FC931381

Overview
NameFC931381
Unique NameFC931381
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_BRUA2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella abortus (strain 2308) GN=dxs PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.289e-63
Identity = 119/196 (60.71%), Postives = 148/196 (75.51%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRF +DRAGLVGADGPTH G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+L  EHE+L+ VEEG+VGGF SHV  FL   G+LD  LK+R+++LPD Y DHG P
Sbjct:  412 LPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLVREHEVLVMVEEGAVGGFSSHVLQFLATDGLLDRGLKVRALMLPDIYQDHGKP 605          

HSP 2 Score: 23.8682 bits (50), Expect = 1.289e-63
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3
Query:    3 DQVVHDVDLQN 35
            DQVVHDV +QN
Sbjct:  401 DQVVHDVSIQN 411          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_BRASO (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain ORS278) GN=dxs PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.146e-63
Identity = 117/197 (59.39%), Postives = 150/197 (76.14%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPA 625
            LPVRFA+DRAGLVGADG TH G+FD  ++ CLPNMV+MA SDEAEL+HMVAT   IDDRPS  R+PRG G G  +P    G  L IGKGR++ +G +VA+L +G+ + +C  AA+ L +  +S ++ADARF KPLD +L+ +LA +HEILIT+EEGS+GGFGSHV  +L   G+LDG LK+RSMVLPD + DH +PA
Sbjct:  414 LPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAASDEAELVHMVATQVAIDDRPSSVRYPRGEGRGVEMP--EVGVALPIGKGRMIRQGKQVALLSFGTRLAECEKAADELAAHGLSASIADARFMKPLDEELVLKLARDHEILITIEEGSIGGFGSHVMQYLADQGMLDGGLKMRSMVLPDEFQDHDTPA 608          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_BARHE (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella henselae GN=dxs PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.146e-63
Identity = 116/196 (59.18%), Postives = 152/196 (77.55%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 619
            KLPVRFA+DRAG VGADG TH G+FDI F++ LP  VVMAPSDE ELMHMV TAA  D  P  FR+PRG GIG  LP   +G  LEIGKGRIL EG+R+A++ +G+ + + ++AA+ L ++ +S TVADARF KPLD DL+R+LA EHE+L+T+EEG++GGFG+H+  FL   G+L+  LK+R++ LPD Y++HGS
Sbjct:  412 KLPVRFAIDRAGFVGADGATHAGSFDIVFLTTLPEFVVMAPSDEVELMHMVRTAAAYDQGPISFRYPRGEGIGMDLP--QRGEILEIGKGRILHEGNRIALVCFGTRISEVLVAADELSAEGLSTTVADARFAKPLDKDLMRRLAREHEVLVTIEEGAIGGFGAHLLQFLAQEGLLEHGLKVRTLKLPDEYLNHGS 605          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_RHOPB (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=dxs PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.803e-63
Identity = 115/196 (58.67%), Postives = 151/196 (77.04%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRFA+DRAGLVGADG TH G+FD  F+ CLPNMV+MA SDEAEL+HMVAT   I+DRPS  R+PRG G G  +P    G  LEIGKGRI+ EG+++A+L +G+ + +C  AA+ L +  +S T+ADARF KPLD +L+ +LA +HEIL+T+EEGS+GGFGSHV   L   G+LDG +++RS+VLPD ++DH +P
Sbjct:  414 LPVRFAIDRAGLVGADGATHAGSFDNAFLGCLPNMVIMAASDEAELVHMVATQVAINDRPSAVRYPRGEGRGVEMP--EVGIALEIGKGRIVREGNKIALLSFGTRLAECEKAADELATLGLSTTIADARFMKPLDVELVLKLARDHEILLTIEEGSIGGFGSHVMQTLAEHGMLDGEVRMRSLVLPDEFMDHDTP 607          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_RHOP5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=dxs PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.803e-63
Identity = 115/197 (58.38%), Postives = 151/197 (76.65%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPA 625
            LPVRFA+DRAGLVGADG TH G+FD  ++ CLPN V+MA SDEAEL+HMVAT   I+D PS  R+PRG G G  +P    G PLEIGKGR++ +G+++A+L +G+ + +C  AA+ L +  +S TVADARF KPLD +L+ +LA EHE+LITVEEGS+GGFGSHV   L   G+LDG +++RS+VLPD ++DH +PA
Sbjct:  414 LPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNFVIMAASDEAELVHMVATQVAINDAPSAVRYPRGEGRGVEMP--EVGIPLEIGKGRVVRQGNKIALLSFGTRLAECEKAADELATLGLSTTVADARFMKPLDVELVLKLAREHEVLITVEEGSIGGFGSHVMQTLAEHGMLDGEVRMRSLVLPDEFMDHDTPA 608          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_RHOPT (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.781e-63
Identity = 114/197 (57.87%), Postives = 152/197 (77.16%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            KLPVRFA+DRAGLVGADG TH G+FD  ++ CLPNMV+MA +DEAEL+HMVAT   IDDRPS  R+PRG G G  +P    G PLEIGKGR++ +G++VA+L +G+ + +   AA+ L +  +S TVADARF KPLD +L+ +LA +HE+L+T+EEGS+GGFGSHV   L   G+LDG +K+R++VLPD ++DH +P
Sbjct:  413 KLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAAADEAELVHMVATQVAIDDRPSAVRYPRGEGRGVEMP--EVGIPLEIGKGRVIRQGNKVALLSFGTRLAEAEKAADELATLGLSTTVADARFMKPLDVELVLKLARDHEVLLTIEEGSIGGFGSHVMQTLAEHGMLDGEVKMRALVLPDVFMDHDNP 607          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_RHOPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris GN=dxs PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.781e-63
Identity = 114/197 (57.87%), Postives = 152/197 (77.16%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            KLPVRFA+DRAGLVGADG TH G+FD  ++ CLPNMV+MA +DEAEL+HMVAT   IDDRPS  R+PRG G G  +P    G PLEIGKGR++ +G++VA+L +G+ + +   AA+ L +  +S TVADARF KPLD +L+ +LA +HE+L+T+EEGS+GGFGSHV   L   G+LDG +K+R++VLPD ++DH +P
Sbjct:  413 KLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAAADEAELVHMVATQVAIDDRPSAVRYPRGEGRGVEMP--EVGIPLEIGKGRVIRQGNKVALLSFGTRLAEAEKAADELATLGLSTTVADARFMKPLDVELVLKLARDHEVLLTIEEGSIGGFGSHVMQTLAEHGMLDGEVKMRALVLPDVFMDHDNP 607          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_BART1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=dxs PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.156e-63
Identity = 115/197 (58.38%), Postives = 151/197 (76.65%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            KLPVRFA+DRAG VGADG TH G+FDI F++ LP  VVMAPSDE ELMHMV TAA  D  P  FR+PRG GIG  LP   +G  LEIGKGR+L EG+R+A++ +G+ + + + AA+ L ++ +S TVADARF KPLD DL+R+LA EHE+L+T+EEG++GGFG+H+  FL   G+L+  LK+R++  PD Y++HGSP
Sbjct:  412 KLPVRFAIDRAGFVGADGATHAGSFDIVFLATLPEFVVMAPSDELELMHMVRTAAAYDQGPISFRYPRGEGIGIDLP--QRGEILEIGKGRVLREGNRIALVCFGTRMSEVLRAADRLGAKGLSTTVADARFAKPLDKDLMRRLAREHEVLVTIEEGAIGGFGAHLLQFLAQEGLLEHGLKVRTLKFPDEYLNHGSP 606          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS1_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Jannaschia sp. (strain CCS1) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.817e-62
Identity = 121/199 (60.80%), Postives = 150/199 (75.38%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628
            +LPVRFA+DRAGLVGADG TH G++DI++++ LP  VVMA +DEAEL HMV TA  IDDRPS FRFPRG G+G  +P  ++GT LEIGKGR++ EG+RVAIL +G+ +++   AA  L  + I+ T+ADARF KPLD  LI QLA  HE LITVEEG+VGGFGSHV H L  + + D  +K RSMVLPD +ID  SP D
Sbjct:  414 RLPVRFAIDRAGLVGADGCTHAGSYDISYLANLPGFVVMAAADEAELRHMVRTALEIDDRPSAFRFPRGEGMGVDMP--DRGTALEIGKGRMISEGNRVAILNFGTRLKEVQEAAETLSQRGITPTIADARFAKPLDEALILQLARHHEALITVEEGAVGGFGSHVAHLLAENAVFDTGIKYRSMVLPDIFIDQASPKD 610          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_BARQU (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella quintana GN=dxs PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.373e-62
Identity = 115/197 (58.38%), Postives = 150/197 (76.14%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            KLPVRFA+DRAG VGADG TH G+FDI F++ LP  VVMAPSDE ELMHMV TAA  D  P  FR+PRG G+G  LP   +G  LEIGKGR+L EG RVA++ +G+ + + ++AA+ L ++ +S TVADARF KPLD DL+R+LA EHE+L+ VEEG++GGFG+H+  FL   G+L+  LK+R++  PD Y++HGSP
Sbjct:  412 KLPVRFAIDRAGFVGADGATHAGSFDIVFLATLPEFVVMAPSDEVELMHMVRTAAAYDQGPISFRYPRGEGVGMDLP--QRGELLEIGKGRVLREGSRVALVCFGTRMSEVLVAADALIAEGLSTTVADARFAKPLDKDLMRRLACEHEVLVAVEEGAIGGFGAHLLQFLAKEGLLEHGLKVRTLKFPDEYLNHGSP 606          
The following BLAST results are available for this feature:
BLAST of FC931381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_BRUA21.289e-6360.711-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRASO2.146e-6359.391-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]
DXS_BARHE2.146e-6359.181-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_RHOPB2.803e-6358.671-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOP52.803e-6358.381-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOPT4.781e-6357.871-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOPA4.781e-6357.871-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_BART18.156e-6358.381-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS1_JANSC1.817e-6260.801-deoxy-D-xylulose-5-phosphate synthase 1 OS=Janna... [more]
DXS_BARQU2.373e-6258.381-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]

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Properties
Property NameValue
Genbank descriptionC34104E06EF PostHarvP1 Citrus clementina cDNA clone C34104E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931381 ID=FC931381; Name=FC931381; organism=Citrus clementina; type=EST; length=748bp
ATGATCAGGTTGTGCATGATGTAGACCTTCAAAATTACCAGTCCGCTTTG
CAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCTACTCATTGTGGA
GCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTGGTCATGGC
TCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGCAGCAGTTA
TAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGGAATTGGA
GCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATTGGGAAGGG
AAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTATGGTTCTG
TAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCAAGACATT
TCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATACAGACCT
CATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTGGAAGAGG
GTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAACCTTAAGT
GGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGGTGCTTCCTGATAG
ATACATTGACCATGGATCACCAGCCGATCAGCTTGAAGAATCAGGGCTCT
CCTCAGGCATATCTCTGCAACAGTCTTATCTCTCTTAGGGAGGCCAAAGA
AGCCCTTCTGATTTAAGTATCATACAAATCAAACACATCTTGCCCTTC
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