FC931379

Overview
NameFC931379
Unique NameFC931379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_TOLAT (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=ispD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.864e-15
Identity = 57/163 (34.97%), Postives = 89/163 (54.60%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVG--AAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G+G RM AN PKQYL L  + I  ++        ++++IVVV    D  +S +      +I V    +L G ER  SV +GL  V+  ++ V +HD+ARP +   D+   LM A  +G   A+L VP K T+K ++S+  +  T++R  LW   TPQ+
Sbjct:    7 VVPAAGRGSRMQANKPKQYLHLGDKTIIEHTLTRLLAHPQIEKIVVVIADDDHYFSSLPLANHPRIEV----TLGGPERAISVLNGLSSVE--TDWVLVHDAARPCITQSDLD-ALMAAAELGEDGAILAVPVKDTMKRSDSQQRIEETVERGHLWHALTPQM 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_SHEHH (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Shewanella halifaxensis (strain HAW-EB4) GN=ispD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.864e-15
Identity = 49/158 (31.01%), Postives = 84/158 (53.16%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRV-GAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            I+ A G G RMGA +PKQYL L  Q I  ++        ++ +++V  +P+  + F +  +  +  L+  + GKER DSV SGL+  +  +    +HD+ARP +  +D+ K++         A+L  P + T+K  + +  +  T+ R+ LW   TPQ
Sbjct:   11 IVPAAGIGSRMGAEIPKQYLQLNEQSILSHTLDCLLSHPDIDKVIVALNPA-DNYFAKLPQVKHPKLECVIGGKERADSVLSGLKIAEAGA-WALVHDAARPCLTHRDIDKLIASVNEFPQGAILAAPVRDTMKRTDEKGLISETVCRERLWHALTPQ 166          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_PARL1 (Bifunctional enzyme ispD/ispF OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=ispDF PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.864e-15
Identity = 50/158 (31.65%), Postives = 79/158 (50.00%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNS-ELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            +++A G+G R G   PKQY  L GQP+   +   F+   E+  ++ V  P  +  FE     +   L+    G  RQDSV +GL+ ++ ++ +LV IHD ARPL+ +  +   +        A  G+    TI+  + +     T+ R TLW  QTPQ
Sbjct:    6 LIVAAGRGSRAGPGAPKQYRLLAGQPVLRRTLAAFANHPEIMTVLTVIHPEDASAFEAASGGLPKLLEPVFGGSTRQDSVRAGLEALNADAPDLVLIHDGARPLISAPVISACIAALSTHEGAQAGLSLTDTIRRTD-KGMAAETVARDTLWRAQTPQ 162          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_PSEP1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ispD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.740e-15
Identity = 58/167 (34.73%), Postives = 89/167 (53.29%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF----NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G G RM A+ PKQYL L GQ +  +S   F     +K +VV     DP +  +   +  +I      +  G+ER DSV + L  +      +S+ V +HD+ARP +   D+ K+L +     VG  +L VPA+ T+K A+S   V  T+DR T+W+  TPQ+
Sbjct:   11 VIPAAGVGARMAADRPKQYLELAGQTLLEHSLDCFLGHPALKGVVVSIAEDDPYWPGLRYASDPRIQC----AAGGRERADSVLNALLVLHAQGAGDSDWVLVHDAARPNLARSDLDKLLSELADDPVGG-LLAVPARDTLKRADSHGRVSATVDRSTIWQAYTPQM 172          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_AZOSE (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Azoarcus sp. (strain EbN1) GN=ispD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.740e-15
Identity = 55/164 (33.54%), Postives = 84/164 (51.22%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDL-KFSLPGKERQDSVYSGLQEVDFN---SELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            I+ A G G RM  + PKQYLPLLG+P+  +S        +V ++ VV     ++        +   L      G  R DSV +GL+ V      S+ V +HD+ARP +    ++K+  +  R  VG  +L VP   T+K A+    V+ T+ R+ LW+ QTPQ+
Sbjct:   11 IVPAAGSGSRMATSRPKQYLPLLGKPLIFHSLAVLCAAPDVDKVFVVLSVEDAEWRRHDWSVLGPKLVPLFCGGGTRADSVLAGLRAVADEIEPSDWVLVHDAARPCLAPWHIEKLARELARDEVG-GLLAVPVADTLKRADEHRQVLATVPRENLWQAQTPQM 173          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_ACTP7 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=ispD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.740e-15
Identity = 55/160 (34.38%), Postives = 85/160 (53.12%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVV---CDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            ++ A G G RM A +PKQYL L  + I  ++   F    ++++IVV     DP Y  +      KI +       G+ R  SV++ LQ ++ +S  V +HD+ARP +   D+ K+L    + G A+L  PA  T+K A+ +  ++ T DR TLW   TPQ
Sbjct:    8 VIPASGVGSRMQAGLPKQYLKLQNKTILEHTLEIFLAHPDIEKIVVAVAETDPFYPQVALLDSPKIQI----VFGGETRAHSVFNALQVIEDDS-WVLVHDAARPCLKRSDLDKLLQSDAKHG-AILATPAIDTMKRADGDK-IMHTEDRSTLWHALTPQ 160          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_RHORT (Bifunctional enzyme ispD/ispF OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=ispDF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.740e-15
Identity = 51/158 (32.28%), Postives = 80/158 (50.63%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            +++A G+GKR G ++PKQY  L G+PI  ++   F+   +V  +  +  P   D++      +   L     G ERQDSV  GL+ + D   + V IHD ARPLV    + +V+        A+  +    T+K   +   + +T+DR  LW  QTPQ
Sbjct:    7 LIVAAGRGKRFGGDLPKQYQTLGGRPILRHTLARFAAHPDVALVRAIIHPEDRDLYGAAAHGLATLLDAVEGGAERQDSVRLGLESLTDVAPDYVLIHDGARPLVDGALIDRVIAALADHPGAIPALAVADTLKR-GAGGMIGQTVDRAGLWRAQTPQ 163          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_BRASB (Bifunctional enzyme ispD/ispF OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=ispDF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.740e-15
Identity = 53/158 (33.54%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQE-VDFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            IL+A G+G R G   PKQY  + G+ +   +   FS   +V  +  V +P   D+F      +  ++  +  G  RQ SV +GL+  V    ++V IHD+ARP V S  + + +  A + GAA+  VP   TIKE  +   ++ T +R  L   QTPQ
Sbjct:   10 ILVAAGRGLRAGTGGPKQYRAIGGRTVIHRALAAFSEHPDVAVVQPVVNPDDIDVFNAAVSGLRHEVP-AHGGATRQASVLAGLEALVPHRPDIVLIHDAARPFVTSAVISRAIQAAGKTGAAIPVVPVTDTIKEVTASGDIIATPERAKLRIAQTPQ 166          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPD_PSEPK (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Pseudomonas putida (strain KT2440) GN=ispD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 58/167 (34.73%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVC---DPSYSDIFEETKEKINVDLKFSLPGKERQDSVYSGLQEVDF----NSELVCIHDSARPLVLSKDVQKVLMDALR--VGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQV 678
            ++ A G G RM A+ PKQYL L GQ +  +S   F     +K +VV     DP +  +   +  +I+     +  G+ER DSV + L  +      +S+ V +HD+ARP +   D+ K+L +     VG  +L VPA+ T+K A+S   V  T+DR T+W+  TPQ+
Sbjct:   11 VIPAAGVGARMAADRPKQYLELAGQTLLEHSLDCFLGHPALKGVVVSIAEDDPYWPGLRCASDPRIHC----AAGGRERADSVLNALLVLHAQGAADSDWVLVHDAARPNLARSDLDKLLSELADDPVGG-LLAVPARDTLKRADSHGRVSATVDRSTIWQAYTPQM 172          
BLAST of FC931379 vs. ExPASy Swiss-Prot
Match: ISPDF_BRAJA (Bifunctional enzyme ispD/ispF OS=Bradyrhizobium japonicum GN=ispDF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 59/161 (36.65%), Postives = 80/161 (49.69%), Query Frame = 1
Query:  205 ILLAGGKGKRMGANMPKQYLPLLGQPIALYSFYTFSRMVEVKEIVVVCDPSYSDIFEETKEKINVDLKFSLP---GKERQDSVYSGLQEV-DFNSELVCIHDSARPLVLSKDVQKVLMDALRVGAAVLGVPAKATIKEANSESFVVRTLDRKTLWEMQTPQ 675
            +L+A G+G R GA  PKQY  + GQP+   +   FSR  +V  +  V +P  S +F          LK   P   G  RQ SV +GL+ +     ++V IHD+ARP V    + + +  A R GAA+  VP   TIK   +   V  T DR  L   QTPQ
Sbjct:   10 VLVAAGRGLRAGAGGPKQYREIGGQPVIYRAMEAFSRHPDVFAVQPVVNPDDSAMFTAAV----AGLKHEPPTNGGATRQASVLAGLEALAKHQPDIVLIHDAARPFVSDGVISRAIDAASRTGAAIPVVPVTDTIKLTGASGNVEDTPDRARLRIAQTPQ 166          
The following BLAST results are available for this feature:
BLAST of FC931379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ISPD_TOLAT2.864e-1534.972-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_SHEHH2.864e-1531.012-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPDF_PARL12.864e-1531.65Bifunctional enzyme ispD/ispF OS=Parvibaculum lava... [more]
ISPD_PSEP13.740e-1534.732-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_AZOSE3.740e-1533.542-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPD_ACTP73.740e-1534.382-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPDF_RHORT3.740e-1532.28Bifunctional enzyme ispD/ispF OS=Rhodospirillum ru... [more]
ISPDF_BRASB3.740e-1533.54Bifunctional enzyme ispD/ispF OS=Bradyrhizobium sp... [more]
ISPD_PSEPK4.884e-1534.732-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
ISPDF_BRAJA4.884e-1536.65Bifunctional enzyme ispD/ispF OS=Bradyrhizobium ja... [more]

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Properties
Property NameValue
Genbank descriptionC34104E04EF PostHarvP1 Citrus clementina cDNA clone C34104E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931379 ID=FC931379; Name=FC931379; organism=Citrus clementina; type=EST; length=750bp
CTGCTTCAGCTGAACCTTGCTCTGTCTTCTTCAACTTCTTCTCTCTCACT
GTTCCCAGACAACCACCAAACTTTCTCCAGAACTGGTCATAAAAATCAGT
TCTTTGGCTTGACAAGGAAGGCCAGGCTTGCAACATCCAGGATTAGATGT
TCTGCTAAAGTTGATAATGGTTCTGTCGTTGTTAAAGATAAGAGTGTATC
AGTTATTCTTTTGGCTGGAGGGAAGGGCAAAAGAATGGGTGCGAACATGC
CAAAGCAGTATCTACCACTTTTGGGTCAACCCATTGCATTGTATAGTTTC
TACACTTTCTCACGCATGGTTGAAGTGAAGGAAATTGTGGTAGTTTGTGA
TCCATCTTACAGTGACATCTTTGAAGAAACCAAAGAGAAGATCAATGTAG
ACCTTAAATTCTCACTTCCGGGGAAGGAGAGGCAAGATTCTGTTTACAGC
GGACTTCAGGAAGTTGATTTTAACTCTGAGCTCGTGTGCATCCATGATTC
TGCTAGACCTTTGGTATTATCTAAAGATGTGCAAAAGGTCCTTATGGATG
CTTTGCGGGTCGGAGCAGCTGTACTTGGTGTTCCTGCCAAAGCTACAATT
AAAGAGGCAAATAGCGAATCTTTTGTGGTTAGAACCCTGGACCGCAAAAC
TCTTTGGGAAATGCAGACCCCTCAGGTGATCAAGCCTGGCTTGCTTAAAA
AGGGTTTGAGCTTGTCATAGGGAAGGTCTTGAAGTACTGATGATGTATCT
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