FC931379

Overview
NameFC931379
Unique NameFC931379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_GEOMG (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=ispD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.203e-13
Identity = 57/166 (34.34%), Postives = 82/166 (49.40%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS------LPGKERQDSVYSGLQEVDFNS---ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G GKRMGA++ KQYL L G PI   +   F R   V  I VV     +D     +E++     FS        G ERQ SV +GL+ ++  +   +++ IHD  RP V    + +    A     A++ VPAK T+K    +  +  T  R+TLW  QTPQ
Sbjct:    6 LIPAAGMGKRMGASINKQYLLLGGMPILARTLEVFERSPLVDGIFVVIP---ADEIPFCREQVVERHGFSKVRSIVAGGAERQQSVLNGLRAMEGTAGEYDVILIHDGVRPFVTEDILGRATATARENDGALVAVPAKDTVKVV-EDGIITATPSRETLWLAQTPQ 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_BACFR (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Bacteroides fragilis GN=ispD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.203e-13
Identity = 52/163 (31.90%), Postives = 86/163 (52.76%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK---EANSESFVVRTLDRKTLWEMQTPQV 678
            +++AGGKG RMG+ +PKQ+LP+ G+P+ + +   F R  E  +I++V      D + E  E+   D+K  +   G+ R  SV +GL  V+    +V IHD  RP V  + + +   +A+   A +  +    T++   E+ SE     T+ R     +QTPQV
Sbjct:    6 LIVAGGKGLRMGSELPKQFLPIDGKPVLMRTLEAFHRFDEKMQIILVLPREQQDFWRELCEEHGFDIKHQIADGGETRFHSVKNGLALVN-GIGVVGIHDGVRPFVSQEVIARCFREAVVRKAVIPVIDVVETVRHLTESGSE-----TVSRNDYKLVQTPQV 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_RHOPA (Bifunctional enzyme ispD/ispF OS=Rhodopseudomonas palustris GN=ispDF PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.203e-13
Identity = 53/158 (33.54%), Postives = 80/158 (50.63%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I++A G+G R GA  PKQY  L G+P+   +   F     V  +  V +P  +++F      +N        G  RQ SV +GL+ + +   ++V IHD+AR  V  + + + +  A   GAA+  VP   TIK+ +S   V  T DR +L   QTPQ
Sbjct:   10 IIVAAGRGLRAGAGGPKQYRSLAGRPVIARAMEPFCTHPGVMAVQPVTNPDDTEMFNAAVAGLNFRPAVG-GGATRQASVRAGLEALAELKPDIVLIHDAARCFVTPELISRAITAAGATGAALPVVPVTDTIKQVDSSGAVDATPDRASLRIAQTPQ 166          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_RHOBA (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Rhodopirellula baltica GN=ispD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.571e-13
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN--VDLKFSLPGKERQDSVYSGLQEVD-FNSE----------LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            I+ A G G+R G+   K +  L G+P+  ++   F    +V++IV+         F E    I+  V +     G  R +SV + L++V  F +E          LV IHD+ARPLV   D+ +V+  A   GAA+L  P   T+K A  +     T+DR+  +   TPQV
Sbjct:   10 IMPAAGSGQRFGSQSNKLFAHLDGKPLWQHAIDRFQHRGDVRQIVLAVSEEDESRFREQIAAISSAVPIHLVRGGATRSESVGAALEQVKRFAAESAAANASTQTLVAIHDAARPLVRQSDLDRVIAKAAETGAAILAAPVSGTLKRATGDG--SETVDRRNTYVALTPQV 178          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_FRASC (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Frankia sp. (strain CcI3) GN=ispD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.571e-13
Identity = 55/158 (34.81%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLG-VPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I+ A G+G+R+G   PK    L G+P+ + +  +  R   V +IVV   P+  D   +    +  D+     G ER DSV   L+ VD +  +V +HD+ARPL   + V  V    L    AV+  VP   T+KE +++  VVRT  R  L  +QTPQ
Sbjct:   17 IVPAAGRGERLGGGTPKALRALGGRPMLVRTVESLRRSRLVTQIVVAAPPTLVDAVAQL---LGGDVYVIAGGAERVDSVRRALRAVDDDVSVVLVHDAARPLTPPELVDAVAAAVLDGHPAVIPVVPLADTVKEVDADGRVVRTPPRDGLRAVQTPQ 171          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_ANADE (Bifunctional enzyme ispD/ispF OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=ispDF PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.571e-13
Identity = 57/160 (35.62%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVR---TLDRKTLWEMQTPQ 675
            IL AGG G+R G  + KQ+L L G+ +   S    +    V  +VVV  P      E     +   ++    G  R DSV +GL   D    +V +HD+ARP   +    +V   A R GAA+  +PA  T+K A + + V R   TLDR+T+W  QTPQ
Sbjct:   10 ILAAGGSGQRAG--VAKQWLVLGGESVLRRSARVLAACDAVDGLVVVVPPGDEARGEAELAGLGKPVRAVAGGPARADSVRNGLAAAD--GAVVLVHDAARPFASAALAGRVAEAAARDGAALAALPATDTVKRAEAGAEVPRVLETLDRRTVWLAQTPQ 165          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_THEP1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=ispD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.052e-13
Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET--KEKINVDLKFSLPGKERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVP-AKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ILLA GKG+RM  N+PKQ+L + G+ +  Y   TF +   +  +V+V    + ++ E+    EK+   L     G  R  SV S L+ ++ F+   V +HDSARP +  K V +VL  A   GAA L +  + A ++  N     +  + RK ++ + TPQ
Sbjct:    5 ILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKV---LGIVEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVENDR---MEYIPRKGVYRILTPQ 159          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SHEDO (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=ispD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.052e-13
Identity = 50/158 (31.65%), Postives = 77/158 (48.73%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV-GAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I+ A G G RM A MPKQYL L  Q I  ++        ++ +++V   P + D+F    +  +  L   + G ER DSV + L  V        +HD+ARP +   D+ K+L         A+L +P + T+K ++    +  T+DR  LW   TPQ
Sbjct:   16 IVPAAGIGARMAAGMPKQYLTLGAQSILGHTLDALLSHPQIAQVIVALHP-HDDMFLGLPQAKHSKLLTVIGGGERADSVLAAL-AVAPQDAWALVHDAARPCLTHSDIDKLLASTSEFPQGAILAMPVRDTMKRSDDTGVINHTVDRALLWHALTPQ 171          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_GLOVI (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Gloeobacter violaceus GN=ispD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.052e-13
Identity = 50/160 (31.25%), Postives = 79/160 (49.38%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN--VDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSES-FVVRTLDRKTLWEMQTPQ 675
            ++ A G+G RMGA+  K  LPL G+P+  ++    ++    + I ++  P   +      +K+   V + +   G+ RQ SVY GL  +   ++ V IHD AR L      ++         A V  VP K TIK+   +S  V +T+ R+ LW  QTPQ
Sbjct:    4 LIPAAGRGSRMGADGNKLLLPLSGRPLLAWTLAAAAQAPSTRWIGIIGQPMDEEAIRLLAQKLGLRVPVHWIEGGETRQQSVYRGLLALPVEAQQVLIHDGARCLASPALFERCAAALAEFSAIVAAVPVKDTIKQVYPQSRQVEKTIPREQLWAAQTPQ 163          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SERP5 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Serratia proteamaculans (strain 568) GN=ispD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.680e-13
Identity = 49/161 (30.43%), Postives = 88/161 (54.66%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVL--MDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQV 678
            +L A G G RM A+ PKQYL +  Q I  ++ +   R   + +++V   P     F +     +  ++ ++ G++R DSV +GLQ     ++ V +HD+ARP + ++D++++L   +   VG  +L  P + T+K A    S +  T++R+ LW   TPQ+
Sbjct:   14 VLPAAGIGSRMQADCPKQYLTIGHQTILEHAIHALLRHPRIPQVIVAIGPDDQQ-FHQLPIAKDPRVRVTVGGQQRADSVMAGLQLAG-EAKWVLVHDAARPCLHAEDLERLLAITEHSEVG-GILAAPVRDTMKRAEPGRSTISHTVERQDLWHALTPQL 171          
The following BLAST results are available for this feature:
BLAST of FC931379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ISPD_GEOMG1.203e-1334.342-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_BACFR1.203e-1331.902-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPDF_RHOPA1.203e-1333.54Bifunctional enzyme ispD/ispF OS=Rhodopseudomonas ... [more]
ISPD_RHOBA1.571e-1331.582-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_FRASC1.571e-1334.812-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPDF_ANADE1.571e-1335.63Bifunctional enzyme ispD/ispF OS=Anaeromyxobacter ... [more]
ISPD_THEP12.052e-1333.542-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_SHEDO2.052e-1331.652-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_GLOVI2.052e-1331.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_SERP52.680e-1330.432-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]

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Properties
Property NameValue
Genbank descriptionC34104E04EF PostHarvP1 Citrus clementina cDNA clone C34104E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931379 ID=FC931379; Name=FC931379; organism=Citrus clementina; type=EST; length=750bp
CTGCTTCAGCTGAACCTTGCTCTGTCTTCTTCAACTTCTTCTCTCTCACT
GTTCCCAGACAACCACCAAACTTTCTCCAGAACTGGTCATAAAAATCAGT
TCTTTGGCTTGACAAGGAAGGCCAGGCTTGCAACATCCAGGATTAGATGT
TCTGCTAAAGTTGATAATGGTTCTGTCGTTGTTAAAGATAAGAGTGTATC
AGTTATTCTTTTGGCTGGAGGGAAGGGCAAAAGAATGGGTGCGAACATGC
CAAAGCAGTATCTACCACTTTTGGGTCAACCCATTGCATTGTATAGTTTC
TACACTTTCTCACGCATGGTTGAAGTGAAGGAAATTGTGGTAGTTTGTGA
TCCATCTTACAGTGACATCTTTGAAGAAACCAAAGAGAAGATCAATGTAG
ACCTTAAATTCTCACTTCCGGGGAAGGAGAGGCAAGATTCTGTTTACAGC
GGACTTCAGGAAGTTGATTTTAACTCTGAGCTCGTGTGCATCCATGATTC
TGCTAGACCTTTGGTATTATCTAAAGATGTGCAAAAGGTCCTTATGGATG
CTTTGCGGGTCGGAGCAGCTGTACTTGGTGTTCCTGCCAAAGCTACAATT
AAAGAGGCAAATAGCGAATCTTTTGTGGTTAGAACCCTGGACCGCAAAAC
TCTTTGGGAAATGCAGACCCCTCAGGTGATCAAGCCTGGCTTGCTTAAAA
AGGGTTTGAGCTTGTCATAGGGAAGGTCTTGAAGTACTGATGATGTATCT
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