FC931375

Overview
NameFC931375
Unique NameFC931375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931375_ssr21 microsatellite FC931375_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8184 contig Ccv1_Contig8184:34..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 61/180 (33.89%), Postives = 84/180 (46.67%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAIL-ITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTIN---GFRYFNLVLVTNVAGAGDIVRVSVK 659
            G  W  A AT+YG    +G    GG CGY ++    +    A  +  +F +GL CG+CFE+KC   P  C+ G P ++ IT  N+ P                  HFDLA   F  +A+        +AGI+ + +RRV C+    + F +    G  Y  L LV  V G GDIV V VK
Sbjct:   47 GKDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC-DKPVECS-GKPVVVHITDMNYEP--------------IAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSKVTFHLEKGCGPNYLAL-LVKYVDGDGDIVAVDVK 209          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB4_ORYSJ (Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 56/178 (31.46%), Postives = 87/178 (48.88%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTINGFR---YFNLVLVTNVAGAGDIVRVSV 656
            GPW  A AT+YG  + +G    GGACG+ +     +   T+  +  LF +G  CG+C++++C  D Q C+  +  ++IT  N+ P     P            HFDL+   F +LA+         +GI+ + + RVPC   G  I F +  +    YF  VLV    G GD+V+V +
Sbjct:   53 GPWTKARATWYGQPNGAGPDDNGGACGFKHTNQYPFMSMTSCGNQPLFKDGKGCGSCYKIRCTKD-QSCSGRSETVIITDMNYYP---VAPF-----------HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYF-AVLVEYEDGDGDVVQVDL 214          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXB11_MAIZE (Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 56/178 (31.46%), Postives = 80/178 (44.94%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN--LVLVTNVAGAGDIVRVSVK 659
            G  W  A AT+YG    +G    GG CGY ++    +    A  +  +F +GL CG+CFE+KC   P  C+     + IT  N+ P                  HFDLA   F  +A+        +AGI+ + +RRV C+    + F +      N   +LV  V G GDIV V +K
Sbjct:   46 GSDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC-DKPAECSGKPVVVYITDMNYEP--------------IAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSKVTFHLEKGCNPNYLALLVKYVDGDGDIVAVDIK 208          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB9_MAIZE (Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 59/181 (32.60%), Postives = 86/181 (47.51%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNP-AILITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVK 659
            G W +A AT+YG  + +G    GGACG  N+    Y   TA  +  +F +G  CG+C+E++C   P+ C+ GNP  + IT  N+                P  P HFDL+   F  LA+          GI+ V +RRV C+   G +   +  +  N     VLV  VA  GDIV + ++
Sbjct:   41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CS-GNPVTVFITDMNY---------------EPIAPYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYVAVLVKFVADDGDIVLMEIQ 204          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB1_MAIZE (Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 59/181 (32.60%), Postives = 86/181 (47.51%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNP-AILITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVK 659
            G W +A AT+YG  + +G    GGACG  N+    Y   TA  +  +F +G  CG+C+E++C   P+ C+ GNP  + IT  N+                P  P HFDL+   F  LA+          GI+ V +RRV C+   G +   +  +  N     VLV  VA  GDIV + ++
Sbjct:   41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CS-GNPVTVYITDMNY---------------EPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQ 204          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB6_ORYSJ (Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 52/178 (29.21%), Postives = 82/178 (46.07%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTI--NGFRYFNLVLVTNVAGAGDIVRVSV 656
            G  W  A AT+YG    +G    GGACG+ N+    +   T+  +  +F +G  CG+C++++C  DP  C+     ++IT  N+ P                R HFDL+   F  +A+         +GI+ + +RRVPC   G  I F +       +  VLV      GD+V+V +
Sbjct:   41 GSGWLPARATWYGAPTGAGPDDNGGACGFKNVNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCNKDPS-CSGNIETVIITDMNYYP--------------VARYHFDLSGTAFGAMAKPGLNDKLRHSGIIDIQFRRVPCNYPGLKINFHVEEGSNPVYFAVLVEYEDLDGDVVQVDL 203          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB4_ARATH (Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 58/174 (33.33%), Postives = 83/174 (47.70%), Query Frame = 3
Query:  174 SAHATFYGGSDASGTMGGACGYGNLYSQG--YGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDL---AMPMFLKLAQ----YRAGIVPVSYRRVPCRKRGG---IRFTINGFRYFNLVLVTNVAGAGDIVRVSVK 659
            +A  T+YG    +G+ GGACGYG+  +    Y + +A    +LFNNG  CG C+++ C G P  C+ G+P I +T T+ CP         GG C     H DL   AM    K  Q      AG++ V+Y+R  C  RG     R       Y+   +V    G GD+  V ++
Sbjct:   35 TAGVTWYGEPFGAGSTGGACGYGSAVANPPLYAMVSAG-GPSLFNNGKGCGTCYQVVCIGHPA-CS-GSP-ITVTITDECP---------GGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEIQ 195          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB9_ORYSJ (Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXPB9 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 53/178 (29.78%), Postives = 83/178 (46.63%), Query Frame = 3
Query:  165 PWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA-------QYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVK 659
            PW  A AT+YG    SG+   GGACG  N+    Y    +  +  +F +G  CG+C+E+KC   P  C+     + IT  N+ P +                HFD +   F  +A         +AGI+ + +RRV C+  GG + T +  +  N     VLV  VA  GD++++ ++
Sbjct:   42 PWLPARATWYGQPYGSGSTDNGGACGIKNVNLPPYNGMISCGNVPIFKDGRGCGSCYEVKC-EQPAACSKQPVTVFITDMNYEPIS--------------AYHFDFSGKAFGAMACPGKETELRKAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKFVADDGDVIQMDLQ 204          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB3_ORYSJ (Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 54/189 (28.57%), Postives = 87/189 (46.03%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVKVP-----TPMAE 680
            W+ A AT+YG    +G    GGACG+ N     +   T+  +  +F +G  CG+C++++C   P  C+     ++IT  N+ P +              + HFDL+   F  +A+         AGI+ + ++RVPC    G++ T +     N     VLV    G GD+V+V +        TPM E
Sbjct:   42 WEVARATWYGAPTGAGPDDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCVNHPA-CSGNPETVIITDMNYYPVS--------------KYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRVPC-NFPGLKVTFHVEEGSNPVYFAVLVEYEDGDGDVVQVDLMEANSQSWTPMRE 214          
BLAST of FC931375 vs. ExPASy Swiss-Prot
Match: EXPB1_ORYSJ (Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXPB1a PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 56/181 (30.94%), Postives = 84/181 (46.41%), Query Frame = 3
Query:  159 GGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGY-GVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVK 659
            G  W  A AT+YG    +G    GGACGY ++    + G+N+   +  +F +G  CG+CFE+KC   P+ C+     I +T  N  P                  HFDL+   F  +A+        +AGI+   +RRV C+     + T +  +  N     +LV  VAG GD+V V +K
Sbjct:   38 GDKWLEAKATWYGAPKGAGPKDNGGACGYKDVDKAPFLGMNSCG-NDPIFKDGKGCGSCFEIKC-SKPEACSDKPALIHVTDMNDEP--------------IAAYHFDLSGLAFGAMAKDGKDEELRKAGIIDTQFRRVKCKYPADTKITFHIEKASNPNYLALLVKYVAGDGDVVEVEIK 202          
The following BLAST results are available for this feature:
BLAST of FC931375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
EXB10_MAIZE3.166e-1333.89Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2[more]
EXPB4_ORYSJ4.135e-1331.46Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB11_MAIZE5.400e-1331.46Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1[more]
EXPB9_MAIZE7.053e-1332.60Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2[more]
EXPB1_MAIZE7.053e-1332.60Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2[more]
EXPB6_ORYSJ9.211e-1329.21Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB4_ARATH9.211e-1333.33Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 ... [more]
EXPB9_ORYSJ2.680e-1229.78Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB3_ORYSJ2.680e-1228.57Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB1_ORYSJ2.680e-1230.94Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionC34104D12EF PostHarvP1 Citrus clementina cDNA clone C34104D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931375 ID=FC931375; Name=FC931375; organism=Citrus clementina; type=EST; length=715bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCACTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACAAA
CTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGCA
ACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCTC
GCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCTG
CAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTCA
ACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGTG
AGCGTGAAGGTGCCAACACCCATGGCTGAGCATGACCGCAACTGGGACAA
ACTGGCATCCACGCT
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