FC931381

Overview
NameFC931381
Unique NameFC931381
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_AZOC5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dxs PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 9.332e-59
Identity = 114/197 (57.87%), Postives = 137/197 (69.54%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPA 625
            LPVRFA+DRAGLVGADG TH GAFD+  ++CLP   VMAP+DEAEL HM+ATA   D  P  FRFPRG G+G   P   KG  L IGKGR++ EG  +A L  G+ +  C+  A  L S  IS TVADARF KP+D +LI  LA  H  L+ VEEGSVGGFGS V  FL+  G++DG LK+R++ LPD YIDH +PA
Sbjct:  412 LPVRFAIDRAGLVGADGATHAGAFDLAMLTCLPGFTVMAPADEAELTHMIATAVGHDAGPIAFRFPRGEGVGVERP--EKGERLPIGKGRVVREGQDIAFLSLGTRLAACLDVAERLSSLGISATVADARFAKPIDRELIAHLARTHAALVVVEEGSVGGFGSQVLQFLSDEGLMDGGLKVRALTLPDTYIDHDTPA 606          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_PELUB (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelagibacter ubique GN=dxs PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.592e-58
Identity = 111/196 (56.63%), Postives = 146/196 (74.49%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRF +DRAGLVGADG TH G+FDIT++S LPN +VMAPSDEAEL+ M  T+  I+++P   R+PRGNGIG  LP  ++   +EIGKGR++ EG +V IL  G+ +++C +AA  LK++ I  T+ DARF KPLD +LI + A EHE +ITVEEGS+GGFGSHV + L+  GI D  LK R+M+LPD +I+  SP
Sbjct:  411 LPVRFIIDRAGLVGADGSTHAGSFDITYLSTLPNFIVMAPSDEAELVKMTNTSMTINNKPCAIRYPRGNGIGVELPSIDEN--IEIGKGRVIQEGKQVCILSIGTRLEECKIAAAELKNKGIESTIVDARFAKPLDQELILKCAREHEAMITVEEGSIGGFGSHVENLLSEKGIFDKGLKFRTMILPDIFIEQDSP 604          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_AGRRK (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=dxs PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.592e-58
Identity = 112/196 (57.14%), Postives = 142/196 (72.45%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRF +DRAG VGADGPTH G+FD TF++ LP  VVMA +DEAEL HMV TAA  D  P  FR+PRG G+G  +P   +G  LEIGKGRI+ +G +VA+L +G+ +   + AA  L +  +  TVADARF KPLD DLIRQLA+ HE+LIT+EEGSVGGFGS V  FL   G+LD  LK+R++V+PD +++   P
Sbjct:  413 LPVRFPIDRAGFVGADGPTHAGSFDTTFLATLPGFVVMAAADEAELKHMVRTAAAYDLGPISFRYPRGEGVGIEMP--ERGQILEIGKGRIVKQGSKVALLSFGTRLADSLAAAEDLDAAGLPTTVADARFAKPLDHDLIRQLASHHEVLITIEEGSVGGFGSQVMQFLASEGLLDNGLKIRTLVMPDIWVEQAKP 606          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_RHILW (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dxs PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.715e-58
Identity = 112/196 (57.14%), Postives = 141/196 (71.94%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRF +DRAG VGADGPTH G+FD  F++ LP  VVMA +DEAEL HMV TA   D  P  FR+PRG G+G  +P   +G  L IGKGRI+ EG +VA+L +G+ +  C+LAA  L +  +S TVADARF KPLD DLIRQ A  HE++ITVEEGSVGGFGS V  +L+  G+LD  LK+RS+V+PD +++   P
Sbjct:  413 LPVRFPIDRAGFVGADGPTHAGSFDTAFLTTLPGFVVMAAADEAELKHMVRTAVAYDAGPISFRYPRGEGVGVDMPV--RGEILRIGKGRIVKEGTKVALLSFGTRLADCLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQFARHHEMVITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKP 606          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS2_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.631e-58
Identity = 116/199 (58.29%), Postives = 140/199 (70.35%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628
            +LPVRFA+DRAGLVGADG TH G+FDI +++ LP  VVMA +DEAEL HMVATA   DD P  FRFPRG G G  +P    G  LEIGKGRI+ EG RVAIL +G+ + +   A   L ++ I+ T+ADARF KPLD ++I  L   HE LITVEEG++GGFGSHV   L+  G+ D   K RSMVLPD +ID  SPAD
Sbjct:  416 RLPVRFAIDRAGLVGADGATHAGSFDIAYLANLPGFVVMAAADEAELKHMVATAVAHDDGPIAFRFPRGEGNGVDMP--EVGEVLEIGKGRIITEGTRVAILSFGTRLAEVQKAGEALAARGITPTIADARFAKPLDREMILDLVANHEALITVEEGAIGGFGSHVAQLLSDEGVFDTGFKYRSMVLPDIFIDQSSPAD 612          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS2_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Jannaschia sp. (strain CCS1) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.760e-57
Identity = 114/198 (57.58%), Postives = 145/198 (73.23%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628
            LPVRF +DRAGLVGADGPTH GAFDI ++S LPNM VMA +DEAEL+HM+ATAA  +D P   R+PRG G G  LP  ++G  LEIGKGR++ +G  VAIL +G+ +++   AA  L+++ +SVTVADARF KPLDT LI  L  +H  LITVE+G+V GFG  V H L  +G LDG   +R++ LPDR+ID  SPA+
Sbjct:  412 LPVRFMIDRAGLVGADGPTHAGAFDIGYLSALPNMTVMACADEAELVHMMATAAAHNDGPIALRYPRGEGTGVALP--DQGDVLEIGKGRVIQDGHDVAILSFGAHLEEAKDAATALEARGLSVTVADARFAKPLDTTLIDDLMTKHSALITVEQGAVLGFGGLVLHHLAATGQLDGRCAVRTLHLPDRFIDQASPAE 607          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_NOVAD (1-deoxy-D-xylulose-5-phosphate synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=dxs PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.002e-57
Identity = 108/196 (55.10%), Postives = 146/196 (74.49%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRFA+DRAGLVGADG TH G+FD+T+++ LPN+VVMA +DEAEL+HM  TAA+ D  P  FR+PRGNG+G  LP   +   LEIGKGRI+ +G +VA+L  G+ + + + AA+ L ++ +S TVAD RF KPLD  LIRQL   H++++TVEEGS+GG G+HV    +  G++DG LK+R+M LPD + DH +P
Sbjct:  413 LPVRFAIDRAGLVGADGATHAGSFDVTYLATLPNLVVMAAADEAELVHMTYTAALHDSGPIAFRYPRGNGVGVPLPEVPER--LEIGKGRIIRQGSKVALLSLGTRLAEALKAADQLDARGLSTTVADLRFAKPLDVALIRQLMTTHDVIVTVEEGSIGGLGAHVLTMASDEGLVDGGLKIRTMRLPDLFQDHDAP 606          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS1_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.002e-57
Identity = 108/197 (54.82%), Postives = 142/197 (72.08%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            KLPVRFA+DRAG VGADG TH G FD+ F+ CLPN+VVM  +DEAEL  MV TAA  D  P   R+PRG G+G  +P + +  PL IGKGRI+ EG  VA+L  G+ +Q C+ A  +L ++ ++ TVADARF KP D +L+  LA  HE+LI VEEG++GGFG+HV  +LT  G+LDG LKLR++ +PDR+ +H +P
Sbjct:  414 KLPVRFAIDRAGFVGADGATHGGVFDMAFLGCLPNLVVMCAADEAELARMVVTAAGHDSGPIALRYPRGEGVGVEIPEDPQ--PLAIGKGRIVREGKGVALLSIGTRLQSCLEACEILAARGLTPTVADARFLKPFDEELVADLAARHEVLIVVEEGAIGGFGAHVATWLTNQGLLDGGLKLRALHIPDRFFEHDAP 608          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_RHOCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodobacter capsulatus GN=dxs PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 8.092e-57
Identity = 109/198 (55.05%), Postives = 141/198 (71.21%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628
            LPVR  +DRAGLVG DG TH GAFD++ ++ LPN  VMA +DEAEL HMV TAA  D  P   R+PRG G G  +P   +G  LEIGKGR++ EG  VAIL +G+ + Q + AA ML+++ +S TVADARFC+PLDTDLI +L   H  LIT+E+G++GGFG+ V H+L  +G L+    +R+M LPD YIDHGSP +
Sbjct:  414 LPVRLMIDRAGLVGQDGATHAGAFDVSMLANLPNFTVMAAADEAELCHMVVTAAAHDSGPIALRYPRGEGRGVEMP--ERGEVLEIGKGRVMTEGTEVAILSFGAHLAQALKAAEMLEAEGVSTTVADARFCRPLDTDLIDRLIEGHAALITLEQGAMGGFGAMVLHYLARTGQLEKGRAIRTMTLPDCYIDHGSPEE 609          

HSP 2 Score: 22.7126 bits (47), Expect = 8.092e-57
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3
Query:    3 DQVVHDVDLQN 35
            DQ+VHDV LQN
Sbjct:  403 DQLVHDVALQN 413          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_GLUOX (1-deoxy-D-xylulose-5-phosphate synthase OS=Gluconobacter oxydans GN=dxs PE=3 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 8.734e-57
Identity = 116/202 (57.43%), Postives = 140/202 (69.31%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDR-------VAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 619
            LPVRFA+DRAGLVGADG TH GAFD+ ++ CLPNMVVMAPSDE EL+H  ATA   D  P  FR+PRGNGIG  LP   KG  LEIGKGRI+ E  R       VAIL  G  + + + AA+ L +Q + VTVADARF KP+D  L+  LA +HE+ IT+EEG++GGF S V   L  +G+LD  +K R M LPDRYIDH +
Sbjct:  430 LPVRFAIDRAGLVGADGATHAGAFDLNYLCCLPNMVVMAPSDEVELLHATATACEYDAGPIAFRYPRGNGIGLDLP--EKGEVLEIGKGRIVREARRAPNARGGVAILSLGPRMHESLRAADQLAAQGVPVTVADARFAKPIDKALVEDLARQHEVFITIEEGAIGGFSSLVVQHLAETGLLD-KVKFRPMALPDRYIDHNT 628          
The following BLAST results are available for this feature:
BLAST of FC931381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_AZOC59.332e-5957.871-deoxy-D-xylulose-5-phosphate synthase OS=Azorhiz... [more]
DXS_PELUB1.592e-5856.631-deoxy-D-xylulose-5-phosphate synthase OS=Pelagib... [more]
DXS_AGRRK1.592e-5857.141-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS_RHILW2.715e-5857.141-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS2_ROSDO4.631e-5858.291-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseo... [more]
DXS2_JANSC1.760e-5757.581-deoxy-D-xylulose-5-phosphate synthase 2 OS=Janna... [more]
DXS_NOVAD3.002e-5755.101-deoxy-D-xylulose-5-phosphate synthase OS=Novosph... [more]
DXS1_RHORT3.002e-5754.821-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS_RHOCA8.092e-5755.051-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoba... [more]
DXS_GLUOX8.734e-5757.431-deoxy-D-xylulose-5-phosphate synthase OS=Glucono... [more]

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Properties
Property NameValue
Genbank descriptionC34104E06EF PostHarvP1 Citrus clementina cDNA clone C34104E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931381 ID=FC931381; Name=FC931381; organism=Citrus clementina; type=EST; length=748bp
ATGATCAGGTTGTGCATGATGTAGACCTTCAAAATTACCAGTCCGCTTTG
CAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCTACTCATTGTGGA
GCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTGGTCATGGC
TCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGCAGCAGTTA
TAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGGAATTGGA
GCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATTGGGAAGGG
AAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTATGGTTCTG
TAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCAAGACATT
TCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATACAGACCT
CATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTGGAAGAGG
GTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAACCTTAAGT
GGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGGTGCTTCCTGATAG
ATACATTGACCATGGATCACCAGCCGATCAGCTTGAAGAATCAGGGCTCT
CCTCAGGCATATCTCTGCAACAGTCTTATCTCTCTTAGGGAGGCCAAAGA
AGCCCTTCTGATTTAAGTATCATACAAATCAAACACATCTTGCCCTTC
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