FC931379

Overview
NameFC931379
Unique NameFC931379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_PELPB (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 54/169 (31.95%), Postives = 83/169 (49.11%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANM--PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD-LKFSLPG-KERQDSVYSGLQEVD-------FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK-EANSESFVVRTLDRKTLWEMQTPQ 675
            I+ A G GKRM       KQ L + G P+  ++   F     VK I +        I EE         LK  + G KERQDSVY+ ++ ++        ++E++ +HD ARP + S+++ ++   +++ GA V     K TIK    +  F   TLDR  L ++QTPQ
Sbjct:    6 IIAASGIGKRMQLREGESKQLLEVGGFPVIYHTLKAFQMASSVKAIYIATRLENRSILEELAAASGFSKLKAIIEGGKERQDSVYNCIRAIEEEKRLTGASAEIILVHDGARPFIRSEEIDEIARLSMQYGACVPANRPKDTIKYVGENPEFFGETLDRSKLLQVQTPQ 174          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ECOUT (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G+ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPRITVVDGGEERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ECOSE (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia coli (strain SE11) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ECOLU (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLTLSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ECOLI (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia coli (strain K12) GN=ispD PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ECOLC (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ECOL6 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia coli O6 GN=ispD PE=3 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G+ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPRITVVDGGEERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ECOL5 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G+ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPRITVVDGGEERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ECOK1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia coli O1:K1 / APEC GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G+ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPRITVVDGGEERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ECOHS (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167          
The following BLAST results are available for this feature:
BLAST of FC931379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ISPD_PELPB3.870e-1231.952-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ECOUT3.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ECOSE3.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ECOLU3.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ECOLI3.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ECOLC3.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ECOL63.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ECOL53.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ECOK13.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ECOHS3.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34104E04EF PostHarvP1 Citrus clementina cDNA clone C34104E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931379 ID=FC931379; Name=FC931379; organism=Citrus clementina; type=EST; length=750bp
CTGCTTCAGCTGAACCTTGCTCTGTCTTCTTCAACTTCTTCTCTCTCACT
GTTCCCAGACAACCACCAAACTTTCTCCAGAACTGGTCATAAAAATCAGT
TCTTTGGCTTGACAAGGAAGGCCAGGCTTGCAACATCCAGGATTAGATGT
TCTGCTAAAGTTGATAATGGTTCTGTCGTTGTTAAAGATAAGAGTGTATC
AGTTATTCTTTTGGCTGGAGGGAAGGGCAAAAGAATGGGTGCGAACATGC
CAAAGCAGTATCTACCACTTTTGGGTCAACCCATTGCATTGTATAGTTTC
TACACTTTCTCACGCATGGTTGAAGTGAAGGAAATTGTGGTAGTTTGTGA
TCCATCTTACAGTGACATCTTTGAAGAAACCAAAGAGAAGATCAATGTAG
ACCTTAAATTCTCACTTCCGGGGAAGGAGAGGCAAGATTCTGTTTACAGC
GGACTTCAGGAAGTTGATTTTAACTCTGAGCTCGTGTGCATCCATGATTC
TGCTAGACCTTTGGTATTATCTAAAGATGTGCAAAAGGTCCTTATGGATG
CTTTGCGGGTCGGAGCAGCTGTACTTGGTGTTCCTGCCAAAGCTACAATT
AAAGAGGCAAATAGCGAATCTTTTGTGGTTAGAACCCTGGACCGCAAAAC
TCTTTGGGAAATGCAGACCCCTCAGGTGATCAAGCCTGGCTTGCTTAAAA
AGGGTTTGAGCTTGTCATAGGGAAGGTCTTGAAGTACTGATGATGTATCT
back to top