FC931375

Overview
NameFC931375
Unique NameFC931375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931375_ssr21 microsatellite FC931375_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8184 contig Ccv1_Contig8184:34..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 8.216e-62
Identity = 111/183 (60.66%), Postives = 134/183 (73.22%), Query Frame = 3
Query:  156 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK-VPTPMAEHDRNW 695
            A G W S  ATFYGG DASGTMGGACGYGNLY+QGYGV  AALSTALFN G SCG C+ + C     P+WC  G  A+ ITATN CPPN+A  +D+GGWCNPPRPHFD++ P +  +  YRAGIVPV Y++V C ++GG+RFT++GF YF LVL+TNVAG+G +  +SVK   T      RNW
Sbjct:   23 AAGGWVSGTATFYGGKDASGTMGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGT-AVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKGSKTGWIPLARNW 204          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.390e-61
Identity = 113/184 (61.41%), Postives = 131/184 (71.20%), Query Frame = 3
Query:  153 FAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK-VPTPMAEHDRNW 695
            F    W  A ATFYGGSDASGTMGGACGYG+LYS GYG NTAALST LFN+G SCG C+ + C    D ++C  G  ++ ITATN CPPN+A P+D GGWCNPPR HFD+A P +LK+  Y  GIVPV Y+RVPC K+GG+RFTING  YF LVLV+NV G G I  VS+K   T      RNW
Sbjct:   29 FTASGWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGT-SVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNW 211          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 3.122e-61
Identity = 109/179 (60.89%), Postives = 135/179 (75.42%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK-VPTPMAEHDRNW 695
            W    ATFYGG+DASGTMGGACGYGNLY+ GYG NTAALS+ LFN+G SCG C+ + C     PQWC  G  A+ ITATN CPPN+A PS++GGWCNPPRPHFD+A P +L++  Y+AGI+PV Y++V C ++GGIRFT+ GF +F LVLV+NVAG+G +  VSVK   T     +RNW
Sbjct:   27 WNKGTATFYGGADASGTMGGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAG-AAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKGGSTGWITLNRNW 204          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 4.078e-61
Identity = 111/193 (57.51%), Postives = 135/193 (69.95%), Query Frame = 3
Query:  135 AKIPGVFAGGP---WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK-VPTPMAEHDRNW 695
            A +    AGG    W  A ATFYGGSD SGTMGGACGYGNLY QGYGV+ AALS ALFN+G SCG C+ + C     PQWC  G  A+ +TATN CPPN+A PSD GGWCNPPRPHFD++ P + ++  Y+AGIVPV Y+RV C ++GG+RFT+ G  YF LVL+TNVAG+G +    +K   T   +  RNW
Sbjct:   14 AVVAACAAGGAVADWSPATATFYGGSDGSGTMGGACGYGNLYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGT-AVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQMSRNW 205          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 9.084e-61
Identity = 109/183 (59.56%), Postives = 132/183 (72.13%), Query Frame = 3
Query:  156 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDP--QWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK-VPTPMAEHDRNW 695
            A   W  A ATFYGG+D SGTMGGACGYGNLY QGYG+  AALSTALFN+G +CG C+ + C  D   +WC P   A+ +TATN CPPN+A PSD GGWCNPPR HFD++ P + ++  YRAGIVPV YRRV C +RGG+RFT+ GF +F LVLV NVAG+G +  VSV+   T   +  RNW
Sbjct:   23 AADDWIPATATFYGGNDGSGTMGGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRG-AVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNW 204          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 2.643e-60
Identity = 106/177 (59.89%), Postives = 132/177 (74.58%), Query Frame = 3
Query:  171 QSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG-GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK-VPTPMAEHDRNW 695
            QSA ATFYGG D SGTMGGACGYGNLY+ GYG+  AALS+ALFN+G  CGAC+ + C     +WC PG  +I ITATN CPPN+A PS++GGWCNPPR HFD++ P +  +A Y+AGIVPV+Y+RVPC++ GGIRF I+G  YF LV VTNV G+G + ++S+K   T      RNW
Sbjct:   29 QSAFATFYGGKDGSGTMGGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNW 205          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.508e-60
Identity = 105/169 (62.13%), Postives = 125/169 (73.96%), Query Frame = 3
Query:  153 FAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK 659
            +AG PW++A ATFYG    S TMGGACGYGN+Y  GYGV T ALSTALFN G +CG CF+LKC   P  C  G+PA ++TATN CPPN+ Q S+NGGWCNPPR HFDL  P F+K+A ++AGI+PVSYRRV C+K GGIRF   G  Y+ LV V NV G GDI  ++VK
Sbjct:   26 YAGTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVK 193          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.690e-60
Identity = 107/178 (60.11%), Postives = 131/178 (73.60%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG-GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK-VPTPMAEHDRNW 695
            W  A ATFYGGSD +GTMGGACGYGNLY+ GYG+N AALS+ALFN+G  CGAC+ + C      WC PG  +I ITATN CPPN+A+ SD GGWCNPPR HFD++ P +  +A Y+AGIVPV+++RVPC+K GGIRFTI+G  YF LV V NV G+G + +VS+K   T      RNW
Sbjct:   23 WTPATATFYGGSDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGT-SITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNW 199          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.713e-59
Identity = 104/176 (59.09%), Postives = 132/176 (75.00%), Query Frame = 3
Query:  174 SAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG-GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK-VPTPMAEHDRNW 695
            S  ATFYGGSDASGTMGGACGYGNLYS GYG NTAALS+ALFN+G +CG C+++ C   + +WC  G  ++ ITATN CPP++++PS++GGWCNPPR HFD+A P + ++  YR GIVPV+++RV C ++GG+RFTING  YF LVL+TNV G G I  V +K   T      RNW
Sbjct:   26 SGTATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGT-SVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKGTKTGWVTMSRNW 200          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.237e-59
Identity = 109/177 (61.58%), Postives = 129/177 (72.88%), Query Frame = 3
Query:  174 SAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK-VPTPMAEHDRNW 695
            + HATFYGGSDASGTMGGACGYG+LYS GYG  TAALSTALFN+G SCG C+ + C    D +WC  G  +++ITATNFCPPNFA P++NGGWCNPP  HFD+A P + K+  YR GIVPV ++RV C K+GG+RF ING  YF LV + NV GAG I  VS+K   T      RNW
Sbjct:   28 NGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKG-ASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNW 203          
The following BLAST results are available for this feature:
BLAST of FC931375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
EXP28_ORYSJ8.216e-6260.66Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA1_ORYSJ2.390e-6161.41Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP25_ORYSJ3.122e-6160.89Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP31_ORYSJ4.078e-6157.51Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ9.084e-6159.56Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXPA3_ORYSJ2.643e-6059.89Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP18_ARATH4.508e-6062.13Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP33_ORYSJ7.690e-6060.11Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ORYSJ1.713e-5959.09Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH2.237e-5961.58Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34104D12EF PostHarvP1 Citrus clementina cDNA clone C34104D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931375 ID=FC931375; Name=FC931375; organism=Citrus clementina; type=EST; length=715bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCACTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACAAA
CTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGCA
ACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCTC
GCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCTG
CAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTCA
ACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGTG
AGCGTGAAGGTGCCAACACCCATGGCTGAGCATGACCGCAACTGGGACAA
ACTGGCATCCACGCT
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