FC931375

Overview
NameFC931375
Unique NameFC931375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931375_ssr21 microsatellite FC931375_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8184 contig Ccv1_Contig8184:34..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.216e-74
Identity = 129/179 (72.07%), Postives = 146/179 (81.56%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK-VPTPMAEHDRNW 695
            G WQSAHATFYGG DASGTMGGACGYGNLYSQGYG NTAALSTALFN+G +CG+C+EL+C      C PG+  I +TATNFCPPN+  PSD+GGWCNPPRPHFD+A P FL +AQYRAGIVPVS+RRVPC K+GG+RFT+NG  YFNLVLVTNVAGAGD+  VS+K   T      RNW
Sbjct:   22 GGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGS--ITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNW 198          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.216e-74
Identity = 129/179 (72.07%), Postives = 146/179 (81.56%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK-VPTPMAEHDRNW 695
            G WQSAHATFYGG DASGTMGGACGYGNLYSQGYG NTAALSTALFN+G +CG+C+EL+C      C PG+  I +TATNFCPPN+  PSD+GGWCNPPRPHFD+A P FL +AQYRAGIVPVS+RRVPC K+GG+RFT+NG  YFNLVLVTNVAGAGD+  VS+K   T      RNW
Sbjct:   22 GGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGS--ITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNW 198          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.084e-73
Identity = 125/177 (70.62%), Postives = 145/177 (81.92%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK-VPTPMAEHDRNW 695
            W +A ATFYGG+DASGTMGGACGYGNLYSQGYG NTAALSTALFN G SCGACF++KC  DP+WC  G   I +T TNFCPPNFAQ ++ GGWCNPP+ HFDLA P+FL++AQY+AG+VPV YRRV CR++GGIRFTING  YFNLVL+TNVAGAGD++ VS+K   T      RNW
Sbjct:   29 WVNARATFYGGADASGTMGGACGYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWCIGGT--ITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNW 203          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 6.065e-73
Identity = 130/184 (70.65%), Postives = 148/184 (80.43%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC---GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKVPTPMAEH--DRNW 695
            GG W SAHATFYGG DASGTMGGACGYGNLYSQGYG NTAALSTALFNNGLSCGACFE++C   GG    C PG+  +++TATNFCPPN A PSD+GGWCNPPR HFD++ P+F ++A ++AGIVPVSYRRV C+K+GGIRFTING  YFNLVLVTNV GAGD+  V+VK     A     RNW
Sbjct:   61 GGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPGS--VVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNW 242          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.035e-72
Identity = 126/180 (70.00%), Postives = 141/180 (78.33%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKVPTPMA--EHDRNW 695
            G WQ  HATFYGG DASGTMGGACGYGNLY QGYG NTAALSTALFNNGL+CGAC+E+KC  DP+WC      I +TATNFCPPN    +DNGGWCNPP  HFDLA P FL++AQYRAGIVPVS+RRVPC K+GGIRFTING  YFNLVL++NV GAGD+  VS+K     +     RNW
Sbjct:   28 GGWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCL--GSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNW 205          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 3.931e-72
Identity = 123/166 (74.10%), Postives = 142/166 (85.54%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK 659
            G W+  HATFYGG+DASGTMGGACGYGNL+SQGYG+ TAALSTALFN+G  CGACFEL+C  DP+WC PG+  I+++ATNFCPPNFA  +DNGGWCNPP  HFDLA P FL++AQYRAGIVPV++RRVPC K GGIRFTING  YF+LVL+TNV GAGDI  VS+K
Sbjct:   30 GGWERGHATFYGGADASGTMGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPGS--IIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLK 193          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.683e-71
Identity = 119/167 (71.26%), Postives = 139/167 (83.23%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQW-CNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK 659
            G WQ  HATFYGG DASGTMGGACGYGNLYSQGYG +TAALSTALFN GLSCG+C+EL+C GD +  C PG   + +TATNFCPPN+A PSD GGWCNPPR HFDLA P FL++A++ AGIVPVS+RRV C ++GG+RFT+NG  YFNLVLVTNV GAGD+  ++VK
Sbjct:   26 GQWQPGHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVK 192          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.672e-68
Identity = 120/176 (68.18%), Postives = 140/176 (79.55%), Query Frame = 3
Query:  138 KIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK 659
            KI  V AG  W  AHATFYGGSDASGTMGGACGYGNLY+ GY  NTAALSTALFN+G SCG C+++ C     PQWC  G  +I ITATNFCPPNFAQ SDNGGWCNPPRPHFD+A P FL +A+Y+AGIVP+ Y++V CR+ GG+RFTING  YF LVL++NVAG G+I +V +K
Sbjct:   20 KISSVSAG--WLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGK-SITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIK 192          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 8.482e-67
Identity = 123/172 (71.51%), Postives = 134/172 (77.91%), Query Frame = 3
Query:  150 VFAGGP--WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK 659
            V AGG   W S  ATFYGGSDASGTMGGACGYGNLYS GYG +TAALSTALFNNG SCGACFE++CGG    C  G  A+  TATN CPPN+A   D GGWCNPPRPHFD+A P F ++AQ RAG+VPV YRRV C K+GGIRFTI G  YFNLVLVTNV GAGD+  VSVK
Sbjct:   19 VAAGGDSGWSSGSATFYGGSDASGTMGGACGYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGS-CLAGTVAV--TATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVK 187          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.447e-66
Identity = 123/189 (65.08%), Postives = 138/189 (73.02%), Query Frame = 3
Query:  150 VFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKVPT-----PMAEHDRNW 695
            V A   WQ AHATFYGG+DASGTMGGACGYGNLYSQGYG   AALSTALFN+G SCG C+++ C     PQWC PG   + ITATNFCPPN+  PSDNGGWCNPPRPHFD+A P + K+  Y AGI+PV Y+RVPC K+GG+RFTING  YF LVLVTNVA AG I  + V         PMA   RNW
Sbjct:   33 VAAPTQWQKAHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPG-VTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMA---RNW 217          
The following BLAST results are available for this feature:
BLAST of FC931375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
EXPA4_ORYSJ3.216e-7472.07Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI3.216e-7472.07Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXP14_ARATH2.084e-7370.62Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA5_ORYSJ6.065e-7370.65Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA8_ARATH1.035e-7270.00Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA2_ARATH3.931e-7274.10Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA6_ORYSJ9.683e-7171.26Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP17_ARATH7.672e-6868.18Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP11_ORYSJ8.482e-6771.51Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ORYSJ1.447e-6665.08Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC34104D12EF PostHarvP1 Citrus clementina cDNA clone C34104D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931375 ID=FC931375; Name=FC931375; organism=Citrus clementina; type=EST; length=715bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCACTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACAAA
CTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGCA
ACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCTC
GCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCTG
CAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTCA
ACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGTG
AGCGTGAAGGTGCCAACACCCATGGCTGAGCATGACCGCAACTGGGACAA
ACTGGCATCCACGCT
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