FC931379

Overview
NameFC931379
Unique NameFC931379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_AERHH (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.269e-12
Identity = 47/158 (29.75%), Postives = 77/158 (48.73%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            I+ A G G RMGA  PKQYL L G+ I  ++         + +++V   P +   F+      +  +     G ER  SV + L       E V +HD+ARP +   D+  ++  A+    A+LG   + T+K ++    ++ T+DR+ LW   TPQ+
Sbjct:   11 IVPAAGIGSRMGAECPKQYLQLAGRTILEHTLTRLLSHPAIAQVIVALAP-HDRWFDTLAVAADPRILRVEGGAERAFSVLNALHVAA--GEWVLVHDAARPCLTHGDLDALIATAMACDGAILGSRVRDTMKRSDGAGNILATVDREQLWHALTPQM 165          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ESCF3 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.963e-12
Identity = 49/160 (30.63%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  + I  +S +       V  +++V  P  S  F +     +  +     G+ER DSV +G++ V  ++E V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGYGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVIIVISPGDSR-FAQLPLANHPQITVVDGGEERADSVLAGIKAVG-DAEWVLVHDAARPCLHQDDLARLLTLSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRSGLWHALTPQ 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_DECAR (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Dechloromonas aromatica (strain RCB) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.963e-12
Identity = 55/173 (31.79%), Postives = 83/173 (47.98%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPS------YSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQE---VDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAA------VLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            I+ A G G R GA  PKQYL LLG+P+  ++    +   +++ + VV  P       Y   + E   K+         G  R +SV +GL+    V  + + V +HD+ARP      +   ++DAL    A      +L VP   T+K A++E  V  T  R  LW+ QTPQ+
Sbjct:    7 IVPAAGSGSRFGAEKPKQYLDLLGRPLIFHTLAALTASPDIERVWVVLAPDDPWWPRYD--WSELGSKLET---VRCGGATRAESVSNGLRAAAMVAADDDWVLVHDAARPC-----LSAAMLDALFAELASDPVGGILAVPVADTLKRADAEQRVGATEPRDGLWQAQTPQM 169          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ACIC5 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.963e-12
Identity = 50/171 (29.24%), Postives = 88/171 (51.46%), Query Frame = 1
Query:  205 ILLAGGKGKRMGA-----NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV-----DLKFSLPGKERQDSVYSGLQEVDFN-SELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEAN---SESFVVRTLDRKTLWEMQTPQ 675
            IL A G G RM A     + PKQ+L L G P+ +++   F+ +  V  ++V   P+     E  + ++N       ++    G  RQ SV   L  V+ + S++V +HD+ RPL+    + + +    + GAA++G+PA  TIK+     + + +  T+ R+ + + QTPQ
Sbjct:    6 ILPAAGLGTRMAAGSHTPHQPKQFLELEGVPVLIHTLRAFAAVPAVSAMIVAVRPNE---IERVQAQVNEYGFQDKVRVVAGGDSRQQSVSRALATVECDASDIVLVHDAVRPLIEPAVIARTIEAVEKSGAAIVGLPAVDTIKQVERTAAGAIITATIPREYIVQAQTPQ 173          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SYNY3 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 46/159 (28.93%), Postives = 76/159 (47.80%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD--LKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G GKRMG+   K  L +LGQP+  ++         ++ I ++  P     FE     ++    ++  + G  RQ SV++G+Q +   ++ V IHD AR L       +           +  +P K TIK  N++ ++  T DR+ LW  QTPQ
Sbjct:    4 LIPAAGSGKRMGSGHNKLLLNVLGQPLLSWTVQAALASQSIEWIGIMGQPYDFPAFEALLTPLHSPKPVQLIVGGDTRQQSVFNGIQALPPGAKFVLIHDGARCLATPDLFDRCTEALQHCQGLIAAMPVKDTIKIVNADGWITDTPDRQGLWGAQTPQ 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SHISS (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Shigella sonnei (strain Ss046) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SHIDS (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SHIBS (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SHIB3 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_PSESM (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Pseudomonas syringae pv. tomato GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 57/168 (33.93%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVV---VCDPSYSDIFEETKEKIN-VDLKFSLPGKERQDSVYSGLQEVDF----NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G G RM A+ PKQYL L G  I  +S   F     +K +V+   V DP ++ +      +I  VD      G+ER  SV + L  +      + + V +HD+ARP +   D+  +L       VG  +L VPA+ T+K A+S+  VV T+DR  +W+  TPQ+
Sbjct:   11 VIPAAGIGARMAADRPKQYLQLGGLTILEHSLLCFLDHPRLKGLVISLAVDDPYWAALPCAHDSRIQRVD-----GGRERSGSVLNALLHLHAQGASDDDWVLVHDAARPNLARSDLDNLLGQLADDPVGG-LLAVPARDTLKRADSDGRVVETVDRSLIWQAFTPQM 172          
The following BLAST results are available for this feature:
BLAST of FC931379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ISPD_AERHH2.269e-1229.752-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ESCF32.963e-1230.632-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_DECAR2.963e-1231.792-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ACIC52.963e-1229.242-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_SYNY33.870e-1228.932-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_SHISS3.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_SHIDS3.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_SHIBS3.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_SHIB33.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_PSESM3.870e-1233.932-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34104E04EF PostHarvP1 Citrus clementina cDNA clone C34104E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931379 ID=FC931379; Name=FC931379; organism=Citrus clementina; type=EST; length=750bp
CTGCTTCAGCTGAACCTTGCTCTGTCTTCTTCAACTTCTTCTCTCTCACT
GTTCCCAGACAACCACCAAACTTTCTCCAGAACTGGTCATAAAAATCAGT
TCTTTGGCTTGACAAGGAAGGCCAGGCTTGCAACATCCAGGATTAGATGT
TCTGCTAAAGTTGATAATGGTTCTGTCGTTGTTAAAGATAAGAGTGTATC
AGTTATTCTTTTGGCTGGAGGGAAGGGCAAAAGAATGGGTGCGAACATGC
CAAAGCAGTATCTACCACTTTTGGGTCAACCCATTGCATTGTATAGTTTC
TACACTTTCTCACGCATGGTTGAAGTGAAGGAAATTGTGGTAGTTTGTGA
TCCATCTTACAGTGACATCTTTGAAGAAACCAAAGAGAAGATCAATGTAG
ACCTTAAATTCTCACTTCCGGGGAAGGAGAGGCAAGATTCTGTTTACAGC
GGACTTCAGGAAGTTGATTTTAACTCTGAGCTCGTGTGCATCCATGATTC
TGCTAGACCTTTGGTATTATCTAAAGATGTGCAAAAGGTCCTTATGGATG
CTTTGCGGGTCGGAGCAGCTGTACTTGGTGTTCCTGCCAAAGCTACAATT
AAAGAGGCAAATAGCGAATCTTTTGTGGTTAGAACCCTGGACCGCAAAAC
TCTTTGGGAAATGCAGACCCCTCAGGTGATCAAGCCTGGCTTGCTTAAAA
AGGGTTTGAGCTTGTCATAGGGAAGGTCTTGAAGTACTGATGATGTATCT
back to top