FC931379

Overview
NameFC931379
Unique NameFC931379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_LEPBJ (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ispD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14
Identity = 52/161 (32.30%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKE-RQDSVYSGLQEVDFNSE-LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQVI 681
            ++LAGG G RMG+ +PKQ+L    +PI +++   F    + K+IV+V  P +    E        +    + G E R  S+  GL  +   SE ++ IHD+ARP VL K++  +  +    G + L      T+ E  S       LDR+ +W M+TPQ I
Sbjct:   13 LILAGGTGTRMGSEIPKQFLEFSNEPILIHTLKKFQSWKKQKQIVLVSHPEFISETESICSPFLENQDCIIEGGETRHGSMLRGLSALTIQSEDILLIHDAARPFVLLKELDLLCENIRENGISTLASRTSETVLE-ESNGKTSSFLDREHIWFMKTPQGI 172          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_DEHE1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Dehalococcoides ethenogenes (strain 195) GN=ispD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14
Identity = 54/160 (33.75%), Postives = 85/160 (53.12%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            +++A G+ +RMG    K +  L G+P+  ++   F +  E+ +I +V         +E  ++ N     ++   G+ RQDSV SGL  +  +   V IHD ARPL+    + + L  A   G+AV  VP K T+KE + E  V +TL R+ L  +QTPQV
Sbjct:   10 VIVAAGQSRRMGGQ-DKIFARLSGKPVLAHTLSVFQQSPEIDDIALVVSEHNLKKAKELVKEYNFSKVIAICSGGELRQDSVSSGLTAL-CDCGWVLIHDGARPLLDPVSIPEGLEAAKLCGSAVAAVPLKDTVKEISPEGLVEKTLPREKLISVQTPQV 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_GRABC (Bifunctional enzyme ispD/ispF OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=ispDF PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14
Identity = 55/159 (34.59%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQE-VDFNSELVCIHDSARPLVLSKDVQKVLMDALRV-GAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            IL+AGG G R G+++PKQ+LP+ G+P+  +     S  V++ +  V C    + + +       VD      GKERQDSV +GL+  V +  ++V IHD+ARP      ++  L++AL++   A+  VP   T+K A + + +  T+ R+ L+  QTPQ
Sbjct:    6 ILVAGGSGSRFGSDIPKQFLPVGGKPLIRHGAERLSAKVDLLQ-PVGCADDIAPLLQGLDHLPIVD-----GGKERQDSVRAGLEALVPYAPDIVLIHDAARPYFPDHTIED-LIEALQIHDGAIPAVPVADTLKRA-AGNIIDSTVPREGLYRAQTPQ 156          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_VIBCH (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Vibrio cholerae GN=ispD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 58/166 (34.94%), Postives = 87/166 (52.41%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDI-FEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN--SELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            I+ A G G RM A+ PKQYL LL + +  ++         ++ +VV     DP ++++        I VD      GKER DSV S L+ V  +  SE V +HD+ARP V   D+ +++  AL   +GA +L  P + T+K  +    +V T+DR  LW   TPQ+
Sbjct:    7 IVPAAGVGSRMQADRPKQYLTLLDKTVLEHTVEHLLEHPLIEHVVVAVSADDPYFANLPLAHHPRVIRVD-----GGKERADSVLSALEYVCQHRLSEWVLVHDAARPCVTHADITQLITTALAHPIGA-ILASPVRDTMKRGDHLQQIVHTVDRTALWHALTPQM 166          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_TRIEI (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Trichodesmium erythraeum (strain IMS101) GN=ispD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.400e-14
Identity = 48/159 (30.19%), Postives = 79/159 (49.69%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RMG +  K  L LLG+ +  ++     +   +  I ++  P     F++    ++ D    L   G  RQ+SVY+GLQ +   +E V IHD AR L   + + +  ++ L+    +  VP K TIK  +    +  T +R+ LW  QTPQ
Sbjct:    4 LIPAAGIGRRMGGSRNKLLLTLLGKSLLSWTLEAAVKSDHITWIGIIGQPIDFPDFQKNISDLSTDKHIELIEGGATRQESVYNGLQALPSAAERVLIHDGARCLATPELLDRCAVEILKCPGIIASVPVKDTIKVVDPSGIIQDTPNRRNLWAAQTPQ 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SHEPW (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=ispD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.400e-14
Identity = 52/160 (32.50%), Postives = 79/160 (49.38%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDP--SYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV-GAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I+ A G G RMGA +PKQYL L  Q I  ++        ++ +++V  +P   +  +  + + K    L     G ER DSV + LQ+ D NS  V +HD+ARP +   D+ K++         A+LG P + T+K       +  T+ R  LW   TPQ
Sbjct:   11 IVPAAGIGSRMGAEVPKQYLALNEQTILGHTLDCLLNHPQIAQVIVALNPEDKHFCLLPQAQHK---KLLTVTGGNERADSVLAALQQADENS-WVLVHDAARPCLSHLDIDKLIASTSTFPQGAILGAPVRDTMKRTGEHGEISNTVCRDRLWHALTPQ 166          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_NITEC (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Nitrosomonas eutropha (strain C91) GN=ispD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.400e-14
Identity = 54/170 (31.76%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSD----IFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF-----NSELVCIHDSARPLVLSKDVQKVLMDAL---RVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G G RMG ++PKQY PL G+P+  ++  T   +  +  + +V  P  ++     + E   KI +   F+  G  R +SV +GL+ +       + + + +HD+ARP  LS  + + L+D L    VG  +L VP   T+K A+    V+ T  R+ LW+ QTPQ+
Sbjct:    7 LITAAGSGSRMGEDIPKQYRPLAGKPMIYHALRTLCGIARISTVCIVLAPEDTEWIRHNWREFAGKIQI---FNCGGATRAESVTNGLKALRAANHVQDQDWILVHDAARP-GLSTTLVERLLDQLADDEVG-GLLAVPLADTLKRADDAGRVICTEPRERLWQAQTPQM 171          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_LACC3 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Lactobacillus casei (strain ATCC 334) GN=ispD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.400e-14
Identity = 50/162 (30.86%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV-DLKFSLPGKE-RQDSVYSGLQEVD---FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I+LAGG GKRMG  +PKQ++ +  +PI +Y+  +F R  ++ ++VVVC   ++D       +  +  +K+ + G    Q S+ + +Q +       ++V IHD  RPLV    +  V++     G AV  +P    I    +E    + +DR TL  + TPQ
Sbjct:    5 IVLAGGVGKRMGMEIPKQFVMVNEKPIIIYTLESFDRHPKIDQVVVVCKQGWADTMWGYIREFGIKKVKWVISGGSIVQKSINNAVQFLSDKCVEDDIVVIHDGIRPLVDEHVLSDVIVKCQEYGNAVTSLPYNEQIFIKETEKTTNKYIDRNTLRRVSTPQ 166          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_CALS8 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=ispD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.400e-14
Identity = 47/158 (29.75%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G GKR G + PKQ+L L  + +  YS   F     +  +V++    Y +I +  KEK    L +     ER  +V  GL+ +    + V IHD+ RP +  + ++K++++     A    V AK T+K    + +V  T+ R+ ++ +QTPQV
Sbjct:    6 LVCAAGSGKRFGGSTPKQFLFLEDKMVIEYSLCVFENSPFIDGVVILIPNGYKNIGDVLKEKYKKVLFWDYGEDERAKTVKKGLELIKGMCDFVAIHDAVRPFIDLELIEKLILEVKSSFAVAPAVSAKDTVKYV-VDGYVQNTIPRENVYLVQTPQV 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_PSEPG (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Pseudomonas putida (strain GB-1) GN=ispD PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.053e-14
Identity = 56/167 (33.53%), Postives = 88/167 (52.69%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF----NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G G RM A+ PKQYL L GQ +  +S   F     +  +VV     DP +  +   +  +I    + +  G+ER DSV + L  +      +S+ V +HD+ARP +   D+ K+L +     VG  +L VPA+ T+K A+    V  T+DR T+W+  TPQ+
Sbjct:   11 VIPAAGVGARMAADRPKQYLELAGQTLLEHSLDCFLGHPALAGVVVSIADDDPYWPGLRYASDPRI----QRAAGGRERADSVLNALLVLHAQGASDSDWVLVHDAARPNLARSDLDKLLSELADDPVGG-LLAVPARDTLKRADGNGRVSATVDRSTIWQAYTPQM 172          
The following BLAST results are available for this feature:
BLAST of FC931379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ISPD_LEPBJ3.166e-1432.302-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_DEHE13.166e-1433.752-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPDF_GRABC3.166e-1434.59Bifunctional enzyme ispD/ispF OS=Granulibacter bet... [more]
ISPD_VIBCH4.135e-1434.942-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_TRIEI5.400e-1430.192-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_SHEPW5.400e-1432.502-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_NITEC5.400e-1431.762-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_LACC35.400e-1430.862-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_CALS85.400e-1429.752-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_PSEPG7.053e-1433.532-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34104E04EF PostHarvP1 Citrus clementina cDNA clone C34104E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931379 ID=FC931379; Name=FC931379; organism=Citrus clementina; type=EST; length=750bp
CTGCTTCAGCTGAACCTTGCTCTGTCTTCTTCAACTTCTTCTCTCTCACT
GTTCCCAGACAACCACCAAACTTTCTCCAGAACTGGTCATAAAAATCAGT
TCTTTGGCTTGACAAGGAAGGCCAGGCTTGCAACATCCAGGATTAGATGT
TCTGCTAAAGTTGATAATGGTTCTGTCGTTGTTAAAGATAAGAGTGTATC
AGTTATTCTTTTGGCTGGAGGGAAGGGCAAAAGAATGGGTGCGAACATGC
CAAAGCAGTATCTACCACTTTTGGGTCAACCCATTGCATTGTATAGTTTC
TACACTTTCTCACGCATGGTTGAAGTGAAGGAAATTGTGGTAGTTTGTGA
TCCATCTTACAGTGACATCTTTGAAGAAACCAAAGAGAAGATCAATGTAG
ACCTTAAATTCTCACTTCCGGGGAAGGAGAGGCAAGATTCTGTTTACAGC
GGACTTCAGGAAGTTGATTTTAACTCTGAGCTCGTGTGCATCCATGATTC
TGCTAGACCTTTGGTATTATCTAAAGATGTGCAAAAGGTCCTTATGGATG
CTTTGCGGGTCGGAGCAGCTGTACTTGGTGTTCCTGCCAAAGCTACAATT
AAAGAGGCAAATAGCGAATCTTTTGTGGTTAGAACCCTGGACCGCAAAAC
TCTTTGGGAAATGCAGACCCCTCAGGTGATCAAGCCTGGCTTGCTTAAAA
AGGGTTTGAGCTTGTCATAGGGAAGGTCTTGAAGTACTGATGATGTATCT
back to top