FC931381

Overview
NameFC931381
Unique NameFC931381
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_SYNP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.768e-41
Identity = 92/200 (46.00%), Postives = 125/200 (62.50%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628
            KLPV F +DRAG+VGADGPTH G +DI ++  +PN+V+MAP DEAEL  M+ T     D     R+PRG+GIGA L  +    PL IGKG IL  GD + ++GYG++V   +  A +L    IS TV +ARF KPLD++LI  LA +   + T EEG  +GGFGS VC  L    +L   + ++   + D  +DH +PA+
Sbjct:  411 KLPVFFCLDRAGIVGADGPTHQGMYDIAYLRLIPNIVLMAPKDEAELQRMLVTGIEYTDGAIAMRYPRGSGIGAPLMEDG-WEPLPIGKGEILRNGDDILLIGYGAMVHSTLQVAEILSEHGISATVINARFVKPLDSELIAPLAKQIGKVATFEEGCLMGGFGSAVCEALQDHDVL---VPVKRFGIGDVLVDHATPAE 606          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_SHESA (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella sp. (strain ANA-3) GN=dxs PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.309e-41
Identity = 94/200 (47.00%), Postives = 125/200 (62.50%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628
            +LPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    D  PS  R+PRG+  GA        T L IGKG I   G  +A+L +G+      LAA +  ++ +  TV D RF KPLD DL++++A  H++L+TVEE ++ GG GS V   L L   L  P  +  + LPD +I HGSP +
Sbjct:  411 RLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSAVRYPRGSATGAT--QVEAMTALPIGKGVIKRLGKGIAMLNFGT-----TLAAALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHDVLVTVEENAIMGGAGSGV---LELLQKLKMPKPVLQIGLPDEFIKHGSPEE 600          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_SHEB8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella baltica (strain OS185) GN=dxs PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.309e-41
Identity = 94/200 (47.00%), Postives = 125/200 (62.50%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628
            +LPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    D  PS  R+PRG   GA        T L IGKG I   G R+AIL +G+     +LA+ +  ++ +  TV D RF KPLD DL++++A  HE+L+TVEE ++ GG G+ V   L     L  P  +  + LPD +I HGSP +
Sbjct:  411 QLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSAVRYPRGCATGAT--QVEAMTALPIGKGVIKRVGKRIAILNFGT-----LLASALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHEVLVTVEENAIMGGAGAGVLEQLQK---LRMPKAVLQIGLPDEFIKHGSPEE 600          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_SHEB2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella baltica (strain OS223) GN=dxs PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.309e-41
Identity = 94/200 (47.00%), Postives = 125/200 (62.50%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628
            +LPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    D  PS  R+PRG   GA        T L IGKG I   G R+AIL +G+     +LA+ +  ++ +  TV D RF KPLD DL++++A  HE+L+TVEE ++ GG G+ V   L     L  P  +  + LPD +I HGSP +
Sbjct:  411 QLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSAVRYPRGCATGAT--QVEAMTALPIGKGVIKRVGKRIAILNFGT-----LLASALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHEVLVTVEENAIMGGAGAGVLEQLQK---LRMPKAVLQIGLPDEFIKHGSPEE 600          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_PROMP (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxs PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.769e-41
Identity = 92/197 (46.70%), Postives = 128/197 (64.97%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPV F +DRAG+VGADGPTH G +DI++M  +PN V+MAP DEAEL  M+ T+ +    P+  R PRG+G+G  +       PL+IG+G IL EGD V I+ YGS+VQ     AN+LK++ IS  + +ARF +PLD DLI  L  + + ++T+EEG+ VGGFGS +   L  + I    L++    +PD  +DH SP
Sbjct:  412 LPVSFVLDRAGIVGADGPTHQGQYDISYMRAIPNFVLMAPKDEAELQRMLITS-INYKGPTALRIPRGSGLGVAVMDEG-WEPLKIGEGEILEEGDDVLIIAYGSMVQSATETANLLKNRGISACIINARFVRPLDQDLIIPLVRKLKKVVTMEEGTLVGGFGSAIVEMLNDNDINIPVLRIG---IPDVLVDHASP 603          

HSP 2 Score: 21.9422 bits (45), Expect = 2.769e-41
Identity = 7/11 (63.64%), Postives = 10/11 (90.91%), Query Frame = 3
Query:    3 DQVVHDVDLQN 35
            DQ++HDV +QN
Sbjct:  401 DQLIHDVGIQN 411          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_NOSP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dxs PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.608e-41
Identity = 93/197 (47.21%), Postives = 121/197 (61.42%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPV F +DRAG+VG+DGPTH G +DI ++ C+PN+V+MAP DEAEL  MV T       P   R+PRGNG G  L       PLEIGK  IL  GD V I+ YG++V   + AA +L    I  TV +ARF KPLDT+LI  LA +   +IT+EEG + GGFGS +   L  + IL   + ++   +PD  +DH  P
Sbjct:  412 LPVFFCLDRAGIVGSDGPTHQGMYDIAYLRCIPNIVIMAPKDEAELQRMVVTGVNHTSGPIAMRYPRGNGHGVPLMEEG-WEPLEIGKSEILRTGDDVLIVAYGTMVYPGMQAAEILSEHGIEATVINARFVKPLDTELILPLAKKIGRVITLEEGCIMGGFGSAIAEALMDADIL---VPVKRFGVPDVLVDHAEP 604          

HSP 2 Score: 21.9422 bits (45), Expect = 3.608e-41
Identity = 7/11 (63.64%), Postives = 10/11 (90.91%), Query Frame = 3
Query:    3 DQVVHDVDLQN 35
            DQ++HDV +QN
Sbjct:  401 DQIIHDVCIQN 411          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_NITMU (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dxs PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.609e-41
Identity = 94/198 (47.47%), Postives = 129/198 (65.15%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPA 625
            LPV FA+DRAGLVGADGPTH G+FD+T++ C+PN+ VMAPSDE E   M+ TA  + + P+  R+PRG+G G       +  PL  G+G I  EG  +A+L +GS++Q C+ AA     ++++ TVA+ RF KPLD DL+  LA  HE+L+TVEE +V GG GS V   L+  G     L+L    LPD ++D G P+
Sbjct:  405 LPVVFAIDRAGLVGADGPTHAGSFDLTYLRCIPNITVMAPSDENECRQMLYTAFQM-NTPAAVRYPRGSGSGVAQQKEMQMLPL--GRGEIRREGAEIALLAFGSMLQPCLEAA-----EELNATVANMRFVKPLDDDLVASLAANHELLVTVEENTVMGGAGSAVLESLSARGRTVPVLQLG---LPDTFLDQGDPS 591          

HSP 2 Score: 21.557 bits (44), Expect = 3.609e-41
Identity = 7/11 (63.64%), Postives = 10/11 (90.91%), Query Frame = 3
Query:    3 DQVVHDVDLQN 35
            DQ++HDV +QN
Sbjct:  394 DQLIHDVAIQN 404          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_BURXL (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia xenovorans (strain LB400) GN=dxs PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 6.124e-41
Identity = 98/203 (48.28%), Postives = 127/203 (62.56%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPA 625
            LPV FA+DRAGLVGADG TH GA+D+ F+ C+PNM VMA SDE E   M+ T A+    P+  R+PRG G G  +    + T L +GKG I  E     G R+AIL +G++V     A ++  ++ +  TVA+ RF KPLD DL+RQLA  H+ ++TVEEG V GG GS     L  SG+    L+L    LPDR+IDHG PA
Sbjct:  407 LPVVFAIDRAGLVGADGATHAGAYDLAFLRCIPNMTVMAASDENECRQMLYT-ALQQPNPTAVRYPRGAGTG--VATIKQMTALPLGKGEIRRETSQPAGKRIAILAFGTMV-----APSLAAAEQLDATVANMRFVKPLDADLVRQLAETHDAIVTVEEGCVMGGAGSACVEALLASGVTRPVLQLG---LPDRFIDHGDPA 598          

HSP 2 Score: 22.3274 bits (46), Expect = 6.124e-41
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:    3 DQVVHDVDLQN 35
            DQ++HDV LQN
Sbjct:  396 DQLIHDVALQN 406          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_SHEPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=dxs PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.719e-41
Identity = 91/198 (45.96%), Postives = 129/198 (65.15%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            +LPV FA+DR G+VGADGPTH GAFD++FM  +PNMV+MAPSDE E   M+ T    +D P+  R+PRG+  GA        T + IGKG I  +G ++AIL +G+     +LA+++  ++ +  TVAD RF KPLD +L++QLA  H++L+TVEE ++ GG GS +   L L   L  P  +  + LPD +I HG+P
Sbjct:  411 RLPVLFAIDRGGIVGADGPTHQGAFDLSFMRIVPNMVIMAPSDENECRQMLYTGYCYNDGPTAVRYPRGSATGA--KQVETMTAMPIGKGLIKRQGKKIAILNFGT-----LLASSLTAAEALDATVADMRFVKPLDVELVKQLAESHDMLVTVEENAIMGGAGSGI---LELLQTLKLPKPVLLIGLPDEFIKHGAP 598          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_VIBSL (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio splendidus (strain LGP32) GN=dxs PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.775e-41
Identity = 96/202 (47.52%), Postives = 132/202 (65.35%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME------GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 619
            LPV FA+DRAGLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T       PS  R+PRGNG+G  +   ++ T LEIGKGRI+ E      G +VAIL +G+ ++  +  A+      I  TVAD RF KPLD  LI+QLA +H++L+T+EE ++ GG G+ V  FL    +L   + + ++ LPD++I  G+
Sbjct:  412 LPVMFAIDRAGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGHQ-HTGPSAVRYPRGNGMGTEI--QSEFTALEIGKGRIVRESKKAKDGSKVAILSFGTFLESALQTADA-----IDATVADMRFVKPLDEALIKQLAADHDVLVTIEENAIAGGAGAGVIEFLMQEKLL---MPVLNLGLPDKFIAQGT 602          
The following BLAST results are available for this feature:
BLAST of FC931381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_SYNP21.768e-4146.001-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_SHESA2.309e-4147.001-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEB82.309e-4147.001-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEB22.309e-4147.001-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_PROMP2.769e-4146.701-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_NOSP73.608e-4147.211-deoxy-D-xylulose-5-phosphate synthase OS=Nostoc ... [more]
DXS_NITMU3.609e-4147.471-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso... [more]
DXS_BURXL6.124e-4148.281-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_SHEPA6.719e-4145.961-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_VIBSL8.775e-4147.521-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]

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Properties
Property NameValue
Genbank descriptionC34104E06EF PostHarvP1 Citrus clementina cDNA clone C34104E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931381 ID=FC931381; Name=FC931381; organism=Citrus clementina; type=EST; length=748bp
ATGATCAGGTTGTGCATGATGTAGACCTTCAAAATTACCAGTCCGCTTTG
CAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCTACTCATTGTGGA
GCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTGGTCATGGC
TCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGCAGCAGTTA
TAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGGAATTGGA
GCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATTGGGAAGGG
AAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTATGGTTCTG
TAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCAAGACATT
TCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATACAGACCT
CATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTGGAAGAGG
GTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAACCTTAAGT
GGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGGTGCTTCCTGATAG
ATACATTGACCATGGATCACCAGCCGATCAGCTTGAAGAATCAGGGCTCT
CCTCAGGCATATCTCTGCAACAGTCTTATCTCTCTTAGGGAGGCCAAAGA
AGCCCTTCTGATTTAAGTATCATACAAATCAAACACATCTTGCCCTTC
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