FC931379

Overview
NameFC931379
Unique NameFC931379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_PSEAB (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ispD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 52/167 (31.14%), Postives = 83/167 (49.70%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEV----DFNSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G G RM A+ PKQYL L G+ +   +   F     ++ +VV     DP +  +       +    + +  G ER DSV SGL  +        + V +HD+ARP +   D+ ++L +     VG  +L VPA+ T+K A+ +  V  T+DR  +W   TPQ+
Sbjct:   12 VIPAAGVGSRMRADRPKQYLDLAGRTVIERTLDCFLEHPMLRGLVVCLAEDDPYWPGLDCAASRHV----QRAAGGVERADSVLSGLLRLLELGAQADDWVLVHDAARPNLTRGDLDRLLEELAEDPVGG-LLAVPARDTLKRADRDGRVSETIDRSVVWLAYTPQM 173          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_PASMU (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Pasteurella multocida GN=ispD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 56/165 (33.94%), Postives = 81/165 (49.09%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF---NSE--LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G RM  + PKQYL + G+ I  ++         +++I++     DP  S     T  KI +       G  R DSV +GL  V     NSE   V +HD+ARP +  +D+ K++    + GA +L +PA  TIK A     +  T DR  LW  QTPQ
Sbjct:   15 VVPAAGIGSRMQMDKPKQYLHIHGKTILEHTLSVLLGYPLIEKIILAVAANDPYISTCPLLTHPKIQL----VEGGSSRADSVLNGLNAVKSAVQNSEDFWVMVHDAARPCLTHQDLDKLVQVEDQNGA-ILAIPATDTIKRALHNQQIHYTEDRSQLWLAQTPQ 174          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_BACTN (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Bacteroides thetaiotaomicron GN=ispD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 50/163 (30.67%), Postives = 88/163 (53.99%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK--INVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIK---EANSESFVVRTLDRKTLWEMQTPQV 678
            I++AGGKG RMG+++PKQ+LP+ G+P+ +++   F +   + +I++V      D +++  E+   +V+   +  G+ R  SV +GL  V     LV +HD  RP V  + +++    A +  A +  V    T++   +A SE     T+ R     +QTPQV
Sbjct:    6 IIVAGGKGLRMGSDLPKQFLPVGGKPVLMHTLEAFRKYDAMLQIILVLPREQQDFWKQLCEEHHFSVEHLVADGGETRFHSVKNGLALVQAPG-LVGVHDGVRPFVTLEVIRRCYELAEQHKAVIPVVDVVETLRHLTDAGSE-----TVSRTEYKLVQTPQV 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDL_HUMAN (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase-like protein OS=Homo sapiens PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 49/166 (29.52%), Postives = 82/166 (49.40%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI-NVDLKFSLPGKERQDSVYSGLQ---EVDFNS-----ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            +L AGG G+RMG   PKQ+ P+L +P+  Y+     R+  +K+IVV       ++ +   +K  +  +     G  R  S+++GL+   E   NS     E+V IHD+ RP V    + KV+  A   GAA    P  +T+   +++  +  +L+R      + PQ
Sbjct:   50 VLPAGGCGERMGVPTPKQFCPILERPLISYTLQALERVCWIKDIVVAVTGENMEVMKSIIQKYQHKRISLVEAGVTRHRSIFNGLKALAEDQINSKLSKPEVVIIHDAVRPFVEEGVLLKVVTAAKEHGAAGAIRPLVSTVVSPSADGCLDYSLERARHRASEMPQ 215          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ROSDO (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=ispD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 47/157 (29.94%), Postives = 75/157 (47.77%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            +++A G+G R G  +PKQ+  L    +A  S   F+   +++++V+V  P   D     +E     L  +  G  R  SV +GL+ ++  ++ V IHD+ARP V ++ +  V+  ALR   A     A            V  T DR  L+  QTPQ
Sbjct:    6 VIVAAGRGVRAGGGIPKQWRALHKGTVAQASIRAFTGHADIRDVVLVLHPDDIDTDLWPREP---GLIVASGGASRSASVLAGLRMLNGKTDAVLIHDAARPCVTTRVIDDVI-SALRTAQAAAPAVAVVDALWTGENGQVTGTADRTGLYRAQTPQ 158          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_PSYA2 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=ispD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 51/198 (25.76%), Postives = 93/198 (46.97%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKE--IVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEV----DFNSELVCIHDSARPLVLSKDVQKVLMDALR-------------------VGAAVLGVPA------------KATIKEANSES---FVVRTLDRKTLWEMQTPQV 678
            +++A G+G R GA++PKQY  L GQ +  +S    +    + +  +VV  D S +           + + +++ G ER  SV +G++ +       ++LV IHD+ARP V + D+  V+  A+                    + A +L +P             + TI E++ ++   +  +T+DR  +W+ QTPQV
Sbjct:   19 MIVAAGRGSRFGASIPKQYTLLQGQTLLQHSVARLAESAYIYQCLLVVAADDSTAQTLS-----FALPIYYAVGGAERWQSVQAGVEAMINAGADEADLVVIHDAARPAVPTHDIDAVIQAAMLEPYGAILATPVADTLKQSYIAANILSMPVHEAVLPHQHTQPELTINESDRDALHAYAQKTIDRSHMWQAQTPQV 211          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_LARHH (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Laribacter hongkongensis (strain HLHK9) GN=ispD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 50/160 (31.25%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  214 AGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPS--YSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNS-ELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            A G G RMGA+ PKQYL L G P+  ++         +  ++VV  P   + D F+  ++ + +++   + G  R +SV +GL      + + V +HD+AR   L  D    L+D L+      +L +P   T+K   S   V +T+ R+ LW  QTPQ+
Sbjct:   10 AAGGGSRMGADRPKQYLDLAGAPLLAHTLRRLLAEPRLARVLVVLAPDDVWFDRFDWPRD-VRLEI-LRVGGATRAESVRNGLLHAGAAADDWVLVHDAAR-CCLPPDALDRLIDTLQADPVGGLLALPVADTLKRETSGQRVAQTVSREGLWLAQTPQM 166          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_CITK8 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ispD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 48/160 (30.00%), Postives = 79/160 (49.38%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKV--LMDALRVGAAVLGVPAKATIKEAN-SESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RM    PKQYL +  + I  +S +       V  +V+   P  S  F E     +  +     G ER DSV +GL+    +++ V +HD+ARP +   D+ ++  L +  R G  +L  P + T+K A   ++ +  T++R  LW   TPQ
Sbjct:   11 VVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDSR-FAELPLAQHPQVTVVDGGDERADSVLAGLRAAG-DAQWVLVHDAARPCLHQDDLARLLSLSETSRTG-GILAAPVRDTMKRAEPGKAAIAHTVERTDLWHALTPQ 167          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_RHIL3 (Bifunctional enzyme ispD/ispF OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=ispDF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 52/164 (31.71%), Postives = 85/164 (51.83%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANM--PKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKI--NVDLKFSLPGKERQDSVYSGLQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGA-AVL-GVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            +++A G+G+R G++   PKQY  + G+P+ +++   F       EIVVV  P    +F      I     ++    G  RQ SV +GL+ + D     V IHD+ RP      + ++  ++L  GA AVL  +P   T+K A++   V+ T+ R+ L+  QTPQ
Sbjct:   15 VIVAAGRGERAGSSKEGPKQYRMIGGKPVIVHTLENFMTWEAATEIVVVIHPDDEALFARAFRHIISATPIETVHGGATRQQSVLAGLRYLKDKQISHVLIHDAVRPFFDHALLDRI-AESLDAGAQAVLPAIPVTDTLKRADNAGTVLTTVSREHLYAAQTPQ 177          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_NITHX (Bifunctional enzyme ispD/ispF OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=ispDF PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 48/161 (29.81%), Postives = 79/161 (49.07%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP---GKERQDSVYSGLQEVDFNS-ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I++A G+G R G   PKQY  + G+ +   +   F    +V  +  V +P    +F +         ++  P   G  RQ SV++GL+ +  ++ ++V IHD+ARP      +++ +      GAAV  +P   TIK+ ++   V  T DR  L   QTPQ
Sbjct:   10 IIVAAGRGLRAGTGGPKQYRTIAGRTVIARAMEAFCDHPDVFAVQPVLNPDDLAMFNQAV----AGFRYRPPANGGATRQASVHAGLEALAADAPDIVLIHDAARPFATPALIRRAIEATDITGAAVPVIPVTDTIKQVDASGAVNATPDRAKLRIAQTPQ 166          
The following BLAST results are available for this feature:
BLAST of FC931379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ISPD_PSEAB7.299e-1131.142-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_PASMU7.299e-1133.942-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_BACTN7.299e-1130.672-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPDL_HUMAN7.299e-1129.522-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ROSDO9.533e-1129.942-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_PSYA29.533e-1125.762-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_LARHH9.533e-1131.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_CITK89.533e-1130.002-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPDF_RHIL39.533e-1131.71Bifunctional enzyme ispD/ispF OS=Rhizobium legumin... [more]
ISPDF_NITHX9.533e-1129.81Bifunctional enzyme ispD/ispF OS=Nitrobacter hambu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34104E04EF PostHarvP1 Citrus clementina cDNA clone C34104E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931379 ID=FC931379; Name=FC931379; organism=Citrus clementina; type=EST; length=750bp
CTGCTTCAGCTGAACCTTGCTCTGTCTTCTTCAACTTCTTCTCTCTCACT
GTTCCCAGACAACCACCAAACTTTCTCCAGAACTGGTCATAAAAATCAGT
TCTTTGGCTTGACAAGGAAGGCCAGGCTTGCAACATCCAGGATTAGATGT
TCTGCTAAAGTTGATAATGGTTCTGTCGTTGTTAAAGATAAGAGTGTATC
AGTTATTCTTTTGGCTGGAGGGAAGGGCAAAAGAATGGGTGCGAACATGC
CAAAGCAGTATCTACCACTTTTGGGTCAACCCATTGCATTGTATAGTTTC
TACACTTTCTCACGCATGGTTGAAGTGAAGGAAATTGTGGTAGTTTGTGA
TCCATCTTACAGTGACATCTTTGAAGAAACCAAAGAGAAGATCAATGTAG
ACCTTAAATTCTCACTTCCGGGGAAGGAGAGGCAAGATTCTGTTTACAGC
GGACTTCAGGAAGTTGATTTTAACTCTGAGCTCGTGTGCATCCATGATTC
TGCTAGACCTTTGGTATTATCTAAAGATGTGCAAAAGGTCCTTATGGATG
CTTTGCGGGTCGGAGCAGCTGTACTTGGTGTTCCTGCCAAAGCTACAATT
AAAGAGGCAAATAGCGAATCTTTTGTGGTTAGAACCCTGGACCGCAAAAC
TCTTTGGGAAATGCAGACCCCTCAGGTGATCAAGCCTGGCTTGCTTAAAA
AGGGTTTGAGCTTGTCATAGGGAAGGTCTTGAAGTACTGATGATGTATCT
back to top