FC931379

Overview
NameFC931379
Unique NameFC931379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SHEAM (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=ispD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.536e-16
Identity = 57/162 (35.19%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEI--VVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDALRV-GAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            I+ A G G RMGA +PKQYLPLL +PI     +T  R++    I  V+V   +    F+   E  +  L   L GKER DSV + L  + D       +HD+ARP +   D+  +L   L     A+L +P + T+K A ++  +  T+ R+ LW   TPQ+
Sbjct:   14 IVPAAGIGSRMGATIPKQYLPLLDKPILA---HTLQRLLSHPAIDKVIVAVSAEDSWFDSLAEARDPKLTRVLGGKERADSVLAALSALPDSCDAWALVHDAARPCLTHGDIDALLASRLTYPQGAILAMPVRDTMKRAATDGSIETTVCREALWHALTPQL 172          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_LEPIN (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Leptospira interrogans GN=ispD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.536e-16
Identity = 55/162 (33.95%), Postives = 86/162 (53.09%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCD-PSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSE-LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI-KEANSESFVVRTLDRKTLWEMQTPQVI 681
            ++LAGG G RMG+ +PKQ+L L G+PI ++S   F    + K IV+V    S   I       +  + +    G+ R  S+  GL  +DF  E ++ +HD+ARP VL+ ++  +       G A L      T+ +E N ++  V  LDR+ +W M+TPQ I
Sbjct:   13 LILAGGTGSRMGSKIPKQFLELNGEPILIHSLKRFQNWGKQKRIVLVSHFESIPKIESICASYLENEDRIVQGGENRHSSMLCGLSVLDFKDEDIILVHDAARPFVLADELDSLCEKVRSDGIATLASRTSETVLEELNGKT--VSFLDREHVWFMKTPQGI 172          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_LEPIC (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ispD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.536e-16
Identity = 55/162 (33.95%), Postives = 86/162 (53.09%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCD-PSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSE-LVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATI-KEANSESFVVRTLDRKTLWEMQTPQVI 681
            ++LAGG G RMG+ +PKQ+L L G+PI ++S   F    + K IV+V    S   I       +  + +    G+ R  S+  GL  +DF  E ++ +HD+ARP VL+ ++  +       G A L      T+ +E N ++  V  LDR+ +W M+TPQ I
Sbjct:   13 LILAGGTGSRMGSKIPKQFLELNGEPILIHSLKRFQNWGKQKRIVLVSHFESIPKIESICASYLENEDRIVQGGENRHSSMLCGLSVLDFKDEDIILVHDAARPFVLADELDSLCEKVRSDGIATLASRTSETVLEELNGKT--VSFLDREHVWFMKTPQGI 172          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_BACLD (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=ispD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.842e-16
Identity = 53/166 (31.93%), Postives = 86/166 (51.81%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLK---FSLP------GKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G+GKRM A   K ++   G P+ +++   F      K I++V       I E+   + N  LK   F  P      G+ERQ SV++G++      E V +HD ARP +  + +++++  A   GAA++ VP K TIK    +  +  T++R +LW  QTPQ
Sbjct:    6 VIPAAGQGKRMNAGKNKLFIEAKGIPVIIHTLKVFENHDACKRIILV-------INEQEFGEFNTLLKTYHFKTPIEMVPGGRERQQSVFAGIKAAG-KEETVLVHDGARPFIKREYIEQLVEKAKETGAAIVAVPVKDTIKRV-QDGEIAGTIERSSLWAAQTPQ 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_RHOP2 (Bifunctional enzyme ispD/ispF OS=Rhodopseudomonas palustris (strain HaA2) GN=ispDF PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.842e-16
Identity = 55/159 (34.59%), Postives = 86/159 (54.09%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPG-KERQDSVYSGLQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I++A G+G R GA  PKQY  L G+P+   +   F    EV  +  V +P  +  F E      +D + ++ G   RQ SV +GL+ + + N ++V IHD+ARP V    + + ++ A + GAA+  +    T+K+ ++E  VV T DR  L   QTPQ
Sbjct:   10 IIVAAGRGLRAGAGGPKQYRTLAGRPVIARALQPFCTHPEVFAVQPVTNPDDTATFNEAVA--GLDFRPAVGGGATRQASVRAGLEALAELNPDIVLIHDAARPFVTPDLISRAIVAAGQTGAALPVIAVNDTVKQVDAEGCVVATPDRAQLRIAQTPQ 166          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ANAVT (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.285e-15
Identity = 51/159 (32.08%), Postives = 76/159 (47.80%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD--LKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G GKRMG +  K  L +  QPI  ++        E+  I ++  P+    F+     + +   ++F L G  RQ+SVY+GLQ +   +E V IHD AR L     +             +  VP K TIK A+ +  +  T DR+ LW  QTPQ
Sbjct:    4 LIPAAGVGKRMGCDRNKLLLEVRSQPIIAWTLLAAQAASEISWIGIISQPTDWPDFKSILANLQLTKPVEFILGGSTRQESVYNGLQALPKAAEQVLIHDGARCLATPNLLNSCAQAIRHCSGLIAAVPVKDTIKVADEDGIIQSTPDRRNLWAAQTPQ 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ALISL (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Aliivibrio salmonicida (strain LFI1238) GN=ispD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.285e-15
Identity = 56/164 (34.15%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC--DPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN--SELVCIHDSARPLVLSKDVQKVLMDAL--RVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            I+ A G G RM A+ PKQYL L G+ +  ++         V  ++V    D  Y D      +K  + +     G+ER DSV SGL+ V  N  S+ V +HD+ARP +   D+ K++   +   +G  +L  P + T+K+ANS+  +  T+DR  LW   TPQ+
Sbjct:   12 IVPAAGVGSRMKADRPKQYLVLDGKTVIEHTIENLLAFPMVNTVIVAISDDDPYFDALSIATDKRVIRVS---GGEERADSVLSGLEYVQKNTLSQWVMVHDAARPCLRHSDIAKLIEAVIPDHLGG-ILASPVRDTMKQANSDLSISTTIDRSVLWHALTPQL 171          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_VIBF1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=ispD PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.193e-15
Identity = 56/165 (33.94%), Postives = 87/165 (52.73%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFN--SELVCIHDSARPLVLSKDVQKVLMDAL--RVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            I+ A G G RM A+ PKQYL L G+ +  ++         V ++VV     DP + ++      ++   ++ S  GKER DSV SGL  V  +  SE V +HD+ARP +   D+ K++ + +   +G  +L  P + T+K A  E  +  T+DR  LW   TPQ+
Sbjct:   12 IVPAAGVGSRMKADRPKQYLLLNGKTVLEHTIEQLLAFPLVNKVVVAITDGDPYFPELTLAHDSRV---IRVS-GGKERADSVLSGLSYVQEHQLSEWVMVHDAARPCIRHSDIDKLIAEVIPEHIGG-ILASPVRDTMKHATQEQCIETTIDRSVLWHALTPQL 171          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_AZOSB (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Azoarcus sp. (strain BH72) GN=ispD PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.193e-15
Identity = 53/164 (32.32%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDL-KFSLPGKERQDSVYSGLQEV---DFNSELVCIHDSARPLVLSKDVQKVLMDAL--RVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            I+ A G G RMG+  PKQYLPLLG+P+  ++        E+ ++ VV     ++        +   L      G  R DSV +GL+ +      S+ V +HD+ARP +    + K++ +     VG  +L VP   T+K A+    V  T+ R +LW+ QTPQ+
Sbjct:   11 IVPAAGSGSRMGSERPKQYLPLLGKPLIYHTLSVLCAAPEIDKVFVVLSVGDAEWGRHDWRALGPKLVPLFCGGPTRADSVLAGLRAIAGEAVQSDWVLVHDAARPCLAPWHIDKLVRELAGDEVG-GLLAVPVADTLKRADGHRHVAATVPRDSLWQAQTPQM 173          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ANASP (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Anabaena sp. (strain PCC 7120) GN=ispD PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.193e-15
Identity = 50/159 (31.45%), Postives = 75/159 (47.17%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVD--LKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G GKRMG +  K  L +  QPI  ++        E+  I ++  P+    F+     + +   ++F L G  RQ+SVY+GLQ +   +E V IHD AR L     +             +  VP K TIK  + +  +  T DR+ LW  QTPQ
Sbjct:    4 LIPAAGVGKRMGCDRNKLLLEVRSQPIIAWTLLAAQAASEISWIGIISQPTDWPDFKSILANLQLTKPVEFILGGSTRQESVYNGLQALPTAAEQVLIHDGARCLATPNLLNSCAQAIRHCSGLIAAVPVKDTIKVVDEDGIIQNTPDRRNLWAAQTPQ 162          
The following BLAST results are available for this feature:
BLAST of FC931379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ISPD_SHEAM7.536e-1635.192-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_LEPIN7.536e-1633.952-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_LEPIC7.536e-1633.952-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_BACLD9.842e-1631.932-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPDF_RHOP29.842e-1634.59Bifunctional enzyme ispD/ispF OS=Rhodopseudomonas ... [more]
ISPD_ANAVT1.285e-1532.082-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ALISL1.285e-1534.152-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_VIBF12.193e-1533.942-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_AZOSB2.193e-1532.322-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ANASP2.193e-1531.452-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]

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Properties
Property NameValue
Genbank descriptionC34104E04EF PostHarvP1 Citrus clementina cDNA clone C34104E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931379 ID=FC931379; Name=FC931379; organism=Citrus clementina; type=EST; length=750bp
CTGCTTCAGCTGAACCTTGCTCTGTCTTCTTCAACTTCTTCTCTCTCACT
GTTCCCAGACAACCACCAAACTTTCTCCAGAACTGGTCATAAAAATCAGT
TCTTTGGCTTGACAAGGAAGGCCAGGCTTGCAACATCCAGGATTAGATGT
TCTGCTAAAGTTGATAATGGTTCTGTCGTTGTTAAAGATAAGAGTGTATC
AGTTATTCTTTTGGCTGGAGGGAAGGGCAAAAGAATGGGTGCGAACATGC
CAAAGCAGTATCTACCACTTTTGGGTCAACCCATTGCATTGTATAGTTTC
TACACTTTCTCACGCATGGTTGAAGTGAAGGAAATTGTGGTAGTTTGTGA
TCCATCTTACAGTGACATCTTTGAAGAAACCAAAGAGAAGATCAATGTAG
ACCTTAAATTCTCACTTCCGGGGAAGGAGAGGCAAGATTCTGTTTACAGC
GGACTTCAGGAAGTTGATTTTAACTCTGAGCTCGTGTGCATCCATGATTC
TGCTAGACCTTTGGTATTATCTAAAGATGTGCAAAAGGTCCTTATGGATG
CTTTGCGGGTCGGAGCAGCTGTACTTGGTGTTCCTGCCAAAGCTACAATT
AAAGAGGCAAATAGCGAATCTTTTGTGGTTAGAACCCTGGACCGCAAAAC
TCTTTGGGAAATGCAGACCCCTCAGGTGATCAAGCCTGGCTTGCTTAAAA
AGGGTTTGAGCTTGTCATAGGGAAGGTCTTGAAGTACTGATGATGTATCT
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