FC931379

Overview
NameFC931379
Unique NameFC931379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ECODH (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 1 
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167
[Close]
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ECOBW (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia coli (strain K12 / BW2952) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 1 
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167
[Close]
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ECO8A (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia coli O8 (strain IAI1) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 1 
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167
[Close]
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ECO81 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia coli O81 (strain ED1a) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 81/160 (50.62%), Query Frame = 1 
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G+ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPRITVVDGGEERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167
[Close]
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ECO55 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 1 
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167
[Close]
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ECO45 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 81/160 (50.62%), Query Frame = 1 
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G+ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPRITVVDGGEERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167
[Close]
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ECO24 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 1 
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  Q I  +S +       VK +V+   P  S  F +     +  +     G ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T+DR  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR-FAQLPLANHPQITVVDGGDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ 167
[Close]
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_COLP3 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 50/168 (29.76%), Postives = 83/168 (49.40%), Query Frame = 1 
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNS-ELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIKEA--------NSESFVVRTLDRKTLWEMQTPQV 678
            I+ A G GKRM AN PKQYL +  + I  ++         + +++V    +    F E++   + D+     G ER +SV +GL+ VD +    V +HD+ARP V  +D+ K++   LR     +L  P + T+K             + +  T++R+ LW   TPQ+
Sbjct:   10 IVPAAGVGKRMQANCPKQYLRINNETILSHTVMRLLSHPLISQVIVALG-TEDQYFAESELAHHKDIIRVNGGTERVNSVLNGLKAVDSDKYPWVLVHDAARPCVSHQDIDKLITRCLRKDYGGILATPVRDTMKRGVLIKDSAKGDNTIIESTVEREQLWHALTPQM 176
[Close]
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_CHLT3 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=ispD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 51/171 (29.82%), Postives = 83/171 (48.54%), Query Frame = 1 
Query:  205 ILLAGGKGKRMG--ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV-DLKFSLP-GKERQDSVYSGLQEV--------DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK--EANSESFVVRTLDRKTLWEMQTPQ 675
            I+ A G GKRM   +   KQYL L   P+  Y+   F +   V+ I V   PS+    ++   +     +KF +  GKERQDS+++ ++++            +++ IHD  RP +   ++ ++   +   GA V     K TIK  + +   F   TLDR  L ++QTPQ
Sbjct:    6 IIAASGVGKRMKLPSGKTKQYLKLGVYPVIYYALSAFQQASSVEAIFVATLPSHIAYLQKMARRYGFHKVKFVIEGGKERQDSIFNCVEKIREVYGDDGALQDKVILIHDGVRPFIQPNEIDEIAELSKSFGACVPATKPKDTIKYIDGDDNRFFGETLDRSKLLQVQTPQ 176
[Close]
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD2_LISMF (Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=ispD2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 45/164 (27.44%), Postives = 89/164 (54.27%), Query Frame = 1 
Query:  208 LLAGGKGKRMG-ANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVD-----FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            +LAGGKG RMG  +MPKQ+LPL G+PI +++   F       +I++     + +  E+  +K   D +  +   G++R +++ +G++ V+      + +++  HD+ RP +  + +++ +  AL  GA    + A  TI E+++   +     R  +++ QTPQ
Sbjct:    6 ILAGGKGTRMGNVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVVIEGGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIEALDTIVESSNHEVITDIPVRDHMYQGQTPQ 169
The following BLAST results are available for this feature:
BLAST of FC931379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ISPD_ECODH3.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ECOBW3.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ECO8A3.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ECO813.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ECO553.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ECO453.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ECO243.870e-1231.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_COLP33.870e-1229.762-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_CHLT33.870e-1229.822-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD2_LISMF3.870e-1227.44Putative 2-C-methyl-D-erythritol 4-phosphate cytid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34104E04EF PostHarvP1 Citrus clementina cDNA clone C34104E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931379 ID=FC931379; Name=FC931379; organism=Citrus clementina; type=EST; length=750bp
CTGCTTCAGCTGAACCTTGCTCTGTCTTCTTCAACTTCTTCTCTCTCACT
GTTCCCAGACAACCACCAAACTTTCTCCAGAACTGGTCATAAAAATCAGT
TCTTTGGCTTGACAAGGAAGGCCAGGCTTGCAACATCCAGGATTAGATGT
TCTGCTAAAGTTGATAATGGTTCTGTCGTTGTTAAAGATAAGAGTGTATC
AGTTATTCTTTTGGCTGGAGGGAAGGGCAAAAGAATGGGTGCGAACATGC
CAAAGCAGTATCTACCACTTTTGGGTCAACCCATTGCATTGTATAGTTTC
TACACTTTCTCACGCATGGTTGAAGTGAAGGAAATTGTGGTAGTTTGTGA
TCCATCTTACAGTGACATCTTTGAAGAAACCAAAGAGAAGATCAATGTAG
ACCTTAAATTCTCACTTCCGGGGAAGGAGAGGCAAGATTCTGTTTACAGC
GGACTTCAGGAAGTTGATTTTAACTCTGAGCTCGTGTGCATCCATGATTC
TGCTAGACCTTTGGTATTATCTAAAGATGTGCAAAAGGTCCTTATGGATG
CTTTGCGGGTCGGAGCAGCTGTACTTGGTGTTCCTGCCAAAGCTACAATT
AAAGAGGCAAATAGCGAATCTTTTGTGGTTAGAACCCTGGACCGCAAAAC
TCTTTGGGAAATGCAGACCCCTCAGGTGATCAAGCCTGGCTTGCTTAAAA
AGGGTTTGAGCTTGTCATAGGGAAGGTCTTGAAGTACTGATGATGTATCT
back to top