FC931381

Overview
NameFC931381
Unique NameFC931381
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_STRC1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Streptomyces sp. (strain CL190) GN=dxs PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.238e-19
Identity = 59/194 (30.41%), Postives = 103/194 (53.09%), Query Frame = 2
Query:   41 VRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDR--VAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDH 613
            V F +DRAG+ G DG +H G +D++ +  +P + + AP D   +   +  A  +DD P+  RFP+   +G  +P  ++     +G   +L   +R  V ++  G + Q C+  A +L+++ I  TV D R+ KP+D  ++  LA EH ++  VE+ S   G GS V   L   G  D  + +R   +P++++ H
Sbjct:  411 VTFVLDRAGVTGVDGASHNGMWDMSVLQVVPGLRIAAPRDADHVRAQLREAVAVDDAPTLIRFPK-ESVGPRIPALDR-----VGGLDVLHRDERPEVLLVAVGVMAQVCLQTAELLRARGIGCTVVDPRWVKPVD-PVLPPLAAEHRLVAVVEDNSRAAGVGSAVALAL---GDADVDVPVRRFGIPEQFLAH 594          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_CHLPN (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia pneumoniae GN=dxs PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.238e-19
Identity = 61/199 (30.65%), Postives = 98/199 (49.25%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPR---GNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 619
            LPV FA+DRAGL   DG +H G +D++F+  +P M++  P  +     ++ ++      PS  R+P     +G      PN   +P   G    L +G+ V I+  G++    +   + L +  IS TV D  F KP D DL   L   H  +IT+EE S+ GG  S   +F+      +  + + +  +PD ++ HGS
Sbjct:  416 LPVIFAIDRAGLAYGDGRSHHGIYDMSFLRAMPQMIICQPRSQVVFQQLLYSSLHWSS-PSAIRYPNIPAPHGDPLTGDPNFLRSP---GNAETLSQGEDVLIIALGTLCFTALSIKHQLLAYGISATVVDPIFIKPFDNDLFSLLLMSHSKVITIEEHSIRGGLASEFNNFV---ATFNFKVDILNFAIPDTFLSHGS 607          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_CLAMS (1-deoxy-D-xylulose-5-phosphate synthase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.535e-19
Identity = 60/195 (30.77%), Postives = 102/195 (52.31%), Query Frame = 2
Query:   41 VRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDR-VAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 619
            V F +DRAG+ G DGP+H G +D+  +  +P++ + AP D   L   +  A  +DD P+  RF +G+ +G  +    +   L+ G   +     + V I+  G +    +  A  L +Q I  TV D R+  P+   ++ +L   H +++T+E+G  VGG G+ +   L  +GI  G  +L    LPD ++DHG+
Sbjct:  413 VTFVLDRAGVTGPDGPSHHGMWDLALLQIVPHIRLSAPRDATRLREELGEAVKVDDAPTVVRFSKGS-VGDEIEAVRR---LDDGVDVLHESASKDVLIVTVGPMATMGIEVAERLAAQGIGATVVDPRWVVPVPRSVV-ELGGTHRLVVTIEDGVVVGGIGTRIRQDLREAGIDTGVTELG---LPDEFLDHGT 599          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_SACEN (1-deoxy-D-xylulose-5-phosphate synthase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.228e-19
Identity = 60/195 (30.77%), Postives = 98/195 (50.26%), Query Frame = 2
Query:   38 PVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 619
            PV   +DR+G+ G DG +H G +D++ +  +P + V AP D   L   +  A  +DD P+  RFP+G+ I  V P   +   +++       E   V +   G+  Q  V  A  L +Q I VTV D R+  P+    +  LA  H +++T+E+ G  GGFG  +   +    I    + LR + +P+R++ H S
Sbjct:  410 PVTVTLDRSGITGDDGASHNGMWDLSILGAIPGIQVAAPRDAVTLREELREAVAVDDGPTVMRFPKGSVIEEV-PAVERIGGVDVLSKPASDERSEVLLAAVGAFGQLGVAVAERLAAQGIGVTVVDPRWVVPV-PQAVLDLAARHSLVVTLEDCGRHGGFGWSLAAAMRDQEI---DVPLRDLAVPNRFLQHAS 599          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_LEIXX (1-deoxy-D-xylulose-5-phosphate synthase OS=Leifsonia xyli subsp. xyli GN=dxs PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.228e-19
Identity = 62/199 (31.16%), Postives = 100/199 (50.25%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDR--VAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 619
            K  V F +DRAG+ G DGP+H G +D+  +  +P + + AP D       +A A  + D P+  RFP+G+     +P + +          +L E D+  V ++  G +    +  A  L +Q I  TV D R+  P+   ++  LA  H I++T+E+G  VGG G+ V   L  +GI      +  + LPD +IDH +
Sbjct:  410 KAGVTFVLDRAGVTGPDGPSHHGIWDLAILQVVPGIRLAAPRDATRFREELAEAVAVADAPTVLRFPKGS-----VPADIEAVRRRDDGVDVLHESDQKDVLLVTVGPMAGLGLRVAEALAAQGIGATVVDPRWVVPVPRSVL-DLAAGHRIVVTMEDGIRVGGIGTRVRQDLREAGI---DTAVDELGLPDEFIDHAT 599          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_CHLFF (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydophila felis (strain Fe/C-56) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.228e-19
Identity = 61/195 (31.28%), Postives = 94/195 (48.21%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHG 616
            LPV  A+DRAGL   DG +H G +DI+F+  +PNM++  P   A ++  +  +++  + PS  R+P    I       +     + G G IL +G+ + I+G G +    +     L +  IS TV D  F KP D +L   L   H  +I +EE S+ GG  S    FL   G     + +    +PD +  HG
Sbjct:  415 LPVILAIDRAGLAYGDGCSHHGIYDISFLRAMPNMIICQPR-SAIVLQQLLQSSLQWNMPSAIRYPNIAAIQRDPIATDVNMHRDPGLGEILSQGEDILIIGLGHMCNTALSIKLQLLTHGISATVVDPVFIKPFDNNLFSILLMHHSKVIIIEEHSIRGGLASEFNDFLATYGF---KVDVLHFGIPDAFFSHG 605          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS1_STRAW (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Streptomyces avermitilis GN=dxs1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.228e-19
Identity = 59/197 (29.95%), Postives = 104/197 (52.79%), Query Frame = 2
Query:   41 VRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628
            V F +DRAG+ G DG +H G +D++ +  +P + + AP D  +L   +  A  +DD P+  RFP+   +G  +P  +    +++       E  +V ++  G +   C+ AA +L+++ I  TV D R+ KP+D  L   LA EH ++  VE+ S   G G+ V   L LS   +  + +R   +P++++ H   A+
Sbjct:  411 VTFVLDRAGVTGVDGASHNGMWDMSILQVVPGLRIAAPRDADQLRAQLREAVAVDDAPTLLRFPK-ESVGPAIPAVDHVGGMDV--LHRFPESPQVLLVAVGVMAPVCLQAAELLEARGIGCTVVDPRWVKPVDPSL-PGLAAEHRLVAVVEDNSRAAGVGAAVA--LALSD-AEVDVPVRRFGIPEQFLAHAKRAE 600          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_NOCFA (1-deoxy-D-xylulose-5-phosphate synthase OS=Nocardia farcinica GN=dxs PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.747e-18
Identity = 62/202 (30.69%), Postives = 106/202 (52.48%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEI-----GKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 619
            K PV   +DRAG+ G DG +H G +D++ +  +P + V AP D A L   +  A  + D P+  RFP+G+ +   L    +   +++      +  +  +   V I+  G   +  + AA +L  + +SVTV D R+  P+ +D + +LA  + +++T+E+ G  GG GS V   L   G LD P   R + +P +++DH S
Sbjct:  409 KQPVTVVLDRAGITGPDGASHNGMWDLSLLGIIPGIRVAAPRDAATLREELGEALAVTDGPTVLRFPKGS-VAEDLTAVERIDGVDVLRAADPESAVRTQRGDVLIVAVGPFARIGLAAAELLAPEGVSVTVVDPRWVLPV-SDTVVKLAENYRLVVTLEDSGLHGGIGSTVSARLRSVG-LDVP--TRDLGVPQQFLDHAS 605          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_LEPBL (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.685e-18
Identity = 52/158 (32.91%), Postives = 81/158 (51.27%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV 508
            LPVRF +DRAG VG DG TH G FD+ ++  LPNM V  PS+  +++  +      D  P   RFP+ N +        K   L  G  R+L  G  +A+L  GS++ +   A  +L+S   SVT+ D  + +PL  + + +  +     + ++E  V
Sbjct:  414 LPVRFVIDRAGCVGPDGETHQGLFDLGYLLGLPNMDVFVPSNGQDMIDSLRWMETYDKAPIAIRFPKAN-VDLKTLDFYKEVDLRPGTFRVLKRGTDLALLSIGSMIDEAKKATEILESAGFSVTLIDLIWLRPLGVEALNEELSNVRRFVIIDESYV 570          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_LEPBJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.685e-18
Identity = 52/158 (32.91%), Postives = 81/158 (51.27%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV 508
            LPVRF +DRAG VG DG TH G FD+ ++  LPNM V  PS+  +++  +      D  P   RFP+ N +        K   L  G  R+L  G  +A+L  GS++ +   A  +L+S   SVT+ D  + +PL  + + +  +     + ++E  V
Sbjct:  414 LPVRFVIDRAGCVGPDGETHQGLFDLGYLLGLPNMDVFVPSNGQDMIDSLRWMETYDKAPIAIRFPKAN-VDLKTLDFYKEVDLRPGTFRVLKRGTDLALLSIGSMIDEAKKATEILESAGFSVTLIDLIWLRPLGVEALNEELSNVRRFVIIDESYV 570          
The following BLAST results are available for this feature:
BLAST of FC931381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_STRC14.238e-1930.411-deoxy-D-xylulose-5-phosphate synthase OS=Strepto... [more]
DXS_CHLPN4.238e-1930.651-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_CLAMS5.535e-1930.771-deoxy-D-xylulose-5-phosphate synthase OS=Claviba... [more]
DXS_SACEN7.228e-1930.771-deoxy-D-xylulose-5-phosphate synthase OS=Sacchar... [more]
DXS_LEIXX7.228e-1931.161-deoxy-D-xylulose-5-phosphate synthase OS=Leifson... [more]
DXS_CHLFF7.228e-1931.281-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS1_STRAW7.228e-1929.951-deoxy-D-xylulose-5-phosphate synthase 1 OS=Strep... [more]
DXS_NOCFA2.747e-1830.691-deoxy-D-xylulose-5-phosphate synthase OS=Nocardi... [more]
DXS_LEPBL4.685e-1832.911-deoxy-D-xylulose-5-phosphate synthase OS=Leptosp... [more]
DXS_LEPBJ4.685e-1832.911-deoxy-D-xylulose-5-phosphate synthase OS=Leptosp... [more]

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Properties
Property NameValue
Genbank descriptionC34104E06EF PostHarvP1 Citrus clementina cDNA clone C34104E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931381 ID=FC931381; Name=FC931381; organism=Citrus clementina; type=EST; length=748bp
ATGATCAGGTTGTGCATGATGTAGACCTTCAAAATTACCAGTCCGCTTTG
CAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCTACTCATTGTGGA
GCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTGGTCATGGC
TCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGCAGCAGTTA
TAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGGAATTGGA
GCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATTGGGAAGGG
AAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTATGGTTCTG
TAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCAAGACATT
TCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATACAGACCT
CATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTGGAAGAGG
GTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAACCTTAAGT
GGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGGTGCTTCCTGATAG
ATACATTGACCATGGATCACCAGCCGATCAGCTTGAAGAATCAGGGCTCT
CCTCAGGCATATCTCTGCAACAGTCTTATCTCTCTTAGGGAGGCCAAAGA
AGCCCTTCTGATTTAAGTATCATACAAATCAAACACATCTTGCCCTTC
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