FC931379

Overview
NameFC931379
Unique NameFC931379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_PSEA6 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=ispD PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.053e-14
Identity = 50/158 (31.65%), Postives = 80/158 (50.63%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR-VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM A+ PKQYL + G+ I  ++        ++++I+V  +P     F+         +K    G ER DSV +GL  +  N++ V +HD+ARP +   D+ K+L  A      A+L    + T+K  NS   ++ T  R  LW   TPQ
Sbjct:   10 VVPAAGIGQRMQADRPKQYLTIAGKTILEHTLENLYAHPQIEQIIVAINP-LDQYFDSLPIASKTWVKRVDGGGERADSVLAGLNSLQ-NADWVLVHDAARPCLAQDDLSKLLATAEHSEHGAILACRVRDTMKRGNSSHDILHTESRDNLWHALTPQ 165          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_PSEPF (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Pseudomonas fluorescens (strain Pf0-1) GN=ispD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.212e-14
Identity = 58/168 (34.52%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVV---VCDPSYSDIFEETKEKIN-VDLKFSLPGKERQDSVYSGLQEVDF----NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G G RM A+ PKQYL L G+ I  +S   F     +K +VV   V DP + ++   +  +I  VD      G ER  SV + L  +      + + V +HD+ARP +   D+ K+L +     VG  +L VPAK T+K  +    VV T+DR  +W+  TPQ+
Sbjct:   11 VIPAAGVGARMAADRPKQYLQLGGRTILEHSLGCFLDHPSLKGLVVSLAVDDPYWPNLASASDPRIQRVD-----GGTERSGSVLNALLHLHAQGADDEDWVLVHDAARPNLSRDDLDKLLAELANDPVGG-LLAVPAKDTLKRVDKHGRVVETVDRSVIWQAYTPQM 172          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_PSEE4 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Pseudomonas entomophila (strain L48) GN=ispD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.212e-14
Identity = 58/169 (34.32%), Postives = 88/169 (52.07%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGL----QEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G G RM A+ PKQYL L GQ I  +S   F     +K +VV     DP +  +      +   DL+      G+ER DSV + L     +   + + V +HD+ARP +   D+ K+L +     VG  +L VPA+ T+K A ++  V  T+DR T+W+  TPQ+
Sbjct:   11 VIPAAGIGARMAADRPKQYLQLGGQTILEHSLDCFLDHSALKGVVVSIAEDDPYWPGL------RCASDLRIQRAPGGRERADSVLNALLLLHAQGASDDDWVLVHDAARPNLARSDLDKLLSELADDPVGG-LLAVPARDTLKRAGADGRVAATVDRSTVWQAYTPQM 172          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_CYAA5 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Cyanothece sp. (strain ATCC 51142) GN=ispD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.212e-14
Identity = 54/163 (33.13%), Postives = 81/163 (49.69%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP------GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G GKRMG+N  K  L LLG+P+  ++        +++ + ++  P Y   F E K  I   + F+ P      G+ RQ SVY+GLQ +   ++ V IHD AR LV      +   + L     +  +  K TIK  +S  F+  T +R  LW  QTPQ
Sbjct:    4 LIPAAGMGKRMGSNRNKLLLTLLGKPLLSWTLLAAEASQKIEWVGIIGQP-YD--FPEFKT-ILTTISFTKPVELIQGGETRQASVYNGLQALPKAADNVLIHDGARCLVTPDLFDRCAEELLTCQGLIAAISVKDTIKIVDSNQFIKDTPNRSNLWAAQTPQ 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_CORDI (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Corynebacterium diphtheriae GN=ispD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.212e-14
Identity = 54/163 (33.13%), Postives = 80/163 (49.08%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSD-----IFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLG-VPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A GKG R+GA++PK Y+PL   P+ + S         V E++V+  P   D     +        ++ ++    G ER DSV+ GLQ +     +V IHDSAR L     + +V    L    AV+  VP   TIK  +  + VV T  R+ L  +QTPQ
Sbjct:    8 LVAAAGKGTRLGADLPKAYVPLRDIPLVVRSVRAMITSAVVDEVIVIISPQMQDYAAALLLRWGLFSADIPVRLVHGGAERADSVWCGLQAIADTDAVVLIHDSARALTPPGMIARVARAVLDGNKAVIPVVPVADTIKTVHGTT-VVATPPRRDLRAVQTPQ 169          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_BACFN (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=ispD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.212e-14
Identity = 52/163 (31.90%), Postives = 87/163 (53.37%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK---EANSESFVVRTLDRKTLWEMQTPQV 678
            +++AGGKG RMG+ +PKQ+LP+ G+P+ + +   F R  E  +I++V      D + E  E+   D+K  +   G+ R  SV +GL  V+    +V IHD  RP V  + + +  ++A+   A +  +    T++   E+ SE     T+ R     +QTPQV
Sbjct:    6 LIVAGGKGLRMGSELPKQFLPIGGKPVLMRTLEAFHRFDEKMQIILVLPREQQDFWRELCEEHGFDIKHLIADGGETRFHSVKNGLALVN-GIGVVGIHDGVRPFVSQEVIARCFLEAVVRKAVIPVIDVVETVRHLTESGSE-----TVSRNDYKLVQTPQV 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_THESQ (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Thermotoga sp. (strain RQ2) GN=ispD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.203e-13
Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET--KEKINVDLKFSLPGKERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVP-AKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ILLA GKG+RM  N+PKQ+L + G+ +  Y   TF +   +  +V+V    + ++ E+    EK+   L     G  R  SV S L+ ++ F+   V +HDSARP +  K V +VL  A   GAA L +  + A ++  N     +  + RK ++ + TPQ
Sbjct:    5 ILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKV---LGIVEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVENDR---IEYIPRKGVYRILTPQ 159          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_THEMA (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Thermotoga maritima GN=ispD PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.203e-13
Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET--KEKINVDLKFSLPGKERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVP-AKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ILLA GKG+RM  N+PKQ+L + G+ +  Y   TF +   +  +V+V    + ++ E+    EK+   L     G  R  SV S L+ ++ F+   V +HDSARP +  K V +VL  A   GAA L +  + A ++  N     +  + RK ++ + TPQ
Sbjct:    5 ILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKV---LGIVEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVENDR---IEYIPRKGVYRILTPQ 159          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_THEFY (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Thermobifida fusca (strain YX) GN=ispD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.203e-13
Identity = 55/164 (33.54%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  208 LLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD--LKFSLPGKERQDSVYSGLQEVD--FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI----KEANSESFVVRTLDRKTLWEMQTPQ 675
            +LAGG G RMG+  PKQ L L GQ I   S        EV E+VVV + ++    E+   +   D   +    G  R +S  + LQ VD   +++L+ +HD+ARPLV  + +   + +   VGA  + VP+  T+     +A+    +    DR  L  MQTPQ
Sbjct:   17 VLAGGVGSRMGSAHPKQLLRLAGQTILERSVAALCAAPEVDEVVVVMNAAHLAEAEKILAEGRYDKVSRIVPGGASRSESSLAALQAVDDYDDNDLLLLHDAARPLVSGRTITACVTELTEVGAVGVAVPSSDTVVQVTLDASGREVIAAVPDRAALRRMQTPQ 180          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SOLUE (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Solibacter usitatus (strain Ellin6076) GN=ispD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.203e-13
Identity = 57/170 (33.53%), Postives = 84/170 (49.41%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMP-------KQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEE--TKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVR---TLDRKTLWEMQTPQV 678
            IL A G G RMG           KQ++ L G PI +++   F+    V EIV+      ++   E  T+E     ++    G  RQ+SV + L  +  + ELV +HD+ RP +    +  V  +A   GAA++GVPA  T+K+    +  VR   TL R+ L   QTPQV
Sbjct:    6 ILPAAGLGTRMGKGTAEKAGTSRKQFMLLEGSPILMHTVRKFAASPRVGEIVIAVRAEDTEWVREVVTQEFPGGRVRVVAGGNSRQESVENALSSLSPDCELVAVHDAVRPFIDLDIMHAVFDEAAETGAAIVGVPAVDTVKQVTRGTTHVRVRATLPREKLVMAQTPQV 175          
The following BLAST results are available for this feature:
BLAST of FC931379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ISPD_PSEA67.053e-1431.652-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_PSEPF9.212e-1434.522-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_PSEE49.212e-1434.322-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_CYAA59.212e-1433.132-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_CORDI9.212e-1433.132-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_BACFN9.212e-1431.902-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_THESQ1.203e-1333.542-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_THEMA1.203e-1333.542-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_THEFY1.203e-1333.542-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_SOLUE1.203e-1333.532-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]

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Properties
Property NameValue
Genbank descriptionC34104E04EF PostHarvP1 Citrus clementina cDNA clone C34104E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931379 ID=FC931379; Name=FC931379; organism=Citrus clementina; type=EST; length=750bp
CTGCTTCAGCTGAACCTTGCTCTGTCTTCTTCAACTTCTTCTCTCTCACT
GTTCCCAGACAACCACCAAACTTTCTCCAGAACTGGTCATAAAAATCAGT
TCTTTGGCTTGACAAGGAAGGCCAGGCTTGCAACATCCAGGATTAGATGT
TCTGCTAAAGTTGATAATGGTTCTGTCGTTGTTAAAGATAAGAGTGTATC
AGTTATTCTTTTGGCTGGAGGGAAGGGCAAAAGAATGGGTGCGAACATGC
CAAAGCAGTATCTACCACTTTTGGGTCAACCCATTGCATTGTATAGTTTC
TACACTTTCTCACGCATGGTTGAAGTGAAGGAAATTGTGGTAGTTTGTGA
TCCATCTTACAGTGACATCTTTGAAGAAACCAAAGAGAAGATCAATGTAG
ACCTTAAATTCTCACTTCCGGGGAAGGAGAGGCAAGATTCTGTTTACAGC
GGACTTCAGGAAGTTGATTTTAACTCTGAGCTCGTGTGCATCCATGATTC
TGCTAGACCTTTGGTATTATCTAAAGATGTGCAAAAGGTCCTTATGGATG
CTTTGCGGGTCGGAGCAGCTGTACTTGGTGTTCCTGCCAAAGCTACAATT
AAAGAGGCAAATAGCGAATCTTTTGTGGTTAGAACCCTGGACCGCAAAAC
TCTTTGGGAAATGCAGACCCCTCAGGTGATCAAGCCTGGCTTGCTTAAAA
AGGGTTTGAGCTTGTCATAGGGAAGGTCTTGAAGTACTGATGATGTATCT
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