FC931379

Overview
NameFC931379
Unique NameFC931379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_PSEFS (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Pseudomonas fluorescens (strain SBW25) GN=ispD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.055e-12
Identity = 53/167 (31.74%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF----NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G G RM A+ PKQYL L G+ I  +S   F     +K +VV     DP +  +      +I    + +  G ER  SV + L +++     + + V +HD+ARP +   D+ K+L +     VG  +L VPA+ T+K  +    V+ T+DR  +W+  TPQ+
Sbjct:   11 VIPAAGVGARMAADRPKQYLQLGGRTILEHSLGCFLDHPSLKGLVVSLAADDPYWPSLACAADPRI----QRAEGGSERSGSVLNALLQLNALGAGDDDWVLVHDAARPNLSRDDLDKLLAELADDPVGG-LLAVPARDTLKRVDKYGRVIETVDRSLIWQAYTPQM 172          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_YERPY (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=ispD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.601e-12
Identity = 49/161 (30.43%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM--DALRVGAAVLGVPAKATIKEANSE-SFVVRTLDRKTLWEMQTPQV 678
            +L A G G RM A+ PKQYL + G+ I  ++ ++      ++ ++VV  P  +  F       +  +     G +R +SV +GLQ     +E V +HD+ARP +   D+ ++L   +  +VG  +L  P + T+K A      +  T+DR+ LW   TPQ+
Sbjct:   14 VLPAAGIGSRMLADCPKQYLTVGGKTIIEHAIFSLLHHPRIQRVIVVIHPQDTQ-FSRLSVAQDPRISTVYGGDQRANSVMAGLQLAG-QAEWVLVHDAARPCLHLDDLSRLLSITECSQVGG-ILAAPVRDTMKRAEPGIQAIAHTVDRQDLWHALTPQL 171          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_YERPS (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Yersinia pseudotuberculosis GN=ispD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.601e-12
Identity = 49/161 (30.43%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM--DALRVGAAVLGVPAKATIKEANSE-SFVVRTLDRKTLWEMQTPQV 678
            +L A G G RM A+ PKQYL + G+ I  ++ ++      ++ ++VV  P  +  F       +  +     G +R +SV +GLQ     +E V +HD+ARP +   D+ ++L   +  +VG  +L  P + T+K A      +  T+DR+ LW   TPQ+
Sbjct:   14 VLPAAGIGSRMLADCPKQYLTVGGKTIIEHAIFSLLHHPRIQRVIVVIHPQDTQ-FSRLSVAQDPRISTVYGGDQRANSVMAGLQLAG-QAEWVLVHDAARPCLHLDDLSRLLSITECSQVGG-ILAAPVRDTMKRAEPGIQAIAHTVDRQDLWHALTPQL 171          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_YERPB (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ispD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.601e-12
Identity = 49/161 (30.43%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM--DALRVGAAVLGVPAKATIKEANSE-SFVVRTLDRKTLWEMQTPQV 678
            +L A G G RM A+ PKQYL + G+ I  ++ ++      ++ ++VV  P  +  F       +  +     G +R +SV +GLQ     +E V +HD+ARP +   D+ ++L   +  +VG  +L  P + T+K A      +  T+DR+ LW   TPQ+
Sbjct:   14 VLPAAGIGSRMLADCPKQYLTVGGKTIIEHAIFSLLHHPRIQRVIVVIHPQDTQ-FSRLSVAQDPRISTVYGGDQRANSVMAGLQLAG-QAEWVLVHDAARPCLHLDDLSRLLSITECSQVGG-ILAAPVRDTMKRAEPGIQAIAHTVDRQDLWHALTPQL 171          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_YERP3 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ispD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.601e-12
Identity = 49/161 (30.43%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM--DALRVGAAVLGVPAKATIKEANSE-SFVVRTLDRKTLWEMQTPQV 678
            +L A G G RM A+ PKQYL + G+ I  ++ ++      ++ ++VV  P  +  F       +  +     G +R +SV +GLQ     +E V +HD+ARP +   D+ ++L   +  +VG  +L  P + T+K A      +  T+DR+ LW   TPQ+
Sbjct:   14 VLPAAGIGSRMLADCPKQYLTVGGKTIIEHAIFSLLHHPRIQRVIVVIHPQDTQ-FSRLSVAQDPRISTVYGGDQRANSVMAGLQLAG-QAEWVLVHDAARPCLHLDDLSRLLSITECSQVGG-ILAAPVRDTMKRAEPGIQAIAHTVDRQDLWHALTPQL 171          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SYNPX (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Synechococcus sp. (strain WH8102) GN=ispD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.601e-12
Identity = 47/157 (29.94%), Postives = 70/157 (44.59%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RMGA+  K  LPL G+P+  ++         ++ I VV      +   +     N  + +   G  RQ+SV  GL  +   +E V IHD AR L       +  M      A +   P   TIK  +++  +  T DR  LW  QTPQ
Sbjct:    4 LIAAAGSGRRMGADRNKLLLPLAGKPVIAWTLKAALAAEHIQWIGVVGQEIDREPILDLVRDANKPVTWIQGGSTRQESVLRGLAGLPEAAEQVLIHDGARCLAEPALFDRCAMALASGQALIAATPVTDTIKRVDADGVITDTPDRSELWAAQTPQ 160          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ENTS8 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ispD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.601e-12
Identity = 46/161 (28.57%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLM--DALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQV 678
            ++ A G G RM    PKQYL +  Q I  ++     +   +  +++   P+    F       + D++    G +R DSV +GLQ    ++    +HD+ARP + ++D++++L   +  +VG  +L  PA  T+K A   +  +  T+DR+ LW   TPQ+
Sbjct:   11 VVPAAGIGSRMQTECPKQYLTIGNQTILEHAVAPLLQHPRISRVIIAISPA-DTAFARLPLAAHPDIQVVRGGAQRADSVLAGLQAAG-DARWALVHDAARPCLSAQDLERLLALTETSQVGG-ILAAPACDTMKRAEPGKPAIAHTVDRENLWHALTPQL 168          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_PELUB (Bifunctional enzyme ispD/ispF OS=Pelagibacter ubique GN=ispDF PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.601e-12
Identity = 50/160 (31.25%), Postives = 89/160 (55.62%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV-DLKFSLPGKERQDSVYSGLQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVL-GVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I+LAGG+ KR  +N PK Y    G+P+ L+S        +  +IV+V +  + +      +K+N+ +++    GK R +S Y+ L+ + + N + V IHD+ARP    K + K LM+ L++   V+  +    T+K+  S +  V+ L R+ ++ +QTPQ
Sbjct:    6 IILAGGESKRFNSNTPKPYTNYKGKPLLLHSIDKAKVFNKFNKIVLVVNKKHKNFI----KKLNIKNIRIITGGKTRAESAYNALKSIKENNFKNVIIHDAARPNFSLKLLNK-LMNELKLNDCVIPAIQTADTVKQKISNN--VKNLKRENIYLIQTPQ 158          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_WIGBR (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Wigglesworthia glossinidia brevipalpis GN=ispD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.622e-12
Identity = 51/162 (31.48%), Postives = 83/162 (51.23%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVL-MDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            I  A G GKRMG   PKQY+ +  + I  +S   F   + VK+I++     D  ++ +     +KIN+     + GK R +SV S L+ V    + V +HD+ RP +   D+ K+L +  +    A+L  P   T+K++   +F+  T+ R  LW   TPQ+
Sbjct:   10 IFPAAGIGKRMGYKYPKQYIKIKNKTILEHSISLFIDKIYVKKILIAINKKDYWFNKLSILKNKKINI----VIGGKSRTESVISALKFVS-KVDWVLVHDAVRPCLHKNDLNKLLKVINISPFGAILAAPIYDTVKKSYG-NFISHTIKRNKLWRALTPQL 165          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_RALSO (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Ralstonia solanacearum GN=ispD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.622e-12
Identity = 47/173 (27.17%), Postives = 81/173 (46.82%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPS-------YSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEV----DFNSELVCIHDSAR----PLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ + G G R G ++PKQY PL G+P+  ++   F     +  +VVV  P        +  +  +    + VD      G  R  SV +GL  +        + V +HD+AR    P ++++ V  V  D  +    +L +P   T+K A++   +  T+ R  LW+ QTPQ+
Sbjct:   14 LIPSAGTGTRAGGDLPKQYQPLAGRPMLWHTVQAFLASAAIDRVVVVTSPGAPALAARFPGLGFDAARLVEVD----CGGDSRHASVTNGLAALRGLGAHEDDWVLVHDAARPGLTPALIARLVGAVEADGGQAVGGILALPVADTLKRADAGQHIAETVPRGGLWQAQTPQM 182          
The following BLAST results are available for this feature:
BLAST of FC931379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ISPD_PSEFS5.055e-1231.742-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_YERPY6.601e-1230.432-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_YERPS6.601e-1230.432-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_YERPB6.601e-1230.432-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_YERP36.601e-1230.432-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_SYNPX6.601e-1229.942-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ENTS86.601e-1228.572-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPDF_PELUB6.601e-1231.25Bifunctional enzyme ispD/ispF OS=Pelagibacter ubiq... [more]
ISPD_WIGBR8.622e-1231.482-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_RALSO8.622e-1227.172-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]

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Properties
Property NameValue
Genbank descriptionC34104E04EF PostHarvP1 Citrus clementina cDNA clone C34104E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931379 ID=FC931379; Name=FC931379; organism=Citrus clementina; type=EST; length=750bp
CTGCTTCAGCTGAACCTTGCTCTGTCTTCTTCAACTTCTTCTCTCTCACT
GTTCCCAGACAACCACCAAACTTTCTCCAGAACTGGTCATAAAAATCAGT
TCTTTGGCTTGACAAGGAAGGCCAGGCTTGCAACATCCAGGATTAGATGT
TCTGCTAAAGTTGATAATGGTTCTGTCGTTGTTAAAGATAAGAGTGTATC
AGTTATTCTTTTGGCTGGAGGGAAGGGCAAAAGAATGGGTGCGAACATGC
CAAAGCAGTATCTACCACTTTTGGGTCAACCCATTGCATTGTATAGTTTC
TACACTTTCTCACGCATGGTTGAAGTGAAGGAAATTGTGGTAGTTTGTGA
TCCATCTTACAGTGACATCTTTGAAGAAACCAAAGAGAAGATCAATGTAG
ACCTTAAATTCTCACTTCCGGGGAAGGAGAGGCAAGATTCTGTTTACAGC
GGACTTCAGGAAGTTGATTTTAACTCTGAGCTCGTGTGCATCCATGATTC
TGCTAGACCTTTGGTATTATCTAAAGATGTGCAAAAGGTCCTTATGGATG
CTTTGCGGGTCGGAGCAGCTGTACTTGGTGTTCCTGCCAAAGCTACAATT
AAAGAGGCAAATAGCGAATCTTTTGTGGTTAGAACCCTGGACCGCAAAAC
TCTTTGGGAAATGCAGACCCCTCAGGTGATCAAGCCTGGCTTGCTTAAAA
AGGGTTTGAGCTTGTCATAGGGAAGGTCTTGAAGTACTGATGATGTATCT
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