FC931379

Overview
NameFC931379
Unique NameFC931379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_CLONN (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Clostridium novyi (strain NT) GN=ispD PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.219e-17
Identity = 58/160 (36.25%), Postives = 84/160 (52.50%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPS-YSDIFEETKEKINVDLKFSLP--GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I++A GKG RM  ++ KQ++ L G PI  Y+   F     +  IV+V          E   +K ++D    +   GK RQ+SV SGL  V  +SE+V IHD ARP +  + ++  +  A   GA+  GV  K TIK    + F   TL R+ L+ +QTPQ
Sbjct:    7 IVVAAGKGTRMNTDINKQFINLKGNPILYYTLKKFQDNTSIDNIVLVLSKDEIGYCVENVLKKYHLDKVTHIVEGGKTRQESVISGLNAVK-DSEIVLIHDGARPFIEDRIIEDGIKYAKLYGASACGVKVKDTIKVIAEDGFSKDTLKREELFSVQTPQ 165          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_MANSM (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=ispD PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.816e-17
Identity = 53/160 (33.12%), Postives = 89/160 (55.62%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G RM A+ PKQYL LLG+ +  ++         +++I++     DP Y D  +  ++     +K    G++R  SV++GL+ +      V +HD+ARP +  +D+ K+L      G  +L +PA  TIK A++E  +++T DR  LW+ QTPQ
Sbjct:   11 VVPAAGVGSRMQADKPKQYLTLLGKTLLEHTLEVLLSYTPIQQIILAVAENDP-YLDQLDVIRQP---KIKIVQGGRDRAGSVFNGLKAITQPHAWVMVHDAARPCLTHEDLDKLLQIEDDNGG-ILAIPAVDTIKRASAEKQIIQTEDRSQLWQAQTPQ 165          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ANATD (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=ispD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.902e-17
Identity = 54/158 (34.18%), Postives = 82/158 (51.90%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            IL A GKG R G N PKQ+L L  + I  YS   F +   +  IV++    + DI    K+K +  + +   G ER D+V  GL+ +    ++V IHDSARP +  + ++K++ D     A   G+ A  T+K    +  +  TL R  +  +QTPQV
Sbjct:    6 ILCAAGKGTRFGGNTPKQFLFLKNKMIIEYSLEVFEKSHFIDGIVLLVPQGFEDIARYLKDKFSKVIFWDYGGNERADTVKRGLEILKGECDIVAIHDSARPFITLELLEKLIADVETHFAVAPGILANDTVKFV-VDGHIQNTLPRSNICLIQTPQV 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_RHOPB (Bifunctional enzyme ispD/ispF OS=Rhodopseudomonas palustris (strain BisB18) GN=ispDF PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.163e-16
Identity = 56/158 (35.44%), Postives = 86/158 (54.43%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNS-ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I++AGG+G R GA  PKQY  L GQP+   +   F    E+  +  V  P  +++F+     +N     +  G  RQ SV +GL+ +  ++ ++V IHD+ARP V +  + + ++ A   GAAV  +    TIK+ N++  VV T DR  L   QTPQ
Sbjct:   10 IIVAGGRGLRAGAGGPKQYRSLAGQPVIFRAMQPFCTHAEIFAVQPVTSPDDAEMFKLAVAGLNYQPP-APGGATRQGSVRAGLEALAADAPDIVLIHDAARPFVDAALISRAIVAAQITGAAVPTIAVTDTIKQINAQGDVVATPDRARLRIAQTPQ 166          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_THEEB (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.518e-16
Identity = 56/159 (35.22%), Postives = 80/159 (50.31%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSL--PGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G GKRMGA+  K  L LLG+P+  ++    +    ++ I V+  P    I+E   E +N+     L   G+ RQ SV+ GLQ +   +E V IHD AR L     + +           +  VP K TIK  N E  VV+T +R +LW  QTPQ
Sbjct:    4 LIPAAGMGKRMGASHNKLRLQLLGKPLLAWTLAAVAAAEAIEWIGVIGQPEDFPIWEALLEDLNLRQPVHLITGGETRQASVFHGLQALPKTAEQVLIHDGARCLATPDLINRCAQALGTYAGLIAAVPVKDTIKIVNREGVVVQTPERDSLWAAQTPQ 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_PETMO (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=ispD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.590e-16
Identity = 52/163 (31.90%), Postives = 89/163 (54.60%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS---LPGKERQDSVYSGLQ---EVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I++A G+GKR G  +PKQ++ L  + I   S   F     + + +VV   +Y D+   T++++ +  KF    + G  RQ+SVY+ L    + +   + VCIHD+ RP V +  + + +  A  +G AVL   A+ TI + N+   +V+TL+R  ++   TPQ
Sbjct:    5 IIVAAGEGKRAGFEIPKQFVKLNNKTILRMSAEKFQNSASIDKFLVVSHRNYVDL---TEKEVKIFSKFENVVIGGSNRQESVYNALMYLGKKENKPDFVCIHDAVRPFVDTNKIDESIYKAKEIGGAVLAEMAENTISQVNN-GRIVKTLERSQIYLHHTPQ 163          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_RHOPS (Bifunctional enzyme ispD/ispF OS=Rhodopseudomonas palustris (strain BisB5) GN=ispDF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.590e-16
Identity = 56/158 (35.44%), Postives = 83/158 (52.53%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I++A G+G R GA  PKQY  L G+P+   +   F    EV  +  V +P  + IF +    +N        G  RQ SV +GL+ + + N ++V IHD+ARP V    + + ++ A + GAA+  V    T+K+ N+E  V  T DR  L   QTPQ
Sbjct:   10 IIVAAGRGLRAGAGGPKQYRTLAGRPVIARALQPFCTHPEVFAVQPVTNPDDTAIFNDAVTGLNFRPAVG-GGATRQGSVRAGLEALAELNPDIVLIHDAARPFVTPDLISRAIVAAGQTGAALPVVAINDTVKQINAEGCVEATPDRARLRIAQTPQ 166          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_DESAP (Bifunctional enzyme ispD/ispF OS=Desulforudis audaxviator (strain MP104C) GN=ispDF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.590e-16
Identity = 59/163 (36.20%), Postives = 82/163 (50.31%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFS-----LPGKE-RQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I++A G+  RMG    KQY  L G+P+   +   F     V  +V+V  P   D     +E+I     F+     +PG E R+DSV++GLQ +     LV +HD  RP V ++ +  V   A   GAA L VP K T+K        V TL R+ LW +QTPQ
Sbjct:    7 IVVAAGRSSRMGEGPKKQYRLLAGRPVLGRTLEVFEHAPAVDGVVLVVAPGEEDW---CREEIVTRFGFTKVVAVVPGGEVRRDSVWAGLQALP-PCALVLVHDGVRPFVTARQIAAVAEAARECGAATLAVPPKDTVKLGGPPGAPVSTLPRENLWLVQTPQ 165          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_VIBFM (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Vibrio fischeri (strain MJ11) GN=ispD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.383e-16
Identity = 58/162 (35.80%), Postives = 85/162 (52.47%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN--SELVCIHDSARPLVLSKDVQKVLMDAL--RVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            I+ A G G RM A+ PKQYL L G+ +  ++         V ++VV          E T  + N  ++ S  GKER DSV SGL  V  +  SE V +HD+ARP V   D+ K++ + +   +G  +L  P + T+K+A  E  +  T+DR  LW   TPQ+
Sbjct:   12 IVPAAGVGSRMKADRPKQYLLLNGKTVLEHTIEQLLAFPLVNKVVVAITDGDPYFPELTLAQDNRVIRVS-GGKERADSVLSGLSYVQEHQLSEWVMVHDAARPCVRHSDIDKLITEVIPEHIGG-ILASPVRDTMKQATQEQCIETTIDRSVLWHALTPQL 171          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SHEPA (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=ispD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.383e-16
Identity = 51/158 (32.28%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG-AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I+ A G G RMGA +PKQYL L  Q I  ++         +++++V  +P   + F    +  +  L+  + GKER DSV S L     ++  + +HD+ARP +  +D+ K++  A      A+LG P + T+K +N++  +  T+ R+ LW   TPQ
Sbjct:   11 IVPAAGIGSRMGAEIPKQYLQLNEQSILGHTLDCLLSHPSIEKVIVALNPE-DEFFARLPQAQHAKLQAVIGGKERADSVLSALTVAPTDAWAL-VHDAARPCLNHQDIDKLIESASSFPQGAILGAPVRDTMKRSNAQGLITETVCREKLWHALTPQ 166          
The following BLAST results are available for this feature:
BLAST of FC931379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ISPD_CLONN5.219e-1736.252-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_MANSM6.816e-1733.132-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ANATD8.902e-1734.182-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPDF_RHOPB1.163e-1635.44Bifunctional enzyme ispD/ispF OS=Rhodopseudomonas ... [more]
ISPD_THEEB1.518e-1635.222-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_PETMO2.590e-1631.902-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPDF_RHOPS2.590e-1635.44Bifunctional enzyme ispD/ispF OS=Rhodopseudomonas ... [more]
ISPDF_DESAP2.590e-1636.20Bifunctional enzyme ispD/ispF OS=Desulforudis auda... [more]
ISPD_VIBFM3.383e-1635.802-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_SHEPA3.383e-1632.282-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]

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Properties
Property NameValue
Genbank descriptionC34104E04EF PostHarvP1 Citrus clementina cDNA clone C34104E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931379 ID=FC931379; Name=FC931379; organism=Citrus clementina; type=EST; length=750bp
CTGCTTCAGCTGAACCTTGCTCTGTCTTCTTCAACTTCTTCTCTCTCACT
GTTCCCAGACAACCACCAAACTTTCTCCAGAACTGGTCATAAAAATCAGT
TCTTTGGCTTGACAAGGAAGGCCAGGCTTGCAACATCCAGGATTAGATGT
TCTGCTAAAGTTGATAATGGTTCTGTCGTTGTTAAAGATAAGAGTGTATC
AGTTATTCTTTTGGCTGGAGGGAAGGGCAAAAGAATGGGTGCGAACATGC
CAAAGCAGTATCTACCACTTTTGGGTCAACCCATTGCATTGTATAGTTTC
TACACTTTCTCACGCATGGTTGAAGTGAAGGAAATTGTGGTAGTTTGTGA
TCCATCTTACAGTGACATCTTTGAAGAAACCAAAGAGAAGATCAATGTAG
ACCTTAAATTCTCACTTCCGGGGAAGGAGAGGCAAGATTCTGTTTACAGC
GGACTTCAGGAAGTTGATTTTAACTCTGAGCTCGTGTGCATCCATGATTC
TGCTAGACCTTTGGTATTATCTAAAGATGTGCAAAAGGTCCTTATGGATG
CTTTGCGGGTCGGAGCAGCTGTACTTGGTGTTCCTGCCAAAGCTACAATT
AAAGAGGCAAATAGCGAATCTTTTGTGGTTAGAACCCTGGACCGCAAAAC
TCTTTGGGAAATGCAGACCCCTCAGGTGATCAAGCCTGGCTTGCTTAAAA
AGGGTTTGAGCTTGTCATAGGGAAGGTCTTGAAGTACTGATGATGTATCT
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