FC931370

Overview
NameFC931370
Unique NameFC931370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 48/151 (31.79%), Postives = 72/151 (47.68%), Query Frame = 3
Query:  237 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 689
            S +F RA +AEF+AT LF++  + + +     N   +   +  IA AFG  I  LV     +SG HINPAVT    +   +S  RA+FY+  Q LGA+ GA ++                  + +  T G  +  E+  T  LV  +F +T
Sbjct:    6 SIAFSRAVLAEFLATLLFVFFGLGSAL-----NWPQALPSVLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALLHEI--TPPAIRGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFPST 149          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 49/146 (33.56%), Postives = 72/146 (49.32%), Query Frame = 3
Query:  252 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFS 683
            +A +AEFI+T +F++    + M   K     +T   G+   A A    +F  V   A ISGGH+NPAVTFG F+   ++L R L Y + Q LG+      V  F+              +  G +  + L  EI+ TF LVYTV++
Sbjct:   21 KAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGS-----TVACFLLRFSTGGLATGTFGLT-GVSVWEALVLEIVMTFGLVYTVYA 160          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.665e-11
Identity = 51/160 (31.87%), Postives = 79/160 (49.38%), Query Frame = 3
Query:  237 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFAL---------VYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 689
            S +  R  ++EFI+TF F    VL  +G V S+ K     + G    FG +I A+         VY +  +SGGH+NPAVTF + +A ++S+  A+FY   Q + ++    V+K  +                 G +  +G+ A     FVLVYTVF+A+
Sbjct:   18 SMNALRCYVSEFISTFFF----VLAAVGSVMSSRKLMAGDVSG---PFGVLIPAIANALALSSSVYISWNVSGGHVNPAVTFAMAVAGRISVPTAMFYWTSQMIASVMACLVLKVTVMEQHVPIYKIAGEMTGFGASVLEGVLA-----FVLVYTVFTAS 165          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.665e-11
Identity = 48/152 (31.58%), Postives = 73/152 (48.03%), Query Frame = 3
Query:  252 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGA------EIIGTFVLVYTVFS 683
            +A +AEFI+  +F++    + M   K      T   G+   + A    +F  V   A ISGGH+NPAVTFG F+   +SL +A+ Y V Q LG++    ++K                     ++   G+GA      EI+ TF LVYTV++
Sbjct:   21 KAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLK-----------IATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYA 161          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: AQP2_PROHA (Aquaporin-2 (Fragment) OS=Procavia capensis habessinica GN=AQP2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.665e-11
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  237 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVV 548
            S +F RA ++EF+AT LF++  + + +     N   +   +  IA AFG  I  LV     ISG HINPAVT    +   +S  RALFY+  Q LGA+ GA ++
Sbjct:    1 SIAFSRAVLSEFLATLLFVFFGLGSAL-----NWPQALPSVLQIAMAFGLAIGTLVQTLGHISGAHINPAVTIACLVGCHVSFLRALFYLAAQLLGAVAGAALL 99          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 45/148 (30.41%), Postives = 70/148 (47.30%), Query Frame = 3
Query:  252 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV----GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFS 683
            RA I+EFIAT +F++ +  +V+ + K     ST+    G+  +A A    +   V     +SGGH+NPAVTFG  +  ++SL RA+ Y   Q LGA+         +              +A G   G  +  E + TF  VY  ++
Sbjct:   28 RAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAAT-----LLLRLATGGARPPGFALASGVGDGHAVLLEAVMTFGFVYAYYA 170          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 49/146 (33.56%), Postives = 70/146 (47.95%), Query Frame = 3
Query:  252 RAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFS 683
            +A  AEFI+T +F++    + M   K       +  G+   A A    +F  V   A ISGGH+NPAVTFG F+   ++L R L Y V Q LG+      V  F+              +  G +  + L  EI+ TF LVYTV++
Sbjct:   21 KAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGS-----TVACFLLRFSTGGQATGTFGLT-GVSVWEALVLEIVMTFGLVYTVYA 160          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 3
Query:  237 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVV 548
            S SF+RA  AEF AT  +++  +   +           + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA+ Y+V Q LGA+ GA V+
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGASLRWAPG-----PLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL 104          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 39/104 (37.50%), Postives = 56/104 (53.85%), Query Frame = 3
Query:  237 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVV 548
            S SF+RA  AEF AT  +++  +   +           + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA+ YM  Q LGA+ GA V+
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGASLRWAPG-----PLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVL 104          
BLAST of FC931370 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 48/151 (31.79%), Postives = 71/151 (47.02%), Query Frame = 3
Query:  237 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 689
            S +F RA +AEF+AT LF++  + + +         S   +  IA AFG  I  LV     +SG HINPAVT    +   +S  RA FY+  Q LGA+ GA ++                  + +  T G  +  E+  T  LV  +F++T
Sbjct:    6 SIAFSRAVLAEFLATLLFVFFGLGSAL-----QWASSPPSVLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEI--TPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFAST 149          
The following BLAST results are available for this feature:
BLAST of FC931370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
AQP2_SHEEP2.149e-1131.79Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]
TIP11_ORYSJ2.806e-1133.56Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP51_ARATH3.665e-1131.88Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
TIP12_ORYSJ3.665e-1131.58Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
AQP2_PROHA3.665e-1139.42Aquaporin-2 (Fragment) OS=Procavia capensis habess... [more]
TIP32_MAIZE4.787e-1130.41Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP11_MAIZE4.787e-1133.56Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
MIP_SHEEP4.787e-1137.50Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_RABIT4.787e-1137.50Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
AQP2_MOUSE4.787e-1131.79Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34104D07EF PostHarvP1 Citrus clementina cDNA clone C34104D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931370 ID=FC931370; Name=FC931370; organism=Citrus clementina; type=EST; length=689bp
AGGGACTCCCGTAGCAAGATCAAACAGCTACACGCAGACGACTCAAATCT
TTTTTGTCTTTTAGCTAATTAAGTGAAGAAGAGCGAGCGAAAATGGAGGG
CAAAGAAGAGGGCGTTAGATTAGGAGCCAATAAGTTCACTGAGAGGCAAC
CGATTGGAACGGCAGCTCAGAGCCAAGATGGAAAGGACTACGTTGAGCCG
CCGCCGGCACCACTCTTCGAGGAAGAAGAGCTCACGTCTTGGTCGTTTTA
CAGGGCCGGTATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCT
CCGTATTGACAGTGATGGGCGTCGTCAAGTCCAACACCAAGTGCTCAACC
GTCGGCATTCAAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCGCGCT
CGTTTACTGCACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGA
CATTCGGGCTGTTCTTGGCGAGGAAGCTGTCGTTGACACGTGCACTTTTC
TACATGGTGATGCAGTGTCTGGGAGCCATCTGTGGTGCTGGCGTTGTAAA
GGGTTTCATGGGTGCCGGCCAATACGGTCGGCTCGGCGGCGGTGCCAATG
CTGTAGCCCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATT
GGTACTTTTGTTCTTGTCTACACAGTTTTCTCTGCCACT
back to top