FC931375

Overview
NameFC931375
Unique NameFC931375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931375_ssr21 microsatellite FC931375_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8184 contig Ccv1_Contig8184:34..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.269e-18
Identity = 58/176 (32.95%), Postives = 87/176 (49.43%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFR--YFNLVLVTNVAGAGDIVRVSV 656
            G  W S  AT+YGG    G+ GGACGY +   Q  +    AA   +LF NG  CG+C+++KC G+ + C+ G P + +  T+ CP         GG C     HFD++   F  +A          AG++ + Y+RVPCR    + F ++     Y+  +LV    G GD+  V +
Sbjct:   42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACS-GRP-VTVVITDSCP---------GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHI 205          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.793e-16
Identity = 61/176 (34.66%), Postives = 93/176 (52.84%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA------QYR-AGIVPVSYRRVPCRKRGGIRFTI-----NGFRYFNLVLVTNVAGAGDIVRVSV 656
            W +  AT+YG ++ +G+ GGACGY G ++   +    AA S +++ +GL CG+C+++KC G+   C+ GNP + +  T+ CP         GG C     HFDL+   F  +A      Q R AG++ + Y RVPC   GG++ T      +   YF  VLV    G GD+  V +
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSA-CS-GNP-VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVKLTFVVDVGSNPNYF-AVLVKYENGDGDLSGVEL 198          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.518e-15
Identity = 71/204 (34.80%), Postives = 96/204 (47.06%), Query Frame = 3
Query:  144 PGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTI----NGFRYFNLVLVTNVAGAGDIVRVSVKVP----TPMAEHDRNWDKL 704
            P V     W +A AT+YG  +  G+ GGACGY     Q  +    AA S +L+  G  CGAC+E+KC  +   C+ G PA ++  T+ CP         GG C     HFD++      +A+         AGI+ V YRRVPC+  G  I F +    N F YF  VL+    G GD+  V +       TPM +   NW  L
Sbjct:   56 PSVTVTTGWAAAGATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAA-CS-GQPATVV-ITDECP---------GGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPF-YFE-VLIEFEDGDGDLNAVDLMEAGCGWTPMVQ---NWGAL 242          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.983e-15
Identity = 60/171 (35.09%), Postives = 88/171 (51.46%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQG-YGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA------QYR-AGIVPVSYRRVPCRKRGGIRFTI-----NGFRYFNLVLVTNVAGAGDI 641
            W +  AT+YG ++ +G+ GGACGY     Q  +    AA S +++ +GL CG+C+++KC G+   C+ GNP + +  T+ CP         GG C     HFDL+   F  +A      Q R AG++ + Y RVPC   GG+  T      +   YF  VLV    G GD+
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSA-CS-GNP-VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVMLTFAVDAGSNPSYF-AVLVKYENGDGDL 193          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXB17_ORYSJ (Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.382e-15
Identity = 59/175 (33.71%), Postives = 86/175 (49.14%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRA-------GIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDIVRVSVK 659
            W+ A AT+YG ++  G+ GGACGYG+L           ++S  LF +G  CGAC+++KC  D   C+    A+ +  T+ CP         GG C   R HFDL+   F ++A   A       G + V YRR  C+  G  I F +N     ++  +LV    G GDI  + +K
Sbjct:   48 WRPATATWYGDAEGDGSTGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKC-LDHGICS--RRAVTVIVTDECP---------GGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRRTACKYGGKNIAFRVNEGSTNFWLSLLVEFEDGQGDIGSMQIK 210          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.382e-15
Identity = 60/175 (34.29%), Postives = 82/175 (46.86%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA-------QYRAGIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDIVRVSVK 659
            W  A AT+YG +D  G+ GGACGYG L           A+S  LF  G  CGAC++++C  D   C+    A+ +  T+ CP         GG C   R HFDL+   F +LA           G + V YRR  C+  G  I F +N     ++  +LV    G GDI  + +K
Sbjct:   45 WHPATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRC-LDASICS--RRAVTVIVTDECP---------GGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNEGSTTFWLSLLVEFEDGDGDIGSMQLK 207          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.769e-15
Identity = 57/175 (32.57%), Postives = 85/175 (48.57%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA-------QYRAGIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDIVRVSVK 659
            W  A AT+YG  +  G+ GGACGYG L   +       A++  LF NG  CGAC++++C  D   C+    A+ +  T+ CP            C+    HFDL+  +F +LA           G++PV YRR  C+ RG  I F +N     ++  +LV    G GDI  + ++
Sbjct:   36 WLPAVATWYGSPNGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRC-LDKSICS--RRAVTVIITDECP-----------GCSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIR 196          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 53/178 (29.78%), Postives = 87/178 (48.88%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTI--NGFRYFNLVLVTNVAGAGDIVRVSV 656
            GG W +A AT+YG  + +G    GGACG+ N+    +   T+  +  LF +G  CG+C++++C G P  C+     ++IT  N+ P +                HFDL+   F  +A+         AGI+ + +RRVPC+  G  + F +       +  +LV    G GD+V+V +
Sbjct:   89 GGGWLNARATWYGAPNGAGPDDNGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPA-CSGLPETVIITDMNYYPVSLY--------------HFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPGLTVTFHVEQGSNPVYMAILVEYENGDGDVVQVDL 251          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB2_ORYSJ (Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 56/195 (28.72%), Postives = 84/195 (43.08%), Query Frame = 3
Query:  147 GVFAGGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG---GIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKVPTPMAEHDRNW 695
            GV     W  A AT+YG  + +G    GGACG+ N     +   T+  +  LF +G  CGAC++++C  +P  C+     ++IT  N+ P                R HFDL+   F  +A+         AGI+ + +RRVPC  RG              +  VLV      G +V++ V    P  +  R W
Sbjct:   24 GVVYTNDWLPAKATWYGQPNGAGPDDNGGACGFKNTNQYPFMSMTSCGNEPLFQDGKGCGACYQIRCTNNPS-CSGQPRTVIITDMNYYP--------------VARYHFDLSGTAFGAMARPGLNDQLRHAGIIDIQFRRVPCYHRGLYVNFHVEAGSNPVYLAVLVEFANKDGTVVQLDVMESLPSGKPTRVW 203          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB1_ARATH (Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 55/175 (31.43%), Postives = 84/175 (48.00%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA-------QYRAGIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDIVRVSVK 659
            W  A AT+YG ++  G+ GGACGYG+L   + +     A+S  LF  G  CGAC++++C  D   C+    A+ I AT+  P        +G        HFDL+   F  +A           G++ + YRR  C+ RG  I F +N     Y+  +L+    G GDI  + ++
Sbjct:   40 WLPATATWYGSAEGDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRC-LDKTICS--KRAVTIIATDQSP--------SGPSAKAKHTHFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIR 203          
The following BLAST results are available for this feature:
BLAST of FC931375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
EXPB5_ORYSJ4.269e-1832.95Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB15_ORYSJ1.793e-1634.66Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB11_ORYSJ1.518e-1534.80Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB18_ORYSJ1.983e-1535.09Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB17_ORYSJ3.382e-1533.71Expansin-B17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB16_ORYSJ3.382e-1534.29Expansin-B16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB3_ARATH5.769e-1532.57Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 ... [more]
EXPB7_ORYSJ1.285e-1429.78Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB2_ORYSJ1.088e-1328.72Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB1_ARATH3.166e-1331.43Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC34104D12EF PostHarvP1 Citrus clementina cDNA clone C34104D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931375 ID=FC931375; Name=FC931375; organism=Citrus clementina; type=EST; length=715bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCACTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACAAA
CTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGCA
ACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCTC
GCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCTG
CAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTCA
ACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGTG
AGCGTGAAGGTGCCAACACCCATGGCTGAGCATGACCGCAACTGGGACAA
ACTGGCATCCACGCT
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