FC931379

Overview
NameFC931379
Unique NameFC931379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_PSEF5 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ispD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.279e-11
Identity = 55/168 (32.74%), Postives = 86/168 (51.19%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVV---VCDPSYSDIFEETKEKIN-VDLKFSLPGKERQDSVYSGLQEVDF----NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G G RM A+ PKQYL L G+ I  +S   F     +K +VV   V DP +  +      +I  V+      G ER  SV + L  +      + + V +HD+ARP +   D+ K+L + +   VG  +L VPA+ T+K  +    V+ T+DR  +W+  TPQ+
Sbjct:   11 VIPAAGVGARMAADRPKQYLQLGGRTILEHSLGCFLDHPGLKGLVVSLAVDDPYWPALACAHDSRIQRVE-----GGAERSGSVLNALLHLHAQGAADDDWVLVHDAARPNLSRDDLDKLLGELMDDPVGG-LLAVPARDTLKRVDKHGRVLETVDRSLIWQAYTPQM 172          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_METCA (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Methylococcus capsulatus GN=ispD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.279e-11
Identity = 52/166 (31.33%), Postives = 88/166 (53.01%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEI--VVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEV---DFNSELVCIHDSARPLVLSKDVQKVLMDALR---VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G GKRMGA++PKQYL + G+P+     +T  R++ V+ +  V+V   +  + + E        +  +  G+ER DSV S L  +     + + V +HD+AR  V   DV++ LM+ L    VG  +L +P   T+K   + + +  + DR  +W   TPQ+
Sbjct:   10 VVPAAGVGKRMGADIPKQYLDVAGKPVLQ---HTLERLLSVRRVTAVMVALGANDEFWPELPCSREPRVLATTGGRERADSVLSALTALAGRAADGDWVLVHDAARLCVTRDDVER-LMETLEDDPVG-GILALPVTDTLKTVENGT-IQGSADRSRVWRALTPQM 169          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_RHILW (Bifunctional enzyme ispD/ispF OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=ispDF PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.279e-11
Identity = 50/163 (30.67%), Postives = 80/163 (49.08%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANM--PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI--NVDLKFSLPGKERQDSVYSGLQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVL-GVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            +++A G+G+R G++   PKQY  + G+P+ +++   F       EIVVV  P    +F      I     ++    G  RQ SV +GL+ + D     V IHD+ RP      + ++         AVL  +P   T+K A+S   V+ T+ R+ L+  QTPQ
Sbjct:   15 VIVAAGRGERAGSSKEGPKQYRMIGGKPVIVHTLENFMTWEPATEIVVVIHPDDEALFARALRHIISATPIETVHGGPTRQQSVLAGLRHLKDKRISHVLIHDAVRPFFDHVLLDRIAESLDNGAQAVLPAIPVTDTLKRADSAGTVLTTVSREHLYAAQTPQ 177          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SHESH (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Shewanella sediminis (strain HAW-EB3) GN=ispD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.588e-11
Identity = 48/159 (30.19%), Postives = 77/159 (48.43%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            I+ A G G RMGA +PKQYL +  + I   +        ++  +VV   P     F+      +  L   + G ER DSV + L  +  +   + +HD+ARP +   D+ K++    R    A+L  P + T+K  N++  V  T+ R+ LW   TPQ+
Sbjct:   11 IVPAAGIGSRMGAEIPKQYLLIDEKTILQLTLELLLTHPKIDCVVVALHPE-DQFFKGLPLSSHHKLHTVVGGSERADSVLACLNHLGGDCWAM-VHDAARPCLTHGDIDKLIASRQRFPQGAILAAPVRDTMKRGNADGTVKETVCRERLWHALTPQL 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SALPB (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ispD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.588e-11
Identity = 49/160 (30.63%), Postives = 79/160 (49.38%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVL--MDALRVGAAVLGVPAKATIKEANS-ESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  + I  +S +       V  +V+   P     F +     +  +     G ER DSV +GLQ V   ++ V +HD+ARP +   D+ ++L   +  RVG  +L  P + T+K   S ++ +  T++R  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPG-DHRFAQLPLANHPQITVVDGGNERADSVLAGLQAV-AEAQWVLVHDAARPCLHQDDLARLLAISENSRVG-GILASPVRDTMKRGESGKNAIAHTVERADLWHALTPQ 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_PROMP (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ispD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.588e-11
Identity = 43/157 (27.39%), Postives = 74/157 (47.13%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G RM A   K  + L G+ +  ++  +      V  + ++  P       ++ +  +  +K+   G  RQ SV++GL  +   +E V IHD AR LV    + K  M+  +  A +L      TIK  ++  ++  T +R+ LW  QTPQ
Sbjct:    4 LIPAAGSGSRMKAGRNKLLIELEGESLIFWTIKSVLSASLVSWVGIIGQPYDKQELLKSVKNFSNKIKWINGGDTRQKSVFNGLNSLPSTAEKVLIHDGARCLVGPDLINKCAMELEQNDAVILATKVTDTIKIVDNRGYIKETPNRQNLWAAQTPQ 160          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_BARQU (Bifunctional enzyme ispD/ispF OS=Bartonella quintana GN=ispDF PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.588e-11
Identity = 48/159 (30.19%), Postives = 73/159 (45.91%), Query Frame = 1
Query:  208 LLAGGKGKRMGA--NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            +LA G+GKR G+    PKQY  L  +P+  ++   F +   +  I++V  P    I E+        L     G  RQ S   GL  +  F  + V IHD ARP + +K ++K+          +  +P   T+K  NS   V+ T+    L+  QTPQ
Sbjct:    1 MLAAGRGKRAGSLQKNPKQYRLLGQKPVICHTVRCFCQHPAITTIILVIHPEDRQICEQAITDFKEHLIIVEGGNTRQISTLRGLHALKKFKPKYVHIHDGARPFIENKLLEKIHTTVNHQEGVLPVLPVSDTLKRVNSTHRVLETIPHTHLYSAQTPQ 159          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_AGRRK (Bifunctional enzyme ispD/ispF OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=ispDF PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.588e-11
Identity = 49/164 (29.88%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  205 ILLAGGKGKRMGA--NMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI--NVDLKFSLPGKERQDSVYSGLQEVDFNS-ELVCIHDSARPLVLSKDVQKVLMDALRVGA-AVL-GVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            +++A G+G+R G+    PKQY  + G+P+  ++   F    +  +IV+V       +    +E I  +  ++ +  G  RQ SV +G+++++      V IHD+ RP     D+   +  AL  GA AVL  +P   T+K A++++ V  T+ R  L+  QTPQ
Sbjct:   15 VIVAAGRGERAGSPEEGPKQYRAIGGRPVIAHTLEKFVTWPQTTKIVIVIHRDDEKLLRSAQETIVDSSGVEIAFGGTTRQQSVLAGVRQLEKTGVSHVMIHDAVRPF-FDHDLLDRVAAALAAGAPAVLPAMPVTDTLKRADTDALVTETVPRAGLYAAQTPQ 177          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SALRD (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=ispD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 51/159 (32.08%), Postives = 79/159 (49.69%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPS-YSDIFEETK-EKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+R+G   PKQ+  L   P+ +    +F R   V   VV    S  +D+ +  + E ++V       G +RQ SV   L+ V      V +HD+ARP V +  VQ V+      GAA L VP   T++  +++  +  T+ R  L+ MQTPQ
Sbjct:    4 LIPAAGGGRRLGGR-PKQFRALGEHPVLVQVLLSFERHPAVGHAVVAAPESRVTDVTDRLQAEGLSVLTAVVGGGADRQSSVQHALRAVPDPVNTVLVHDAARPFVAAAQVQAVVQAVRTGGAASLVVPVADTLRRGDADR-LGETVSRDGLYRMQTPQ 160          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SALAR (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ispD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 49/160 (30.63%), Postives = 79/160 (49.38%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVL--MDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  + I  +S +       V  +V+V  P     F +     +  +     G ER DSV +GLQ V   ++ V +HD+ARP +   D+ ++L   +  RVG  +L  P + T+K     ++ +  T++R  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIVISPG-DHRFAQLPLANHPQITVVDGGNERADSVMAGLQAV-AQAKWVLVHDAARPCLHQDDLARLLAISENSRVG-GILASPVRDTMKRGEPGKAAIAHTVERADLWHALTPQ 167          
The following BLAST results are available for this feature:
BLAST of FC931379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ISPD_PSEF54.279e-1132.742-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_METCA4.279e-1131.332-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPDF_RHILW4.279e-1130.67Bifunctional enzyme ispD/ispF OS=Rhizobium legumin... [more]
ISPD_SHESH5.588e-1130.192-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_SALPB5.588e-1130.632-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_PROMP5.588e-1127.392-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPDF_BARQU5.588e-1130.19Bifunctional enzyme ispD/ispF OS=Bartonella quinta... [more]
ISPDF_AGRRK5.588e-1129.88Bifunctional enzyme ispD/ispF OS=Agrobacterium rad... [more]
ISPD_SALRD7.299e-1132.082-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_SALAR7.299e-1130.632-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]

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Properties
Property NameValue
Genbank descriptionC34104E04EF PostHarvP1 Citrus clementina cDNA clone C34104E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931379 ID=FC931379; Name=FC931379; organism=Citrus clementina; type=EST; length=750bp
CTGCTTCAGCTGAACCTTGCTCTGTCTTCTTCAACTTCTTCTCTCTCACT
GTTCCCAGACAACCACCAAACTTTCTCCAGAACTGGTCATAAAAATCAGT
TCTTTGGCTTGACAAGGAAGGCCAGGCTTGCAACATCCAGGATTAGATGT
TCTGCTAAAGTTGATAATGGTTCTGTCGTTGTTAAAGATAAGAGTGTATC
AGTTATTCTTTTGGCTGGAGGGAAGGGCAAAAGAATGGGTGCGAACATGC
CAAAGCAGTATCTACCACTTTTGGGTCAACCCATTGCATTGTATAGTTTC
TACACTTTCTCACGCATGGTTGAAGTGAAGGAAATTGTGGTAGTTTGTGA
TCCATCTTACAGTGACATCTTTGAAGAAACCAAAGAGAAGATCAATGTAG
ACCTTAAATTCTCACTTCCGGGGAAGGAGAGGCAAGATTCTGTTTACAGC
GGACTTCAGGAAGTTGATTTTAACTCTGAGCTCGTGTGCATCCATGATTC
TGCTAGACCTTTGGTATTATCTAAAGATGTGCAAAAGGTCCTTATGGATG
CTTTGCGGGTCGGAGCAGCTGTACTTGGTGTTCCTGCCAAAGCTACAATT
AAAGAGGCAAATAGCGAATCTTTTGTGGTTAGAACCCTGGACCGCAAAAC
TCTTTGGGAAATGCAGACCCCTCAGGTGATCAAGCCTGGCTTGCTTAAAA
AGGGTTTGAGCTTGTCATAGGGAAGGTCTTGAAGTACTGATGATGTATCT
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