FC931379

Overview
NameFC931379
Unique NameFC931379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_AQUAE (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Aquifex aeolicus GN=ispD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.332e-15
Identity = 55/160 (34.38%), Postives = 89/160 (55.62%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG---AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I+LA G+G R+G    KQ+  L G+P+ ++S      + E  E+++V    + D     K K++  +K    G ERQDSV++ L +     ++V IHDSARPL      +K+ ++  ++G     V+  PA+ T+KE   E  V++TL+R  +W  QTPQ
Sbjct:    5 IILAAGRGSRIGFR--KQFATLCGKPLFMHSLEKVLDIFE--EVILVLPEDFLD-----KVKVHPKVKKVAGGPERQDSVFNALLQA--TGDIVVIHDSARPLA----TKKMFLEVAQLGDYHGKVVASPARDTLKEV-VEGKVIKTLNRSLIWHAQTPQ 148          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SHELP (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ispD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.088e-14
Identity = 51/162 (31.48%), Postives = 82/162 (50.62%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVL----MDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            I+ A G G RMGA +PKQYL L  QPI  ++         + ++++   P  S  F +  +  +  L   + GKER DSV S L +V   S    +HD+ARP + + D+ K++     +      A+L +P + T+K +     +  T+ R+ LW   TPQ+
Sbjct:   11 IVPAAGIGARMGAEIPKQYLMLNHQPILAHTLDRLLEHPRIDKVIIALSPEDSH-FAKLSQASHPKLMTVIGGKERADSVLSAL-KVASQSAWALVHDAARPCLSAADIDKLIAACETEEGHQQGAILAMPVRDTMKRSGKGGAIQETVCRENLWHALTPQL 170          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_MAGSA (Bifunctional enzyme ispD/ispF OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=ispDF PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.088e-14
Identity = 51/158 (32.28%), Postives = 82/158 (51.90%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            +++A G+G+R G ++PKQY  L G+ +  ++   F+   E+  +  V  P    +++     +N+ L+    G  RQDSV  GL  + D N + V IHD ARP +    + +V+    R   A+  VP   T+K    + FV  T+DR  L+  QTPQ
Sbjct:    7 LVVAAGRGRRFGGDLPKQYHDLAGRMVLRHTLAAFATNPEIGAVRAVIHPDDRQLYDMAAAGLNL-LEPVHGGATRQDSVRLGLDSLKDLNPDKVLIHDGARPFIDHGTIGRVIRALDRHPGALPVVPVADTLKR-GQDGFVADTVDRANLFRAQTPQ 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_BRASO (Bifunctional enzyme ispD/ispF OS=Bradyrhizobium sp. (strain ORS278) GN=ispDF PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.421e-14
Identity = 53/158 (33.54%), Postives = 79/158 (50.00%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQE-VDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            IL+A G+G R GA  PKQY  + G+ +   +   F+   EV  +  V +P   D+F      +  +   +  G  RQ SV +GL+  V    E+V IHD+ARP V    + + ++ A + GAA+   P   TIKE  +   +  T +R  L   QTPQ
Sbjct:   10 ILVAAGRGLRAGAGGPKQYRTIGGRTVIHRALAAFAEHPEVAVVQPVVNPDDIDVFNAAVAGLRHEAP-ARGGATRQASVLAGLEALVPHKPEIVLIHDAARPFVTPAVISRAIIAANKTGAAIPVAPVTDTIKEVGASGDITATPERAKLRIAQTPQ 166          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_PROMA (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Prochlorococcus marinus GN=ispD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.856e-14
Identity = 51/158 (32.28%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVL-GVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G GKRMGAN  K  L + G+ +  ++     R   +  I +V  PS  +      ++  +  K+   G  RQ+SV  GL+ +  +++ V IHD AR LV  +   K   + LR G +V+   P   TIK+ + + F+ +T +R  LW  QTPQ
Sbjct:    4 LIAAAGSGKRMGANCNKLLLKVAGRSVLAWTLDAVKRSNSISWIGIVGQPSDKEAIVSIFDECALQAKWINGGDSRQESVQLGLEGLPLDAKHVLIHDGARCLVEPELFDK-CSEMLRQGVSVIAATPVIDTIKKVSLDGFINKTFNRAELWAAQTPQ 160          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD2_LISMO (Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2 OS=Listeria monocytogenes GN=ispD2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.856e-14
Identity = 47/164 (28.66%), Postives = 89/164 (54.27%), Query Frame = 1
Query:  208 LLAGGKGKRMG-ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFN-----SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            +LAGGKG RMG  NMPKQYLPL G+PI +++   F      ++I++     + +  ++  +K   D +  +   G +R +++ +G++ V+        +++  HD+ RP +  + +++ +  AL  G+    +PA  TI E+ +  F+     R  +++ QTPQ
Sbjct:    6 ILAGGKGTRMGNVNMPKQYLPLKGKPIIVHTIEKFILNDRFEKIIIATPKDWINHTQDIIKKYIFDSRVIVIEGGTDRNETIMNGIRYVEKEFGLNEDDIIVTHDAVRPFITHRIIEENIDMALEFGSVDTVIPAVDTIVESTNHDFITDIPVRGNIYQGQTPQ 169          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_CHRSD (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=ispD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.424e-14
Identity = 53/162 (32.72%), Postives = 82/162 (50.62%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSV---YSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I+ A G+G+RMGA  PKQYL + G+P+  ++            + +  DP  +    E       D +    G+ER DSV    + L +V  + +LV +HD ARP V  +D+++ L +AL       +L  P   T+K A++   VV T+ R+ LW   TPQ
Sbjct:    7 IVPAAGQGRRMGAECPKQYLDIAGRPVLAHTLARLHEAFPEAALRLCLDPDDTRFSPEWVP--FADWQRVAGGRERVDSVENALASLADVAADDDLVLVHDVARPCVAVEDLRR-LREALTTSPEGGLLAAPVADTMKRADARGHVVHTVSREGLWHAMTPQ 165          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_VIBVY (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Vibrio vulnificus (strain YJ016) GN=ispD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14
Identity = 52/165 (31.52%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGL---QEVDFNSELVCIHDSARPLVLSKDVQKVLMD-ALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G G RM A+ PKQYL + G+ I  ++         + ++VV     DP YSD+        + D+     GKER DSV S L    +    ++ V +HD+ARP V  +D+  ++   +      +L  P + T+K AN++  +  T+DR  LW   TPQ+
Sbjct:   11 VVPAAGVGSRMKADRPKQYLQIHGKTILEHTIERLLSHPAITQVVVAVSEDDPYYSDLAIAQ----HPDIIRVAGGKERADSVLSALCFLSQQPQKTDWVLVHDAARPCVAHQDIDALIERCSSHETGGILATPVRDTMKRANAQQMIDHTVDRNALWHALTPQM 171          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_VIBVU (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Vibrio vulnificus GN=ispD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14
Identity = 51/165 (30.91%), Postives = 84/165 (50.91%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN---SELVCIHDSARPLVLSKDVQKVLMD-ALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G G RM A+ PKQYL + G+ I  ++         + ++VV     DP YS++        + D+     GKER DSV S L+ +      ++ V +HD+ARP V  +D+  ++   +      +L  P + T+K AN++  +  T+DR  LW   TPQ+
Sbjct:   11 VVPAAGVGSRMKADRPKQYLQIHGKTILEHTIERLLSHPAITQVVVAVSEDDPYYSELAIAQ----HPDIVRVAGGKERADSVLSALRFLSLQQQKADWVLVHDAARPCVAHQDIDALIERCSSHETGGILATPVRDTMKRANAQQMIDHTVDRNALWHALTPQM 171          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_LEPBL (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=ispD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14
Identity = 52/161 (32.30%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE-RQDSVYSGLQEVDFNSE-LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVI 681
            ++LAGG G RMG+ +PKQ+L    +PI +++   F    + K+IV+V  P +    E        +    + G E R  S+  GL  +   SE ++ IHD+ARP VL K++  +  +    G + L      T+ E  S       LDR+ +W M+TPQ I
Sbjct:   13 LILAGGTGTRMGSEIPKQFLEFSNEPILIHTLKKFQSWKKQKQIVLVSHPEFISETESICSPFLENQDCIIEGGETRHGSMLRGLSALTIQSEDILLIHDAARPFVLLKELDLLCENIRENGISTLASRTSETVLE-ESNGKTSSFLDREHIWFMKTPQGI 172          
The following BLAST results are available for this feature:
BLAST of FC931379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ISPD_AQUAE8.332e-1534.382-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_SHELP1.088e-1431.482-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPDF_MAGSA1.088e-1432.28Bifunctional enzyme ispD/ispF OS=Magnetospirillum ... [more]
ISPDF_BRASO1.421e-1433.54Bifunctional enzyme ispD/ispF OS=Bradyrhizobium sp... [more]
ISPD_PROMA1.856e-1432.282-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD2_LISMO1.856e-1428.66Putative 2-C-methyl-D-erythritol 4-phosphate cytid... [more]
ISPD_CHRSD2.424e-1432.722-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_VIBVY3.166e-1431.522-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_VIBVU3.166e-1430.912-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_LEPBL3.166e-1432.302-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]

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Properties
Property NameValue
Genbank descriptionC34104E04EF PostHarvP1 Citrus clementina cDNA clone C34104E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931379 ID=FC931379; Name=FC931379; organism=Citrus clementina; type=EST; length=750bp
CTGCTTCAGCTGAACCTTGCTCTGTCTTCTTCAACTTCTTCTCTCTCACT
GTTCCCAGACAACCACCAAACTTTCTCCAGAACTGGTCATAAAAATCAGT
TCTTTGGCTTGACAAGGAAGGCCAGGCTTGCAACATCCAGGATTAGATGT
TCTGCTAAAGTTGATAATGGTTCTGTCGTTGTTAAAGATAAGAGTGTATC
AGTTATTCTTTTGGCTGGAGGGAAGGGCAAAAGAATGGGTGCGAACATGC
CAAAGCAGTATCTACCACTTTTGGGTCAACCCATTGCATTGTATAGTTTC
TACACTTTCTCACGCATGGTTGAAGTGAAGGAAATTGTGGTAGTTTGTGA
TCCATCTTACAGTGACATCTTTGAAGAAACCAAAGAGAAGATCAATGTAG
ACCTTAAATTCTCACTTCCGGGGAAGGAGAGGCAAGATTCTGTTTACAGC
GGACTTCAGGAAGTTGATTTTAACTCTGAGCTCGTGTGCATCCATGATTC
TGCTAGACCTTTGGTATTATCTAAAGATGTGCAAAAGGTCCTTATGGATG
CTTTGCGGGTCGGAGCAGCTGTACTTGGTGTTCCTGCCAAAGCTACAATT
AAAGAGGCAAATAGCGAATCTTTTGTGGTTAGAACCCTGGACCGCAAAAC
TCTTTGGGAAATGCAGACCCCTCAGGTGATCAAGCCTGGCTTGCTTAAAA
AGGGTTTGAGCTTGTCATAGGGAAGGTCTTGAAGTACTGATGATGTATCT
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