FC931379

Overview
NameFC931379
Unique NameFC931379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_BACA2 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Bacillus amyloliquefaciens (strain FZB42) GN=ispD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.190e-22
Identity = 60/159 (37.74%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEK--INVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G+GKRM A   K ++ L G P+ +++   F      ++I++V + S  + F +   +  I  +++    G ERQ SVY GL+ +D  S +V +HD ARP V  + + K++  A   GAAVL VP K TIK A   S V  T DR +LW +QTPQ
Sbjct:    6 VIPAAGQGKRMKAGKNKLFISLKGAPVIIHTLRVFESHAPCQKIILVINESEREDFRQLLAQFPIQTEIELVTGGAERQHSVYEGLKMIDKES-VVLVHDGARPFVTHQHIDKLVETAEEAGAAVLAVPVKDTIKRAEG-SRVAETFDRSSLWAVQTPQ 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_MOOTA (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=ispD PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.200e-21
Identity = 59/160 (36.88%), Postives = 83/160 (51.88%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK--EKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            I+ A G+G+R+G  + K +LPL G+P+  YS         V EI++V  P    +  +    E           G ERQDS+  GL+ V   +E V +HD ARP +    ++K ++ A   GAA+  +P K TIK+      V  TLDRK LW  QTPQV
Sbjct:    7 IIAAAGRGRRLGREVNKVFLPLAGKPMLAYSLAVAVASPLVDEIIIVTRPDDIPLCRQVVAGEGAGKVKAIVAGGAERQDSIAEGLKAVARAAEWVAVHDGARPFLTPALLEKTILAARNTGAAIAALPVKETIKQGGEAGIVAATLDRKGLWSAQTPQV 166          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_UNCTG (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=ispD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 58/158 (36.71%), Postives = 90/158 (56.96%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            I+ A G GKR G+ + KQ+L L G+P+ L+S   F+ +   K+I+VV     SD+ E    K       +  G ER DSV +GL  V  + + + +HD++RPL+  KD+  VL  A +   AV    AK T+K  +++ ++++TLDR  L   QTPQ+
Sbjct:    6 IIAAAGSGKRFGSRVSKQFLNLSGKPVFLWSVEAFASIKSFKQIIVVVP---SDMVEFLSLKYKTGFVCATGGNERFDSVKNGLALVGDDIDFIAVHDASRPLISKKDILLVLEKAAKTKVAVAVEKAKDTVKLVSADGYILKTLDRTILRNAQTPQI 160          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_BACWK (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Bacillus weihenstephanensis (strain KBAB4) GN=ispD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 64/159 (40.25%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD--LKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I+ A G+GKRMGA   K +L + G PI +++   F +    K I++  +      FEE  +K  V+  ++F   G ERQDSVY+ LQ V    E V +HD ARP V +K +Q VL  A + GA++  VP K TIK+   +  VV T++R  L  +QTPQ
Sbjct:    5 IIPAAGQGKRMGAGKNKLFLLINGVPIIVHTLRAFEKDKACKRIIMAINEEERPYFEELMQKYPVEKQVQFIQGGAERQDSVYNALQYVS-GVEYVLVHDGARPFVTNKMMQDVLTAAEKYGASICAVPVKDTIKKV-EQGVVVETVERSQLKAVQTPQ 161          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_BACSK (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Bacillus clausii (strain KSM-K16) GN=ispD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 66/163 (40.49%), Postives = 93/163 (57.06%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP------GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I+LA G+GKRM A M KQ + L G P+ ++S   F      K I +V     S+   +T EK+  + +          G ERQDSVY+GL+ ++  +E+V IHD ARP V    + K+  +A + GAA+  VP K T+K A+  S V RT++RK LW  QTPQ
Sbjct:    6 IVLAAGQGKRMKAGMNKQLIDLNGIPLIVHSLRLFEEDAACKAIWLVV----SETERQTMEKLVAEYQIGKVKGLVNGGAERQDSVYAGLKGME-EAEIVLIHDGARPFVAKPILTKLADEAAQSGAAIAAVPVKDTVKLADKNS-VARTVERKNLWAAQTPQ 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_CLOD6 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Clostridium difficile (strain 630) GN=ispD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.492e-21
Identity = 60/159 (37.74%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETK-EKINV-DLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I++A G G+RM  ++ KQ++ L  + I  ++   F   + + EIVV       D F+E    K N  ++K +  GKERQDS+Y+GL+++D N ++V IHD ARP V  + + + +  A    A V+GVP   TIK   S+  V  T +R  LW  QTPQ
Sbjct:    5 IIVAAGSGRRMNLDINKQFIKLREKEIIAHTIQVFYENINIDEIVVCIKKEEEDFFKENIINKYNFKNIKIAYGGKERQDSIYNGLKKLDKNCDIVLIHDGARPFVDHRIINESIKVAKEKKAVVVGVPVSDTIKIV-SDGTVKETPERNLLWAAQTPQ 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SYMTH (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Symbiobacterium thermophilum GN=ispD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.780e-21
Identity = 63/161 (39.13%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL---PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            I+ A G G+RMG    KQ+LPL G+P+ + +   FS    V EIV+       D+ E T+  +    K +     G ERQDSV++ LQ V     +V +HD+ARPL+ +  ++ VL  A    A V+ VP + TIK+   +  VV T DR  LW +QTPQV
Sbjct:   15 IIPAAGSGRRMGGGTAKQFLPLRGEPVLVRTVRRFSECPLVDEIVIAA----GDV-EATRALVGHMPKVTRIVQGGAERQDSVWAALQAVHSRPRIVAVHDAARPLLTADVLKGVLQAAADHPAQVVAVPVQDTIKQVGPDGVVVATPDRSMLWAVQTPQV 170          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_DICT6 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=ispD PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20
Identity = 59/162 (36.42%), Postives = 95/162 (58.64%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKE--KINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIKEA-NSESFVVRTLDRKTLWEMQTPQV 678
            I++A GK KR G +  K  + + G PI  YS      + ++++I++V      + ++E  +  K+    K  L G+ERQDSVY+ L+ VDF+ + V IHD+ARP V  K +++++        +A+LG+P K TIK   N+   ++ TLDR  LW +QTPQ+
Sbjct:    7 IVVAAGKSKRFGED--KLLINIKGMPIVYYSIRKLHDIKDIEKIILVVRNEMLEYYKEKIKDWKLEKVYKLVLGGEERQDSVYNALKSVDFHCDYVLIHDAARPFVSIKKIEELIKFCTENSLSAILGIPVKDTIKVVDNTTKRIMETLDRSKLWIIQTPQM 166          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_BACHK (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Bacillus thuringiensis subsp. konkukian GN=ispD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.956e-20
Identity = 60/159 (37.74%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD--LKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I+ A G+GKRMGA   K +L +   PI +++   F +    K I++  +      FEE  +K  V+  ++F   G ERQDSVY+ +Q    + E V +HD ARP V +K +Q VL  A + GA++  VP K T+K+   +  VV T++R  L  +QTPQ
Sbjct:    5 IIPAAGQGKRMGAGKNKLFLLINEVPIIVHTLRAFEKDKACKNIIMAINEEERPYFEELMQKYPVEKPVQFIQGGAERQDSVYNAIQHTT-DVEYVLVHDGARPFVTNKVIQDVLTAAEKYGASICAVPVKDTVKKV-EQGVVVETVERSQLKAVQTPQ 161          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_BACCZ (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Bacillus cereus (strain ZK / E33L) GN=ispD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.956e-20
Identity = 60/159 (37.74%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD--LKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I+ A G+GKRMGA   K +L +   PI +++   F +    K I++  +      FEE  +K  V+  ++F   G ERQDSVY+ +Q    + E V +HD ARP V +K +Q VL  A + GA++  VP K T+K+   +  VV T++R  L  +QTPQ
Sbjct:    5 IIPAAGQGKRMGAGKNKLFLLINEVPIIVHTLRAFEKDKACKNIIMAINEEERPYFEELMQKYPVEKPVQFIQGGAERQDSVYNAIQHTT-DVEYVLVHDGARPFVTNKVIQDVLTAAEKYGASICAVPVKDTVKKV-EQGVVVETVERSQLKAVQTPQ 161          
The following BLAST results are available for this feature:
BLAST of FC931379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ISPD_BACA29.190e-2237.742-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_MOOTA1.200e-2136.882-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_UNCTG1.568e-2136.712-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_BACWK1.568e-2140.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_BACSK1.568e-2140.492-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_CLOD63.492e-2137.742-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_SYMTH7.780e-2139.132-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_DICT61.733e-2036.422-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_BACHK2.956e-2037.742-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_BACCZ2.956e-2037.742-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34104E04EF PostHarvP1 Citrus clementina cDNA clone C34104E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931379 ID=FC931379; Name=FC931379; organism=Citrus clementina; type=EST; length=750bp
CTGCTTCAGCTGAACCTTGCTCTGTCTTCTTCAACTTCTTCTCTCTCACT
GTTCCCAGACAACCACCAAACTTTCTCCAGAACTGGTCATAAAAATCAGT
TCTTTGGCTTGACAAGGAAGGCCAGGCTTGCAACATCCAGGATTAGATGT
TCTGCTAAAGTTGATAATGGTTCTGTCGTTGTTAAAGATAAGAGTGTATC
AGTTATTCTTTTGGCTGGAGGGAAGGGCAAAAGAATGGGTGCGAACATGC
CAAAGCAGTATCTACCACTTTTGGGTCAACCCATTGCATTGTATAGTTTC
TACACTTTCTCACGCATGGTTGAAGTGAAGGAAATTGTGGTAGTTTGTGA
TCCATCTTACAGTGACATCTTTGAAGAAACCAAAGAGAAGATCAATGTAG
ACCTTAAATTCTCACTTCCGGGGAAGGAGAGGCAAGATTCTGTTTACAGC
GGACTTCAGGAAGTTGATTTTAACTCTGAGCTCGTGTGCATCCATGATTC
TGCTAGACCTTTGGTATTATCTAAAGATGTGCAAAAGGTCCTTATGGATG
CTTTGCGGGTCGGAGCAGCTGTACTTGGTGTTCCTGCCAAAGCTACAATT
AAAGAGGCAAATAGCGAATCTTTTGTGGTTAGAACCCTGGACCGCAAAAC
TCTTTGGGAAATGCAGACCCCTCAGGTGATCAAGCCTGGCTTGCTTAAAA
AGGGTTTGAGCTTGTCATAGGGAAGGTCTTGAAGTACTGATGATGTATCT
back to top