FC931375
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13 Identity = 61/180 (33.89%), Postives = 84/180 (46.67%), Query Frame = 3 Query: 159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAIL-ITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTIN---GFRYFNLVLVTNVAGAGDIVRVSVK 659 G W A AT+YG +G GG CGY ++ + A + +F +GL CG+CFE+KC P C+ G P ++ IT N+ P HFDLA F +A+ +AGI+ + +RRV C+ + F + G Y L LV V G GDIV V VK Sbjct: 47 GKDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC-DKPVECS-GKPVVVHITDMNYEP--------------IAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSKVTFHLEKGCGPNYLAL-LVKYVDGDGDIVAVDVK 209
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB4_ORYSJ (Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXPB4 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13 Identity = 56/178 (31.46%), Postives = 87/178 (48.88%), Query Frame = 3 Query: 162 GPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTINGFR---YFNLVLVTNVAGAGDIVRVSV 656 GPW A AT+YG + +G GGACG+ + + T+ + LF +G CG+C++++C D Q C+ + ++IT N+ P P HFDL+ F +LA+ +GI+ + + RVPC G I F + + YF VLV G GD+V+V + Sbjct: 53 GPWTKARATWYGQPNGAGPDDNGGACGFKHTNQYPFMSMTSCGNQPLFKDGKGCGSCYKIRCTKD-QSCSGRSETVIITDMNYYP---VAPF-----------HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYF-AVLVEYEDGDGDVVQVDL 214
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXB11_MAIZE (Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13 Identity = 56/178 (31.46%), Postives = 80/178 (44.94%), Query Frame = 3 Query: 159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN--LVLVTNVAGAGDIVRVSVK 659 G W A AT+YG +G GG CGY ++ + A + +F +GL CG+CFE+KC P C+ + IT N+ P HFDLA F +A+ +AGI+ + +RRV C+ + F + N +LV V G GDIV V +K Sbjct: 46 GSDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC-DKPAECSGKPVVVYITDMNYEP--------------IAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSKVTFHLEKGCNPNYLALLVKYVDGDGDIVAVDIK 208
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB9_MAIZE (Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13 Identity = 59/181 (32.60%), Postives = 86/181 (47.51%), Query Frame = 3 Query: 162 GPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNP-AILITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVK 659 G W +A AT+YG + +G GGACG N+ Y TA + +F +G CG+C+E++C P+ C+ GNP + IT N+ P P HFDL+ F LA+ GI+ V +RRV C+ G + + + N VLV VA GDIV + ++ Sbjct: 41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CS-GNPVTVFITDMNY---------------EPIAPYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYVAVLVKFVADDGDIVLMEIQ 204
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB1_MAIZE (Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13 Identity = 59/181 (32.60%), Postives = 86/181 (47.51%), Query Frame = 3 Query: 162 GPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNP-AILITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVK 659 G W +A AT+YG + +G GGACG N+ Y TA + +F +G CG+C+E++C P+ C+ GNP + IT N+ P P HFDL+ F LA+ GI+ V +RRV C+ G + + + N VLV VA GDIV + ++ Sbjct: 41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CS-GNPVTVYITDMNY---------------EPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQ 204
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB6_ORYSJ (Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13 Identity = 52/178 (29.21%), Postives = 82/178 (46.07%), Query Frame = 3 Query: 159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTI--NGFRYFNLVLVTNVAGAGDIVRVSV 656 G W A AT+YG +G GGACG+ N+ + T+ + +F +G CG+C++++C DP C+ ++IT N+ P R HFDL+ F +A+ +GI+ + +RRVPC G I F + + VLV GD+V+V + Sbjct: 41 GSGWLPARATWYGAPTGAGPDDNGGACGFKNVNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCNKDPS-CSGNIETVIITDMNYYP--------------VARYHFDLSGTAFGAMAKPGLNDKLRHSGIIDIQFRRVPCNYPGLKINFHVEEGSNPVYFAVLVEYEDLDGDVVQVDL 203
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB4_ARATH (Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13 Identity = 58/174 (33.33%), Postives = 83/174 (47.70%), Query Frame = 3 Query: 174 SAHATFYGGSDASGTMGGACGYGNLYSQG--YGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDL---AMPMFLKLAQ----YRAGIVPVSYRRVPCRKRGG---IRFTINGFRYFNLVLVTNVAGAGDIVRVSVK 659 +A T+YG +G+ GGACGYG+ + Y + +A +LFNNG CG C+++ C G P C+ G+P I +T T+ CP GG C H DL AM K Q AG++ V+Y+R C RG R Y+ +V G GD+ V ++ Sbjct: 35 TAGVTWYGEPFGAGSTGGACGYGSAVANPPLYAMVSAG-GPSLFNNGKGCGTCYQVVCIGHPA-CS-GSP-ITVTITDECP---------GGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEIQ 195
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB9_ORYSJ (Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXPB9 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12 Identity = 53/178 (29.78%), Postives = 83/178 (46.63%), Query Frame = 3 Query: 165 PWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA-------QYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVK 659 PW A AT+YG SG+ GGACG N+ Y + + +F +G CG+C+E+KC P C+ + IT N+ P + HFD + F +A +AGI+ + +RRV C+ GG + T + + N VLV VA GD++++ ++ Sbjct: 42 PWLPARATWYGQPYGSGSTDNGGACGIKNVNLPPYNGMISCGNVPIFKDGRGCGSCYEVKC-EQPAACSKQPVTVFITDMNYEPIS--------------AYHFDFSGKAFGAMACPGKETELRKAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKFVADDGDVIQMDLQ 204
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB3_ORYSJ (Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12 Identity = 54/189 (28.57%), Postives = 87/189 (46.03%), Query Frame = 3 Query: 168 WQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVKVP-----TPMAE 680 W+ A AT+YG +G GGACG+ N + T+ + +F +G CG+C++++C P C+ ++IT N+ P + + HFDL+ F +A+ AGI+ + ++RVPC G++ T + N VLV G GD+V+V + TPM E Sbjct: 42 WEVARATWYGAPTGAGPDDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCVNHPA-CSGNPETVIITDMNYYPVS--------------KYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRVPC-NFPGLKVTFHVEEGSNPVYFAVLVEYEDGDGDVVQVDLMEANSQSWTPMRE 214
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB1_ORYSJ (Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXPB1a PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12 Identity = 56/181 (30.94%), Postives = 84/181 (46.41%), Query Frame = 3 Query: 159 GGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGY-GVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVK 659 G W A AT+YG +G GGACGY ++ + G+N+ + +F +G CG+CFE+KC P+ C+ I +T N P HFDL+ F +A+ +AGI+ +RRV C+ + T + + N +LV VAG GD+V V +K Sbjct: 38 GDKWLEAKATWYGAPKGAGPKDNGGACGYKDVDKAPFLGMNSCG-NDPIFKDGKGCGSCFEIKC-SKPEACSDKPALIHVTDMNDEP--------------IAAYHFDLSGLAFGAMAKDGKDEELRKAGIIDTQFRRVKCKYPADTKITFHIEKASNPNYLALLVKYVAGDGDVVEVEIK 202 The following BLAST results are available for this feature:
BLAST of FC931375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 89
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931375 ID=FC931375; Name=FC931375; organism=Citrus clementina; type=EST; length=715bpback to top |