FC931379

Overview
NameFC931379
Unique NameFC931379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_FUSNN (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Fusobacterium nucleatum subsp. nucleatum GN=ispD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.330e-12
Identity = 49/163 (30.06%), Postives = 84/163 (51.53%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL---PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQ---KVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            IL A G+GKRM  N PKQ+L   G+P+   S         + +I+++ +    +   +  +  N+  K       G ERQ S+Y+ ++++  ++++V I D+ARP +  K ++   K+L D      A++GV  K TIK  +    V+ T +R  L  + TPQ
Sbjct:   15 ILAAAGQGKRMNLNSPKQFLDYRGEPLFYSSLKLAFENKNINDIIIITNKENLNFMVKYCQNKNLFSKVKYIVEGGSERQYSIYNAIKKIK-DTDIVIIQDAARPFLKDKYIEESLKILND--DCDGAIIGVKCKDTIKIIDENGIVLETPNRDNLIMVHTPQ 174          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_COREF (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Corynebacterium efficiens GN=ispD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.330e-12
Identity = 54/165 (32.73%), Postives = 80/165 (48.48%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET-------KEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVL-MDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            +L A G+G R+G  +PK ++ L G+ +   S         V E++++  P   D   E         +   V ++    G ER DSV++GLQ +D +  +V IHDSAR L     + +V  M A    A +  VP   TIK  +  S VV T +R  L  +QTPQ
Sbjct:    9 LLAAAGRGTRLGGPIPKAFVTLRGRSLVERSLRAMLTSEVVDEVIILVSPDMEDYARELLTRRGLLNDPEGVRVRLVHGGGERADSVWAGLQAIDHDDAIVLIHDSARALTPPGMIARVARMVADGAPAVIPVVPVADTIKRVDG-STVVDTPNRADLRAVQTPQ 172          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ACTSZ (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=ispD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.330e-12
Identity = 50/160 (31.25%), Postives = 84/160 (52.50%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC--DPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSEL-VCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G RM A+ PKQYL + G+ I  ++         VK +++    D  Y       ++     ++  + G+ R +SV +GL+ ++  + + V +HD+ARP +  +D+ K+L      GA +L +PA  TIK A+    + RT DR  +W  QTPQ
Sbjct:   11 VVPAAGVGSRMQADKPKQYLHIHGKTILEHTVGALLTYPPVKYVILAIAEDDPYIRRLPLVRD---ARIQIVVGGETRAESVLNGLKAIEHPARVQVMVHDAARPCITHEDLDKLLRINDENGA-ILALPAVDTIKRADKNQQISRTEDRNFIWLAQTPQ 166          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_MESSB (Bifunctional enzyme ispD/ispF OS=Mesorhizobium sp. (strain BNC1) GN=ispDF PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.330e-12
Identity = 43/160 (26.88%), Postives = 79/160 (49.38%), Query Frame = 1
Query:  205 ILLAGGKGKRMGA--NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            +++A G+G+R G   N PKQY  + G+P+  ++    ++   V  I V   P  S +F + +E ++ D++    G  RQ+S    L  + +   ++V IHD  RP +    +++V+        A+  +P   T+K +     +  T+ R  L+  QTPQ
Sbjct:   17 VVVAAGRGERAGQAQNGPKQYRLIGGKPVIRHTLEVLAKSKRVGTIAVAVHPEDSSLFNQAREGLDGDIRAVHGGASRQESTRLALAALEEVKPDIVLIHDGVRPFIDEALIERVIEAVGEDSGALPALPVSDTLKRSGVNGIITGTVPRDGLFAAQTPQ 176          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_VIBSL (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Vibrio splendidus (strain LGP32) GN=ispD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.737e-12
Identity = 55/165 (33.33%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN--SELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G G RM A+ PKQYL + G+ I  ++        +V +IVV     DP Y ++      K+   ++ S  G ER DSV S L  +     S+ V +HD+ARP V   D+ K++  A+   VG A+L  P + T+K   ++  +  T++R  LW   TPQ+
Sbjct:   11 VVPAAGVGSRMKADRPKQYLKINGKTILEHTIEKLLSHPQVSQIVVAISDDDPYYPELALNQNPKV---VRVS-GGSERADSVLSALNCIAEQQLSDWVMVHDAARPCVQLSDIDKLISGAMSHDVG-AILAAPVRDTMKR-GAQGQIEHTVERADLWHALTPQM 169          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_NITMU (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=ispD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.737e-12
Identity = 51/166 (30.72%), Postives = 79/166 (47.59%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLK-FSLPGKERQDSVYSGLQEVDFNSEL-----VCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G G RMG  MPKQYL L G+P+  ++  T      +  + VV  P   +       + +  L      G  R ++V +GL+     + +     V +HD+ARP +  K + K LMD L       +L VP   T+K ++      RT  R+ LW+ QTPQ+
Sbjct:    7 LIPAAGSGSRMGDRMPKQYLTLAGKPMIHHALATLCNSPRLSRVFVVLSPGDVEWARHDWSEFSSKLSMLECGGATRAETVLNGLKAAQEGTAIEDDDWVLVHDAARPCLGGKLLDK-LMDELEEDEVGGLLAVPVADTLKRSDPTCRAERTEPREGLWQAQTPQM 171          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_NITEU (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Nitrosomonas europaea GN=ispD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.737e-12
Identity = 53/169 (31.36%), Postives = 86/169 (50.89%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSD----IFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSEL-----VCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G G RMG ++PKQY PL  +P+  ++  T      +  + VV  P  ++     + E   KI V   F   G  R +SV +GL+ +   + +     + +HD+ARP  LS+ + + L+D L       +L VP   T+K A+    V+ T  R+ LW+ QTPQ+
Sbjct:    7 LIPAAGSGSRMGEDIPKQYRPLASKPMIYHALRTLCSAERIGMVCVVLAPDDTEWARHDWSEFAGKIRV---FGCGGATRAESVTNGLKALRAENHVQDQDWILVHDAARP-GLSRALVERLLDQLAQDEIGGLLAVPLADTLKRADDTGRVMCTEPRERLWQAQTPQM 171          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ECO27 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ispD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.737e-12
Identity = 50/160 (31.25%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEANS-ESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G+ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A + ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGEERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAETGKNAIAHTVDRNGLWHALTPQ 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ACAM1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Acaryochloris marina (strain MBIC 11017) GN=ispD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.737e-12
Identity = 48/161 (29.81%), Postives = 79/161 (49.07%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC----DPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RMG++  K  L L G+P+  ++       + +  I ++     +P++  +       +N  + F   G+ RQ+SVY+GLQ +   +E V IHD AR L   + + +      +    V  VP K TIK  ++   +  T DR  LW  QTPQ
Sbjct:    4 LIPAAGMGRRMGSDRNKLRLMLHGKPLLAWTLLAAESSISISWIGIIGQLEDEPTWETLLNTLS--LNKPVVFIEGGQTRQESVYNGLQALPPEAEQVLIHDGARCLATPELLDRCAHALHKYQGFVAAVPVKDTIKVVDTTHQIQGTPDRSQLWAAQTPQ 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ECO7I (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.269e-12
Identity = 50/160 (31.25%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G+ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKHVVIAISPGDSR-FAQLPLANHPQITVVDGGEERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167          
The following BLAST results are available for this feature:
BLAST of FC931379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ISPD_FUSNN1.330e-1230.062-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_COREF1.330e-1232.732-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ACTSZ1.330e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPDF_MESSB1.330e-1226.88Bifunctional enzyme ispD/ispF OS=Mesorhizobium sp.... [more]
ISPD_VIBSL1.737e-1233.332-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_NITMU1.737e-1230.722-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_NITEU1.737e-1231.362-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ECO271.737e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ACAM11.737e-1229.812-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ECO7I2.269e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]

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Properties
Property NameValue
Genbank descriptionC34104E04EF PostHarvP1 Citrus clementina cDNA clone C34104E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931379 ID=FC931379; Name=FC931379; organism=Citrus clementina; type=EST; length=750bp
CTGCTTCAGCTGAACCTTGCTCTGTCTTCTTCAACTTCTTCTCTCTCACT
GTTCCCAGACAACCACCAAACTTTCTCCAGAACTGGTCATAAAAATCAGT
TCTTTGGCTTGACAAGGAAGGCCAGGCTTGCAACATCCAGGATTAGATGT
TCTGCTAAAGTTGATAATGGTTCTGTCGTTGTTAAAGATAAGAGTGTATC
AGTTATTCTTTTGGCTGGAGGGAAGGGCAAAAGAATGGGTGCGAACATGC
CAAAGCAGTATCTACCACTTTTGGGTCAACCCATTGCATTGTATAGTTTC
TACACTTTCTCACGCATGGTTGAAGTGAAGGAAATTGTGGTAGTTTGTGA
TCCATCTTACAGTGACATCTTTGAAGAAACCAAAGAGAAGATCAATGTAG
ACCTTAAATTCTCACTTCCGGGGAAGGAGAGGCAAGATTCTGTTTACAGC
GGACTTCAGGAAGTTGATTTTAACTCTGAGCTCGTGTGCATCCATGATTC
TGCTAGACCTTTGGTATTATCTAAAGATGTGCAAAAGGTCCTTATGGATG
CTTTGCGGGTCGGAGCAGCTGTACTTGGTGTTCCTGCCAAAGCTACAATT
AAAGAGGCAAATAGCGAATCTTTTGTGGTTAGAACCCTGGACCGCAAAAC
TCTTTGGGAAATGCAGACCCCTCAGGTGATCAAGCCTGGCTTGCTTAAAA
AGGGTTTGAGCTTGTCATAGGGAAGGTCTTGAAGTACTGATGATGTATCT
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