FC931375

Overview
NameFC931375
Unique NameFC931375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931375_ssr21 microsatellite FC931375_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8184 contig Ccv1_Contig8184:34..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.454e-50
Identity = 95/166 (57.23%), Postives = 114/166 (68.67%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGT-MGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK 659
            W    ATFYG     G   GGACGY  N     Y   TAALST LF +G  CG C+EL+C   P WCNPG+P+++IT TN CPPN+  P+D+GGWCNPPR HFD+A P FLKLAQ  AGIVPV YRRVPC++ GG+RF + G  Y+ L+ V NV GAGD+  +SVK
Sbjct:   52 WHDGSATFYGDPSGMGDDFGGACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVK 216          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.741e-49
Identity = 98/183 (53.55%), Postives = 119/183 (65.03%), Query Frame = 3
Query:  156 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKVP-TPMAEHDRNW 695
            A   W    ATFYGG+D SGTMGGACGYGNLY Q YG+N AALST LFN+G SCG C+ + C  G  P WC  G  AI +T TN+           GGWCN  RP+FD++ P +  +  Y AGIVP+ Y++V C + GG+RF INGF YF LVLVTN+AG+G IV +SVK   T   +  RNW
Sbjct:   19 ARSDWLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGK-AITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNW 189          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 9.750e-47
Identity = 89/177 (50.28%), Postives = 114/177 (64.41%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK-VPTPMAEHDRNW 695
            W+ A AT+Y  ++    +GGACGYG+L   GYG+ T  LS  LF  G  CGACFEL+C  D +WC PG  +I++TATNFC PN+    D GG CNPP  HF L +  F K+A ++AG +PV YRR+ CRK G +RFT++G   F  VL+TNVAG+GDI  V +K   T      RNW
Sbjct:   40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGT-SIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNW 215          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.408e-45
Identity = 87/187 (46.52%), Postives = 122/187 (65.24%), Query Frame = 3
Query:  147 GVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK-VPTPMAEHDRNWDKL 704
            G  A   W+SA A++Y  +D    +GGACG+G+L   GYG+ T  LSTALF  G +CG C+E+KC  D ++C PG  +I++TATNFC PNF  P+D GG CNPP  HF L +  F K+A ++AG++P+ YRRV C + GG+RF + G  +F  VL++NV GAGD+  V +K   +      RNW ++
Sbjct:   26 GSSALSEWRSAKASYYA-ADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGT-SIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQI 210          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.350e-45
Identity = 84/167 (50.30%), Postives = 116/167 (69.46%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQY-RAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK 659
            W  AHAT+YG +D+  ++GGACGY N Y  G+G +TAALS  LF +G SCG C++++C    DP+WC  G  A+ +TATNFCP N     +N GWCN PR HFD++ P F ++A+    GIVPV YRRV C++RGG+RFT+ G   FN+V+++NV G G +  V+V+
Sbjct:   27 WIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRG-AAVTVTATNFCPTN-----NNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVR 187          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 3.834e-43
Identity = 87/165 (52.73%), Postives = 108/165 (65.45%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGT-MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK 659
            W  A A +YG     GT + GACGYG+L   GYG+ TAALSTALFN+G SCGAC+E+ C  +PQ C  G+  I ITAT+ CPP  A       WC  P  HFDL++PMF+K+AQ +A +VPV YRRVPC K GG++F + G      +L  NV GAGDI+ VS K
Sbjct:   45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGS--IKITATDLCPPGSA-------WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAK 200          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.748e-41
Identity = 83/182 (45.60%), Postives = 116/182 (63.74%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKVPT----PMAEHDRNW 695
            W+ A AT     D S ++  GGACGYG+L    +   +A LS  LFN G SCGAC E++C    +WC  G+P++++TAT+FCPPN    SD GGWCN P+ H +L+   F  +A+ RA ++P+ YRRV C +RGG+RF+++G  +F  VL++NV   G++V V VK  T    PMA   RNW
Sbjct:   28 WKIATATLSRDRDGSSSVATGGACGYGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMA---RNW 206          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.508e-39
Identity = 97/203 (47.78%), Postives = 125/203 (61.58%), Query Frame = 3
Query:  135 AKIPGVFAG----GPWQSAHATFYGGSDASGTM-GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKVP-----TPMAEHDRNWDKLAST 713
            AK+P V  G    GPW   HATFYGG DASGT  GGACGY +  + GYG  TAA+S ALF+NG  CGAC+ELK  GD          +++TATN  PP       NG        HFDL MP FL +A+ + G+VPVSYR+V C ++GGI++TI G   +N+V+V NV GAGD+V+++VK       TP+    R+W +L  T
Sbjct:   67 AKMPHVNHGRYKCGPWVDGHATFYGGRDASGTTEGGACGYKD--ADGYGAMTAAVSPALFDNGAGCGACYELK--GD------SGKTVVVTATNQAPPPV-----NG----MKGEHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPL---QRSWGQLWKT 247          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.667e-38
Identity = 76/159 (47.80%), Postives = 101/159 (63.52%), Query Frame = 3
Query:  222 GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK-VPTPMAEHDRNW 695
            GGACGYG+L    YG  TA +S ALF  G +CG C+E++C     WC  G+P +++TAT+FC PN     D GGWCN P+ HF+++   FL++A+ +A IVPV +RRV C + GG+RFTI G   F  VL+TNVA  G++  V VK   T      RNW
Sbjct:   52 GGACGYGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNW 210          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.123e-18
Identity = 60/174 (34.48%), Postives = 90/174 (51.72%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG---GIRFTINGFRYFNLVLVTNVAGAGDIVRVSV 656
            W    AT+YG ++ SGT GGACGY G++    +    AA S +++ +G  CG+C+++KC G+P  C+ G P + +  T+ CP         GG C     HFDL+   F  +A+         AG +PV Y RVPC+ +G     R      +Y+  VLV +  G GD+  V +
Sbjct:   38 WSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CS-GKP-VTVVLTDLCP---------GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDL 199          
The following BLAST results are available for this feature:
BLAST of FC931375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
EXP17_ORYSJ1.454e-5057.23Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ2.741e-4953.55Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH9.750e-4750.28Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP10_ORYSJ1.408e-4546.52Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH5.350e-4550.30Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP21_ARATH3.834e-4352.73Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP20_ARATH2.748e-4145.60Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP26_ORYSJ1.508e-3947.78Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ORYSJ1.667e-3847.80Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB14_ORYSJ1.123e-1834.48Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionC34104D12EF PostHarvP1 Citrus clementina cDNA clone C34104D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931375 ID=FC931375; Name=FC931375; organism=Citrus clementina; type=EST; length=715bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCACTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACAAA
CTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGCA
ACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCTC
GCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCTG
CAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTCA
ACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGTG
AGCGTGAAGGTGCCAACACCCATGGCTGAGCATGACCGCAACTGGGACAA
ACTGGCATCCACGCT
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