 689
            S +F RA +AEF+AT LF++  + + +         S   +  IA AFG  I  LV     +SG HINPAVT    +   +S  RA FY+  Q LGA+ GA ++                  + +  T G  +  E+  T  LV  +F++T
Sbjct:    6 SIAFSRAVLAEFLATLLFVFFGLGSAL-----QWASSPPSVLQIAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEI--TPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFAST 149          
The following BLAST results are available for this feature:
BLAST of FC931370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
MIP_HUMAN6.252e-1137.50Lens fiber major intrinsic protein OS=Homo sapiens... [more]
MIP_CANFA6.252e-1139.42Lens fiber major intrinsic protein OS=Canis famili... [more]
MIP_BOVIN6.252e-1137.50Lens fiber major intrinsic protein OS=Bos taurus G... [more]
AQP2_TALEU6.252e-1139.42Aquaporin-2 (Fragment) OS=Talpa europaea GN=AQP2 P... [more]
AQP2_RAT6.252e-1131.79Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34104D07EF PostHarvP1 Citrus clementina cDNA clone C34104D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931370 ID=FC931370; Name=FC931370; organism=Citrus clementina; type=EST; length=689bp
AGGGACTCCCGTAGCAAGATCAAACAGCTACACGCAGACGACTCAAATCT
TTTTTGTCTTTTAGCTAATTAAGTGAAGAAGAGCGAGCGAAAATGGAGGG
CAAAGAAGAGGGCGTTAGATTAGGAGCCAATAAGTTCACTGAGAGGCAAC
CGATTGGAACGGCAGCTCAGAGCCAAGATGGAAAGGACTACGTTGAGCCG
CCGCCGGCACCACTCTTCGAGGAAGAAGAGCTCACGTCTTGGTCGTTTTA
CAGGGCCGGTATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCT
CCGTATTGACAGTGATGGGCGTCGTCAAGTCCAACACCAAGTGCTCAACC
GTCGGCATTCAAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCGCGCT
CGTTTACTGCACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGA
CATTCGGGCTGTTCTTGGCGAGGAAGCTGTCGTTGACACGTGCACTTTTC
TACATGGTGATGCAGTGTCTGGGAGCCATCTGTGGTGCTGGCGTTGTAAA
GGGTTTCATGGGTGCCGGCCAATACGGTCGGCTCGGCGGCGGTGCCAATG
CTGTAGCCCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATT
GGTACTTTTGTTCTTGTCTACACAGTTTTCTCTGCCACT
back to top