FC931379

Overview
NameFC931379
Unique NameFC931379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_BACSU (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Bacillus subtilis GN=ispD PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.282e-19
Identity = 51/159 (32.08%), Postives = 89/159 (55.97%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEE--TKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G+GKRM A   K ++ L G P+ +++   F    +  +I++V +    + F++  +       ++    G ERQ SVY GL+ V    ++V +HD ARP +  + + +++ +A + GAA+L VP K TIK    +  V  T++R +LW +QTPQ
Sbjct:    6 VIPAAGQGKRMKAGRNKLFIELKGDPVIIHTLRVFDSHRQCDKIILVINEQEREHFQQLLSDYPFQTSIELVAGGDERQHSVYKGLKAVK-QEKIVLVHDGARPFIKHEQIDELIAEAEQTGAAILAVPVKDTIKRV-QDLQVSETIERSSLWAVQTPQ 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SHEON (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Shewanella oneidensis GN=ispD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.242e-18
Identity = 56/159 (35.22%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV-GAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            I+ A G G RMGA  PKQYLPLLGQ I  ++         + +++V   P  +D +   + K +  LK  + G ER +SV + L +   NS    +HD+ARP +++ D+ K+L   ++    A+L +P + T+K ANS   +  T+ R  LW   TPQ+
Sbjct:   29 IVPAAGIGSRMGAGKPKQYLPLLGQSILAHTLDKLLSHPLISQVIVALHPEDADFYALPQAK-HPKLKTVIGGSERANSVLAALDKAPDNS-WALVHDAARPCLMASDIDKLLTSRVQFPQGAILAMPVRDTMKRANSLGEINSTVCRDNLWHALTPQL 185          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_CLOAB (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Clostridium acetobutylicum GN=ispD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.242e-18
Identity = 58/160 (36.25%), Postives = 87/160 (54.37%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEET---KEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I++A G+G RM  N  KQ++ + G+PI  Y+   F R   + EI++V   S  +   +    K K N        G ERQ SV +GL+ V  ++ +V IHD ARP V +K ++  +  A + G A  GV  K TIK  + + F  +T+DR  L+ +QTPQ
Sbjct:    5 IIMAAGRGSRMKVNKNKQFILIQGKPILAYTIDKFQRSPLIDEIIIVAAESEINFCMQEIVYKYKFNKVKNIVSGGSERQQSVMNGLKAVK-SANIVLIHDGARPFVDNKIIENGIKYAEKYGGAACGVQPKDTIKIKSEDGFSEKTIDRSKLFCVQTPQ 163          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_BACCN (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=ispD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.119e-18
Identity = 58/159 (36.48%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV--DLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I+ A G+GKRMGA   K +L +   PI +++   F +    ++I++  +      FE   +K  +  +++F   G ERQDSVY  LQ V   +E V +HD ARP V +K + +VL+ A   GA++  VP K TIK+  +++ V  T++R  L  +QTPQ
Sbjct:    5 IIPAAGQGKRMGAGKNKLFLLINEVPIIVHTLRAFEKDEACEKIIMAINEQERSDFEALIQKYGIRKNVQFIQGGAERQDSVYHALQYVK-ETEYVLVHDGARPFVTNKMIHEVLIVAKEKGASICAVPVKDTIKKVVNDA-VFETVERSQLRAVQTPQ 161          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_PELCD (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=ispD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.614e-18
Identity = 60/163 (36.81%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKIN-VDLK----FSLPGKERQDSVYSGLQEVD-FNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G+RMGA++ KQYLPL  +P+  ++   F R   +  I V+C  +   +    +E I+  D +        G ERQDSV +GLQ       ++V IHD ARPL+    ++  +  A + GAA++GVP K TIK   ++  +  T DR  LW+ QTPQ
Sbjct:    6 LIPAAGMGRRMGASVNKQYLPLGDRPVLSHTIALFDRHPGIDHIFVICPEAEFPLCR--REVIDPYDFRKVRGLVAGGAERQDSVRNGLQACQAAEGDIVLIHDGARPLLPPALIEPTVAAAQQCGAAIVGVPVKDTIKLV-TDGMIDSTPDRSLLWQAQTPQ 165          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_BACP2 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Bacillus pumilus (strain SAFR-032) GN=ispD PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.051e-17
Identity = 52/159 (32.70%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G+GKRM A   K ++ L   P+ +++   F    + K +++  +      FE   +        SL   G+ERQ SVY GL+ V  ++++V +HD ARP +    +  ++  A+  G+AV+ VP K TIK    E  V +T++R++LW +QTPQ
Sbjct:    6 VIPAAGQGKRMKAGRNKLFIELKRMPVIIHTLKVFDAHAQCKRMILAINEEERQDFERLLKVHAFQTPVSLVNGGEERQQSVYEGLKAVK-DADIVLVHDGARPFIKHTQIDLLVKAAIEKGSAVVAVPVKDTIKRV-QEGKVEQTIERQSLWAVQTPQ 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_CARHZ (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=ispD PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.342e-17
Identity = 51/163 (31.29%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV-DLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPL----VLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            I+ AGG G+R G   PKQ+L L G P+ + +      +  V ++V+    +Y ++  +   + N+  +K +  G  R++SV  G++ +  N  ++ +HD  RP      LS+ V+K+   +   G A+L VP + T+KE   ++ V+ TLDR  L+ +QTPQ+
Sbjct:    7 IVTAGGAGRRFGGEKPKQFLELSGIPVIIITLKRMVNLPIVGQVVLTVPENYIEVAGDLLSRYNLAGIKLTAGGTTRRESVLRGIRALTGNFSIIAVHDGVRPFFPKGALSEGVKKL---SEGYGGAILAVPLRDTVKEV-KDNVVISTLDRSRLYAVQTPQI 165          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_RHOP5 (Bifunctional enzyme ispD/ispF OS=Rhodopseudomonas palustris (strain BisA53) GN=ispDF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.342e-17
Identity = 59/158 (37.34%), Postives = 84/158 (53.16%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNS-ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I++AGG+G R G   PKQY  L GQP+   S   F    +V  +  V  P    +FE+    +      +  G  RQ SVYSGL+ +  ++ ++V IHD+AR  V +  + + ++ A R GAAV  +P   TIK+ N  + V  T DR TL   QTPQ
Sbjct:   10 IIVAGGRGLRAGGGGPKQYRTLAGQPVIYRSMQPFCTHPDVFAVQPVTSPDDIALFEQAVAGLTHRPPAN-GGATRQQSVYSGLEALAKDAPDIVLIHDAARAFVDAALISRAIVAAQRTGAAVPTIPVTDTIKQVNGTNDVEATPDRATLRIAQTPQ 166          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_LYSSC (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Lysinibacillus sphaericus (strain C3-41) GN=ispD PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.996e-17
Identity = 54/159 (33.96%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            +L A G GKRMGA   K +L LL +PI +++   F +      I +   P      +E  ++  +     LP  G ERQ SV+S ++E++   ++V +HD+ARP +    +  ++  A   GAA+ GV AK T+K+  +   +  T+DR +LW +QTPQ
Sbjct:    6 VLPAAGSGKRMGAGQNKLFLKLLKKPILIHTLEVFQQDPFCTGIWLAVKPEERIYIQELLDEYRITKVKGLPNGGAERQHSVHSCMKEME-QVDIVLVHDAARPFITHAIIANLVQSAHDFGAAIAGVRAKDTMKKVRN-GVIEETVDRDSLWMIQTPQ 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD1_LISMO (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1 OS=Listeria monocytogenes GN=ispD1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.996e-17
Identity = 52/160 (32.50%), Postives = 84/160 (52.50%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINV---DLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            + LA G+GKRM A   K +L L+G+PI +++   F       +++VVC        +E   ++NV    ++    G ERQ SV +GL+       +V +HD ARP +    + ++L+   +  AA+  V  K T+K       V  T+DR+ LW++QTPQ
Sbjct:    6 VFLAAGQGKRMNAQKNKMWLELVGEPIFIHALRPFLADNRCSKVIVVCQEEERKHVKELMSQLNVAEHRIEIVKGGSERQYSVAAGLERCG-TGRVVLVHDGARPFITLDIIDRLLIGVEQSKAAICAVKVKDTVKRV-MNGVVQETVDRENLWQVQTPQ 163          
The following BLAST results are available for this feature:
BLAST of FC931379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ISPD_BACSU7.282e-1932.082-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_SHEON1.242e-1835.222-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_CLOAB1.242e-1836.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_BACCN2.119e-1836.482-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_PELCD3.614e-1836.812-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_BACP21.051e-1732.702-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_CARHZ2.342e-1731.292-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPDF_RHOP52.342e-1737.34Bifunctional enzyme ispD/ispF OS=Rhodopseudomonas ... [more]
ISPD_LYSSC3.996e-1733.962-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD1_LISMO3.996e-1732.502-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]

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Properties
Property NameValue
Genbank descriptionC34104E04EF PostHarvP1 Citrus clementina cDNA clone C34104E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931379 ID=FC931379; Name=FC931379; organism=Citrus clementina; type=EST; length=750bp
CTGCTTCAGCTGAACCTTGCTCTGTCTTCTTCAACTTCTTCTCTCTCACT
GTTCCCAGACAACCACCAAACTTTCTCCAGAACTGGTCATAAAAATCAGT
TCTTTGGCTTGACAAGGAAGGCCAGGCTTGCAACATCCAGGATTAGATGT
TCTGCTAAAGTTGATAATGGTTCTGTCGTTGTTAAAGATAAGAGTGTATC
AGTTATTCTTTTGGCTGGAGGGAAGGGCAAAAGAATGGGTGCGAACATGC
CAAAGCAGTATCTACCACTTTTGGGTCAACCCATTGCATTGTATAGTTTC
TACACTTTCTCACGCATGGTTGAAGTGAAGGAAATTGTGGTAGTTTGTGA
TCCATCTTACAGTGACATCTTTGAAGAAACCAAAGAGAAGATCAATGTAG
ACCTTAAATTCTCACTTCCGGGGAAGGAGAGGCAAGATTCTGTTTACAGC
GGACTTCAGGAAGTTGATTTTAACTCTGAGCTCGTGTGCATCCATGATTC
TGCTAGACCTTTGGTATTATCTAAAGATGTGCAAAAGGTCCTTATGGATG
CTTTGCGGGTCGGAGCAGCTGTACTTGGTGTTCCTGCCAAAGCTACAATT
AAAGAGGCAAATAGCGAATCTTTTGTGGTTAGAACCCTGGACCGCAAAAC
TCTTTGGGAAATGCAGACCCCTCAGGTGATCAAGCCTGGCTTGCTTAAAA
AGGGTTTGAGCTTGTCATAGGGAAGGTCTTGAAGTACTGATGATGTATCT
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