FC931379

Overview
NameFC931379
Unique NameFC931379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_HAEDU (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Haemophilus ducreyi GN=ispD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.680e-13
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I+ A G G RM A +PKQYL L G+ I  ++   F    ++ +IV+     D  +  I   T +KI    +    G  R +SV++ LQ +D +S    +HD+ARP +   D+ K+L    + G A+L  P   T+K A     +  T DR TLW   TPQ
Sbjct:    8 IIPASGIGSRMNAALPKQYLTLQGKTILEHTVAIFLNHPQIDKIVIALSANDQHHQHISLLTSDKI----QLVNGGASRAESVFNALQSIDEHS-WALVHDAARPCLKRSDLDKLLQITDQNG-AILASPVVDTLKRAEGNK-ISHTEDRTTLWHALTPQ 160          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SYNJA (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ispD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.500e-13
Identity = 55/165 (33.33%), Postives = 81/165 (49.09%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFN---SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK--EANSESFVVR-TLDRKTLWEMQTPQ 675
            ++ A G GKRMGA + K  LPLLGQPI  ++     R   ++ I ++  P      E+    +++     L   G  RQ+SVY G++ + +N    E V IHD AR L   K   +      +V   + G+P K TIK  E   +   ++ T +R  LW  QTPQ
Sbjct:    4 LIPAAGSGKRMGAAVNKLLLPLLGQPILAWTLQAADRASSIEWIGILSQPGDWPAIEQILAAMDLSTPVQLLQGGATRQESVYRGVEYL-YNLGTVERVLIHDGARCLATPKLFDRCSAALQQVDGLIAGIPVKDTIKVTETGPKGIQIQSTPERSRLWAAQTPQ 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_PSEPW (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Pseudomonas putida (strain W619) GN=ispD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.500e-13
Identity = 55/167 (32.93%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGL----QEVDFNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G G RM A+ PKQYL L GQ +  +S   F     +K +VV     DP +  +   +  +I    + +  G+ER DSV + L     +   +++ V +HD+ARP +   D+ ++L +     VG  +L VPA+ T+K A++   V  T+DR T+W+  TPQ+
Sbjct:   11 VIPAAGVGARMAADRPKQYLQLGGQTLLEHSLDCFLGHPTLKGVVVSIAADDPYWPGLRCASDPRI----QRASGGRERADSVLNALLLLHAQDAADTDWVLVHDAARPNLARTDLDRLLSELADDPVGG-LLAVPARDTLKRADANGRVSATVDRSTIWQAYTPQM 172          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_DEHSC (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Dehalococcoides sp. (strain CBDB1) GN=ispD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.500e-13
Identity = 52/160 (32.50%), Postives = 83/160 (51.88%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            +++A G+ +RM     K +  L G+P+  ++   F    +V +I +V      +  +E  ++ N     ++   G  RQDSV SGL  +  +   + IHD ARPL+    + + L  A   G+A+  VP K TIKE + E  V +TL R+ L  +QTPQV
Sbjct:   10 VIVAAGQSRRM-EGQDKIFALLAGKPVLAHTLSVFQESPQVDDIALVMAEHNIEKAKELVKEYNFSKVIAICSGGTLRQDSVRSGLSAL-CDCGWILIHDGARPLLEPDSIPEGLEAAKLCGSAIAAVPLKDTIKEISPEGLVEKTLPRERLISVQTPQV 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_DEHSB (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Dehalococcoides sp. (strain BAV1) GN=ispD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.500e-13
Identity = 52/160 (32.50%), Postives = 83/160 (51.88%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            +++A G+ +RM     K +  L G+P+  ++   F    +V +I +V      +  +E  ++ N     ++   G  RQDSV SGL  +  +   + IHD ARPL+    + + L  A   G+A+  VP K TIKE + E  V +TL R+ L  +QTPQV
Sbjct:   10 VIVAAGQSRRM-EGQDKIFALLAGKPVLAHTLSVFQESPQVDDIALVMAEHNIEKAKELVKEYNFSKVIAICSGGTLRQDSVRSGLSAL-CDCGWILIHDGARPLLEPDSIPEGLEAAKLCGSAIAAVPLKDTIKEISPEGLVEKTLPRERLISVQTPQV 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_XYLFT (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=ispD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.572e-13
Identity = 52/163 (31.90%), Postives = 84/163 (51.53%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDI-FEETKEKINVDLKFSLPGKERQDSVYSG---LQEVDFNSELVCIHDSARPLVLSKDVQKVL-MDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G+G R G+ +PKQYLP++G+P+ +Y+    +    V  ++VV   +  D+ +    E     L     G  R  SV SG   L +V    + V +HD+ARP V   D++++L         A+L VP + T+K A S+  +  T  R+ LW   TPQ+
Sbjct:    8 VIPAAGRGVRFGSPVPKQYLPVVGRPLIVYTLEALAAHPAVCGLMVVV--AEGDLAWSGWTELAGKPLLTCSGGVTRAASVLSGLLALPQVVHADDFVLVHDAARPNVALSDLERLLEAGCAHPVGAILAVPVRDTLKRAGSDGSIDGTEPRERLWRAFTPQL 168          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_XYLFM (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Xylella fastidiosa (strain M12) GN=ispD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.572e-13
Identity = 52/163 (31.90%), Postives = 84/163 (51.53%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDI-FEETKEKINVDLKFSLPGKERQDSVYSG---LQEVDFNSELVCIHDSARPLVLSKDVQKVL-MDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G+G R G+ +PKQYLP++G+P+ +Y+    +    V  ++VV   +  D+ +    E     L     G  R  SV SG   L +V    + V +HD+ARP V   D++++L         A+L VP + T+K A S+  +  T  R+ LW   TPQ+
Sbjct:    8 VIPAAGRGVRFGSPVPKQYLPVVGRPLIVYTLEALAAHPAVCGLMVVV--TEGDLAWSGWTEVAGKPLLTCSGGVTRAASVLSGLLALPQVVHADDFVLVHDAARPNVALSDLERLLEAGCAHPVGAILAVPVRDTLKRAGSDGSIDGTEPRERLWRAFTPQL 168          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_XYLF2 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Xylella fastidiosa (strain M23) GN=ispD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.572e-13
Identity = 52/163 (31.90%), Postives = 84/163 (51.53%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDI-FEETKEKINVDLKFSLPGKERQDSVYSG---LQEVDFNSELVCIHDSARPLVLSKDVQKVL-MDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G+G R G+ +PKQYLP++G+P+ +Y+    +    V  ++VV   +  D+ +    E     L     G  R  SV SG   L +V    + V +HD+ARP V   D++++L         A+L VP + T+K A S+  +  T  R+ LW   TPQ+
Sbjct:    8 VIPAAGRGVRFGSPVPKQYLPVVGRPLIVYTLEALAAHPAVCGLMVVV--AEGDLAWSGWTELAGKPLLTCSGGVTRAASVLSGLLALPQVVHADDFVLVHDAARPNVALSDLERLLEAGCAHPVGAILAVPVRDTLKRAGSDGSIDGTEPRERLWRAFTPQL 168          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_STRA5 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Streptococcus agalactiae serotype V GN=ispD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.572e-13
Identity = 48/163 (29.45%), Postives = 80/163 (49.08%), Query Frame = 1
Query:  205 ILLAGGKGKRMGAN-MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD-LKFSLPGKER-QDSVYSGLQEVD---FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ AGG G+RM     PKQ+L + G+PI +++   F     +  +VVVC   + D      E+ N+  +K  + G E  Q S++ GL+  +    +  +V IHD  RPL+  + +   +      G+AV  V AK T+   N  S +   +DR   +  + PQ
Sbjct:    6 VIFAGGVGRRMNTKGKPKQFLEVHGKPIIVHTIDIFQNTEAIDAVVVVCVSDWLDYMNNLVERFNLTKVKAVVAGGETGQMSIFKGLEAAEQLATDDAVVLIHDGVRPLINEEVINANIQSVKETGSAVTSVRAKETVVLVNDSSKISEVVDRTRSFIAKAPQ 168          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_STRA1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Streptococcus agalactiae serotype Ia GN=ispD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.572e-13
Identity = 48/163 (29.45%), Postives = 80/163 (49.08%), Query Frame = 1
Query:  205 ILLAGGKGKRMGAN-MPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD-LKFSLPGKER-QDSVYSGLQEVD---FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ AGG G+RM     PKQ+L + G+PI +++   F     +  +VVVC   + D      E+ N+  +K  + G E  Q S++ GL+  +    +  +V IHD  RPL+  + +   +      G+AV  V AK T+   N  S +   +DR   +  + PQ
Sbjct:    5 VIFAGGVGRRMNTKGKPKQFLEVHGKPIIVHTIDIFQNTEAIDAVVVVCVSDWLDYMNNLVERFNLTKVKAVVAGGETGQMSIFKGLEAAEQLATDDAVVLIHDGVRPLINEEVINANIQSVKETGSAVTSVRAKETVVLVNDSSKISEVVDRTRSFIAKAPQ 167          
The following BLAST results are available for this feature:
BLAST of FC931379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ISPD_HAEDU2.680e-1334.382-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_SYNJA3.500e-1333.332-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_PSEPW3.500e-1332.932-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_DEHSC3.500e-1332.502-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_DEHSB3.500e-1332.502-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_XYLFT4.572e-1331.902-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_XYLFM4.572e-1331.902-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_XYLF24.572e-1331.902-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_STRA54.572e-1329.452-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_STRA14.572e-1329.452-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]

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Properties
Property NameValue
Genbank descriptionC34104E04EF PostHarvP1 Citrus clementina cDNA clone C34104E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931379 ID=FC931379; Name=FC931379; organism=Citrus clementina; type=EST; length=750bp
CTGCTTCAGCTGAACCTTGCTCTGTCTTCTTCAACTTCTTCTCTCTCACT
GTTCCCAGACAACCACCAAACTTTCTCCAGAACTGGTCATAAAAATCAGT
TCTTTGGCTTGACAAGGAAGGCCAGGCTTGCAACATCCAGGATTAGATGT
TCTGCTAAAGTTGATAATGGTTCTGTCGTTGTTAAAGATAAGAGTGTATC
AGTTATTCTTTTGGCTGGAGGGAAGGGCAAAAGAATGGGTGCGAACATGC
CAAAGCAGTATCTACCACTTTTGGGTCAACCCATTGCATTGTATAGTTTC
TACACTTTCTCACGCATGGTTGAAGTGAAGGAAATTGTGGTAGTTTGTGA
TCCATCTTACAGTGACATCTTTGAAGAAACCAAAGAGAAGATCAATGTAG
ACCTTAAATTCTCACTTCCGGGGAAGGAGAGGCAAGATTCTGTTTACAGC
GGACTTCAGGAAGTTGATTTTAACTCTGAGCTCGTGTGCATCCATGATTC
TGCTAGACCTTTGGTATTATCTAAAGATGTGCAAAAGGTCCTTATGGATG
CTTTGCGGGTCGGAGCAGCTGTACTTGGTGTTCCTGCCAAAGCTACAATT
AAAGAGGCAAATAGCGAATCTTTTGTGGTTAGAACCCTGGACCGCAAAAC
TCTTTGGGAAATGCAGACCCCTCAGGTGATCAAGCCTGGCTTGCTTAAAA
AGGGTTTGAGCTTGTCATAGGGAAGGTCTTGAAGTACTGATGATGTATCT
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