FC931381
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_AZOC5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dxs PE=3 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 9.332e-59 Identity = 114/197 (57.87%), Postives = 137/197 (69.54%), Query Frame = 2 Query: 35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPA 625 LPVRFA+DRAGLVGADG TH GAFD+ ++CLP VMAP+DEAEL HM+ATA D P FRFPRG G+G P KG L IGKGR++ EG +A L G+ + C+ A L S IS TVADARF KP+D +LI LA H L+ VEEGSVGGFGS V FL+ G++DG LK+R++ LPD YIDH +PA Sbjct: 412 LPVRFAIDRAGLVGADGATHAGAFDLAMLTCLPGFTVMAPADEAELTHMIATAVGHDAGPIAFRFPRGEGVGVERP--EKGERLPIGKGRVVREGQDIAFLSLGTRLAACLDVAERLSSLGISATVADARFAKPIDRELIAHLARTHAALVVVEEGSVGGFGSQVLQFLSDEGLMDGGLKVRALTLPDTYIDHDTPA 606
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_PELUB (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelagibacter ubique GN=dxs PE=3 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 1.592e-58 Identity = 111/196 (56.63%), Postives = 146/196 (74.49%), Query Frame = 2 Query: 35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622 LPVRF +DRAGLVGADG TH G+FDIT++S LPN +VMAPSDEAEL+ M T+ I+++P R+PRGNGIG LP ++ +EIGKGR++ EG +V IL G+ +++C +AA LK++ I T+ DARF KPLD +LI + A EHE +ITVEEGS+GGFGSHV + L+ GI D LK R+M+LPD +I+ SP Sbjct: 411 LPVRFIIDRAGLVGADGSTHAGSFDITYLSTLPNFIVMAPSDEAELVKMTNTSMTINNKPCAIRYPRGNGIGVELPSIDEN--IEIGKGRVIQEGKQVCILSIGTRLEECKIAAAELKNKGIESTIVDARFAKPLDQELILKCAREHEAMITVEEGSIGGFGSHVENLLSEKGIFDKGLKFRTMILPDIFIEQDSP 604
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_AGRRK (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=dxs PE=3 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 1.592e-58 Identity = 112/196 (57.14%), Postives = 142/196 (72.45%), Query Frame = 2 Query: 35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622 LPVRF +DRAG VGADGPTH G+FD TF++ LP VVMA +DEAEL HMV TAA D P FR+PRG G+G +P +G LEIGKGRI+ +G +VA+L +G+ + + AA L + + TVADARF KPLD DLIRQLA+ HE+LIT+EEGSVGGFGS V FL G+LD LK+R++V+PD +++ P Sbjct: 413 LPVRFPIDRAGFVGADGPTHAGSFDTTFLATLPGFVVMAAADEAELKHMVRTAAAYDLGPISFRYPRGEGVGIEMP--ERGQILEIGKGRIVKQGSKVALLSFGTRLADSLAAAEDLDAAGLPTTVADARFAKPLDHDLIRQLASHHEVLITIEEGSVGGFGSQVMQFLASEGLLDNGLKIRTLVMPDIWVEQAKP 606
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_RHILW (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dxs PE=3 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 2.715e-58 Identity = 112/196 (57.14%), Postives = 141/196 (71.94%), Query Frame = 2 Query: 35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622 LPVRF +DRAG VGADGPTH G+FD F++ LP VVMA +DEAEL HMV TA D P FR+PRG G+G +P +G L IGKGRI+ EG +VA+L +G+ + C+LAA L + +S TVADARF KPLD DLIRQ A HE++ITVEEGSVGGFGS V +L+ G+LD LK+RS+V+PD +++ P Sbjct: 413 LPVRFPIDRAGFVGADGPTHAGSFDTAFLTTLPGFVVMAAADEAELKHMVRTAVAYDAGPISFRYPRGEGVGVDMPV--RGEILRIGKGRIVKEGTKVALLSFGTRLADCLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQFARHHEMVITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKP 606
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS2_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs2 PE=3 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 4.631e-58 Identity = 116/199 (58.29%), Postives = 140/199 (70.35%), Query Frame = 2 Query: 32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628 +LPVRFA+DRAGLVGADG TH G+FDI +++ LP VVMA +DEAEL HMVATA DD P FRFPRG G G +P G LEIGKGRI+ EG RVAIL +G+ + + A L ++ I+ T+ADARF KPLD ++I L HE LITVEEG++GGFGSHV L+ G+ D K RSMVLPD +ID SPAD Sbjct: 416 RLPVRFAIDRAGLVGADGATHAGSFDIAYLANLPGFVVMAAADEAELKHMVATAVAHDDGPIAFRFPRGEGNGVDMP--EVGEVLEIGKGRIITEGTRVAILSFGTRLAEVQKAGEALAARGITPTIADARFAKPLDREMILDLVANHEALITVEEGAIGGFGSHVAQLLSDEGVFDTGFKYRSMVLPDIFIDQSSPAD 612
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS2_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Jannaschia sp. (strain CCS1) GN=dxs2 PE=3 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 1.760e-57 Identity = 114/198 (57.58%), Postives = 145/198 (73.23%), Query Frame = 2 Query: 35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628 LPVRF +DRAGLVGADGPTH GAFDI ++S LPNM VMA +DEAEL+HM+ATAA +D P R+PRG G G LP ++G LEIGKGR++ +G VAIL +G+ +++ AA L+++ +SVTVADARF KPLDT LI L +H LITVE+G+V GFG V H L +G LDG +R++ LPDR+ID SPA+ Sbjct: 412 LPVRFMIDRAGLVGADGPTHAGAFDIGYLSALPNMTVMACADEAELVHMMATAAAHNDGPIALRYPRGEGTGVALP--DQGDVLEIGKGRVIQDGHDVAILSFGAHLEEAKDAATALEARGLSVTVADARFAKPLDTTLIDDLMTKHSALITVEQGAVLGFGGLVLHHLAATGQLDGRCAVRTLHLPDRFIDQASPAE 607
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_NOVAD (1-deoxy-D-xylulose-5-phosphate synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=dxs PE=3 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 3.002e-57 Identity = 108/196 (55.10%), Postives = 146/196 (74.49%), Query Frame = 2 Query: 35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622 LPVRFA+DRAGLVGADG TH G+FD+T+++ LPN+VVMA +DEAEL+HM TAA+ D P FR+PRGNG+G LP + LEIGKGRI+ +G +VA+L G+ + + + AA+ L ++ +S TVAD RF KPLD LIRQL H++++TVEEGS+GG G+HV + G++DG LK+R+M LPD + DH +P Sbjct: 413 LPVRFAIDRAGLVGADGATHAGSFDVTYLATLPNLVVMAAADEAELVHMTYTAALHDSGPIAFRYPRGNGVGVPLPEVPER--LEIGKGRIIRQGSKVALLSLGTRLAEALKAADQLDARGLSTTVADLRFAKPLDVALIRQLMTTHDVIVTVEEGSIGGLGAHVLTMASDEGLVDGGLKIRTMRLPDLFQDHDAP 606
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS1_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs1 PE=3 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 3.002e-57 Identity = 108/197 (54.82%), Postives = 142/197 (72.08%), Query Frame = 2 Query: 32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622 KLPVRFA+DRAG VGADG TH G FD+ F+ CLPN+VVM +DEAEL MV TAA D P R+PRG G+G +P + + PL IGKGRI+ EG VA+L G+ +Q C+ A +L ++ ++ TVADARF KP D +L+ LA HE+LI VEEG++GGFG+HV +LT G+LDG LKLR++ +PDR+ +H +P Sbjct: 414 KLPVRFAIDRAGFVGADGATHGGVFDMAFLGCLPNLVVMCAADEAELARMVVTAAGHDSGPIALRYPRGEGVGVEIPEDPQ--PLAIGKGRIVREGKGVALLSIGTRLQSCLEACEILAARGLTPTVADARFLKPFDEELVADLAARHEVLIVVEEGAIGGFGAHVATWLTNQGLLDGGLKLRALHIPDRFFEHDAP 608
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_RHOCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodobacter capsulatus GN=dxs PE=3 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 8.092e-57 Identity = 109/198 (55.05%), Postives = 141/198 (71.21%), Query Frame = 2 Query: 35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628 LPVR +DRAGLVG DG TH GAFD++ ++ LPN VMA +DEAEL HMV TAA D P R+PRG G G +P +G LEIGKGR++ EG VAIL +G+ + Q + AA ML+++ +S TVADARFC+PLDTDLI +L H LIT+E+G++GGFG+ V H+L +G L+ +R+M LPD YIDHGSP + Sbjct: 414 LPVRLMIDRAGLVGQDGATHAGAFDVSMLANLPNFTVMAAADEAELCHMVVTAAAHDSGPIALRYPRGEGRGVEMP--ERGEVLEIGKGRVMTEGTEVAILSFGAHLAQALKAAEMLEAEGVSTTVADARFCRPLDTDLIDRLIEGHAALITLEQGAMGGFGAMVLHYLARTGQLEKGRAIRTMTLPDCYIDHGSPEE 609 HSP 2 Score: 22.7126 bits (47), Expect = 8.092e-57 Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3 Query: 3 DQVVHDVDLQN 35 DQ+VHDV LQN Sbjct: 403 DQLVHDVALQN 413
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_GLUOX (1-deoxy-D-xylulose-5-phosphate synthase OS=Gluconobacter oxydans GN=dxs PE=3 SV=2) HSP 1 Score: 220.32 bits (560), Expect = 8.734e-57 Identity = 116/202 (57.43%), Postives = 140/202 (69.31%), Query Frame = 2 Query: 35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDR-------VAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 619 LPVRFA+DRAGLVGADG TH GAFD+ ++ CLPNMVVMAPSDE EL+H ATA D P FR+PRGNGIG LP KG LEIGKGRI+ E R VAIL G + + + AA+ L +Q + VTVADARF KP+D L+ LA +HE+ IT+EEG++GGF S V L +G+LD +K R M LPDRYIDH + Sbjct: 430 LPVRFAIDRAGLVGADGATHAGAFDLNYLCCLPNMVVMAPSDEVELLHATATACEYDAGPIAFRYPRGNGIGLDLP--EKGEVLEIGKGRIVREARRAPNARGGVAILSLGPRMHESLRAADQLAAQGVPVTVADARFAKPIDKALVEDLARQHEVFITIEEGAIGGFSSLVVQHLAETGLLD-KVKFRPMALPDRYIDHNT 628 The following BLAST results are available for this feature:
BLAST of FC931381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931381 ID=FC931381; Name=FC931381; organism=Citrus clementina; type=EST; length=748bpback to top |