FC931381

Overview
NameFC931381
Unique NameFC931381
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_RHIME (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium meliloti GN=dxs PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.634e-61
Identity = 114/196 (58.16%), Postives = 145/196 (73.98%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRF +DRAG VGADGPTH G+FD T+++ LP  VVMA +DEAEL HMV TAA  D+ P  FR+PRG G+G  LP   +G  L IGKGRI+ +G++VA+L +G+ +  C+LAA  L +  +S TVADARF KPLD DLIRQLA  HE+LIT+EEG+VGGF SHV  FL   G++DG LK+R MV+PD +++   P
Sbjct:  418 LPVRFPIDRAGFVGADGPTHAGSFDTTYLATLPGFVVMAAADEAELKHMVRTAAAYDEGPISFRYPRGEGVGVELP--ERGEILAIGKGRIVKQGNKVALLSFGTRLADCLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQLARHHEVLITIEEGAVGGFASHVLQFLAEEGLIDGGLKVRPMVMPDIWMEQAKP 611          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_NITHX (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dxs PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.970e-61
Identity = 113/197 (57.36%), Postives = 147/197 (74.62%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILD-GPLKLRSMVLPDRYIDHGSP 622
            LPVRFA+DRAGLVGADG TH G+FD  ++ CLPN V+MA SDEAEL+HMVAT   I+DRPS  R+PRG G G  +P    G PL IGKGRI+ +G +VA+L  G+ + +C  AA+ L +  +S T+ADARF KPLD DL+ +LA +H++LIT+EEGS+GGFGSHV   L   G LD G +++R+MVLPD ++DH +P
Sbjct:  440 LPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNFVIMAASDEAELVHMVATQVAINDRPSAVRYPRGEGRGVEMP--EVGVPLPIGKGRIVRQGSKVALLSLGTRLAECEKAADELAAHGLSTTIADARFMKPLDVDLVLKLARDHDVLITIEEGSIGGFGSHVMQTLAEHGALDSGQVRVRAMVLPDEFLDHDTP 634          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_PHEZH (1-deoxy-D-xylulose-5-phosphate synthase OS=Phenylobacterium zucineum (strain HLK1) GN=dxs PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.901e-60
Identity = 117/196 (59.69%), Postives = 143/196 (72.96%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRFA+DRAGLVGADGPTH G+FD+ FM  LP MVVM P+DEAEL   +ATA  IDDRPS FR+PRG G+G  +P      PLEIG+GRI+ EG  VAIL +G+ + + + AA+ML ++ +S TVADARF KPLD DL+ +LA EHE LITVEEG+VGGFG  V H L   G LD  LK+R++ LPD + D   P
Sbjct:  411 LPVRFAIDRAGLVGADGPTHAGSFDVGFMGQLPGMVVMGPADEAELARAIATAVAIDDRPSAFRYPRGEGVGVEIPA--LADPLEIGRGRIVREGTAVAILSFGTRLGESLKAADMLAARGLSATVADARFAKPLDVDLLLRLAREHEALITVEEGAVGGFGGFVLHALAEHGALDRGLKIRTLTLPDIFQDQDKP 604          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_MARMM (1-deoxy-D-xylulose-5-phosphate synthase OS=Maricaulis maris (strain MCS10) GN=dxs PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.789e-60
Identity = 118/199 (59.30%), Postives = 147/199 (73.87%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628
            KLPVRFA+DRAGLVGADG TH G+FDI ++  LP MV+MA +DE EL  MV TAA+IDD PS FR+PRGNG G  +P   +  PLEIGKGRI+ EG R+AIL  G+ +++ + AA+ L +Q  S TVADARF KPLD DLI +LA EHE+LITVEEG+VGGFG+ V H L   G LD  L++R++ LPD + D  +P D
Sbjct:  410 KLPVRFAIDRAGLVGADGATHAGSFDIGYLGALPGMVLMAAADELELSRMVKTAALIDDGPSAFRYPRGNGTGIEIPDQIE--PLEIGKGRIVREGSRIAILSLGTRLEESLKAADALAAQGFSTTVADARFAKPLDEDLILRLAREHEVLITVEEGAVGGFGAFVLHMLADKGALDRGLRIRTLTLPDVFQDQEAPFD 606          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_RHIE6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CIAT 652) GN=dxs PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.102e-59
Identity = 114/196 (58.16%), Postives = 144/196 (73.47%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRF +DRAG VGADGPTH G+FD  F++ LP  VVMA +DEAEL HMV TA   D  P  FR+PRG G+G  +P   +G  L+IGKGRI+ EG +VA+L +G+ +  C+LAA  L++  +S TVADARF KPLD DLIRQLA  HE+LITVEEGSVGGFGS V  +L+  G+LD  LK+RS+V+PD +++   P
Sbjct:  413 LPVRFPIDRAGFVGADGPTHAGSFDTAFLATLPGFVVMAAADEAELKHMVRTAVAYDAGPISFRYPRGEGVGVDMPA--RGEILQIGKGRIVKEGTKVALLSFGTRLADCLLAAEDLEAAGLSTTVADARFAKPLDHDLIRQLARHHEMLITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKP 606          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_AGRVS (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dxs PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.102e-59
Identity = 114/196 (58.16%), Postives = 142/196 (72.45%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRF +DRAG VGADGPTH G+FD  F++ LP  VVMA +DEAEL HMV TAA  D+ P  FR+PRG G+G  +P   +G  L IGKGRI+ EG +VA+L +G+ + +C++AA  L +  +  TVADARF KPLD DLIRQLA  H +LITVEEG+VGGFGS V H L   G+LD  LK+RS+VLPD ++D   P
Sbjct:  413 LPVRFPIDRAGFVGADGPTHAGSFDTGFLASLPGFVVMAAADEAELKHMVRTAAAYDEGPISFRYPRGEGVGVQMP--ERGEILPIGKGRIIKEGSKVALLSFGTRLAECLVAAEDLDAAGLPTTVADARFAKPLDLDLIRQLARHHAVLITVEEGAVGGFGSQVLHMLANEGLLDHGLKVRSLVLPDLWMDQAKP 606          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_SILST (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter sp. (strain TM1040) GN=dxs PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.456e-59
Identity = 119/199 (59.80%), Postives = 143/199 (71.86%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628
            +LPVRFA+DRAGLVGADG TH G+FDI FM+ LP MVVMA +DEAEL HMVATAA  D  P  FR+PRG G G  +P   +   LEIGKGRI+ EG RVA+L +G+ + +   AA  L ++ I+ TVADARF KPLD D+I  LA +HE LIT+EEG+VGGFGSHV   L+   + D  LK RSMVLPD +ID  SP D
Sbjct:  416 RLPVRFAIDRAGLVGADGATHAGSFDIAFMANLPGMVVMAAADEAELKHMVATAAAYDAGPIAFRYPRGEGEGVEMPEQPE--VLEIGKGRIIEEGSRVALLSFGTRLGEVRKAAEALAARGITPTVADARFAKPLDRDMILSLAEKHEALITIEEGAVGGFGSHVAQLLSEEAVFDTGLKFRSMVLPDTFIDQASPKD 612          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_RHIEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dxs PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.189e-59
Identity = 112/196 (57.14%), Postives = 145/196 (73.98%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRF +DRAG VGADGPTH G+FD  F++ LP  VVMA +DEAEL HMV TAA  D  P  FR+PRG G+G  +P   +G  L+IGKGRI+ EG +VA+L +G+ +  C+LA+  L++  +S TVADARF KPLD +L+RQLA  HE+LITVEEGSVGGFGS V  +L+  G+LD  LK+RS+V+PD +++   P
Sbjct:  413 LPVRFPIDRAGFVGADGPTHAGSFDTAFLATLPGFVVMAAADEAELKHMVRTAAAYDAGPISFRYPRGEGVGVDMPA--RGEILQIGKGRIVKEGTKVALLSFGTRLADCLLASEDLEAAGLSTTVADARFAKPLDHELLRQLARHHEMLITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKP 606          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_CAUCR (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus GN=dxs PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 9.332e-59
Identity = 116/196 (59.18%), Postives = 144/196 (73.47%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRFAMDRAGLVGADGPTH G+FDI FM  LP MV+MA +DE EL  MVATAA IDDRPS FR+PRG G+G  +P   +  PLEIGKGRI+ EG  VAI+ +G+ + + + AA++L ++ +S TV DARF KPLD DL+ +LA EHE +ITVEEGS+GGFG+ V   L   G LD  LK+R++ LPD + D   P
Sbjct:  411 LPVRFAMDRAGLVGADGPTHAGSFDIGFMGALPGMVLMAAADEVELARMVATAAEIDDRPSAFRYPRGEGLGLDMPAIAE--PLEIGKGRIVREGTSVAIVSFGTRLSESLKAADLLAARGLSATVCDARFAKPLDLDLLLRLAREHEAIITVEEGSMGGFGAFVLQALAQHGALDRGLKIRTLCLPDVFQDQDKP 604          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_CAUCN (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=dxs PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 9.332e-59
Identity = 116/196 (59.18%), Postives = 144/196 (73.47%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRFAMDRAGLVGADGPTH G+FDI FM  LP MV+MA +DE EL  MVATAA IDDRPS FR+PRG G+G  +P   +  PLEIGKGRI+ EG  VAI+ +G+ + + + AA++L ++ +S TV DARF KPLD DL+ +LA EHE +ITVEEGS+GGFG+ V   L   G LD  LK+R++ LPD + D   P
Sbjct:  411 LPVRFAMDRAGLVGADGPTHAGSFDIGFMGALPGMVLMAAADEVELARMVATAAEIDDRPSAFRYPRGEGLGLDMPAIAE--PLEIGKGRIVREGTSVAIVSFGTRLSESLKAADLLAARGLSATVCDARFAKPLDLDLLLRLAREHEAIITVEEGSMGGFGAFVLQALAQHGALDRGLKIRTLCLPDVFQDQDKP 604          
The following BLAST results are available for this feature:
BLAST of FC931381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_RHIME7.634e-6158.161-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_NITHX9.970e-6157.361-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]
DXS_PHEZH2.901e-6059.691-deoxy-D-xylulose-5-phosphate synthase OS=Phenylo... [more]
DXS_MARMM3.789e-6059.301-deoxy-D-xylulose-5-phosphate synthase OS=Maricau... [more]
DXS_RHIE61.102e-5958.161-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_AGRVS1.102e-5958.161-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS_SILST2.456e-5959.801-deoxy-D-xylulose-5-phosphate synthase OS=Silicib... [more]
DXS_RHIEC4.189e-5957.141-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_CAUCR9.332e-5959.181-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_CAUCN9.332e-5959.181-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]

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Properties
Property NameValue
Genbank descriptionC34104E06EF PostHarvP1 Citrus clementina cDNA clone C34104E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931381 ID=FC931381; Name=FC931381; organism=Citrus clementina; type=EST; length=748bp
ATGATCAGGTTGTGCATGATGTAGACCTTCAAAATTACCAGTCCGCTTTG
CAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCTACTCATTGTGGA
GCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTGGTCATGGC
TCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGCAGCAGTTA
TAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGGAATTGGA
GCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATTGGGAAGGG
AAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTATGGTTCTG
TAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCAAGACATT
TCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATACAGACCT
CATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTGGAAGAGG
GTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAACCTTAAGT
GGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGGTGCTTCCTGATAG
ATACATTGACCATGGATCACCAGCCGATCAGCTTGAAGAATCAGGGCTCT
CCTCAGGCATATCTCTGCAACAGTCTTATCTCTCTTAGGGAGGCCAAAGA
AGCCCTTCTGATTTAAGTATCATACAAATCAAACACATCTTGCCCTTC
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