FC931381

Overview
NameFC931381
Unique NameFC931381
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_XANP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dxs PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.319e-56
Identity = 117/201 (58.21%), Postives = 144/201 (71.64%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILM---EGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILD-GPLKLRSMVLPDRYIDHGSPA 625
            LPVRF +DRAGLVGADG TH GAFDI F++CLP M VMAP+DEAEL+HM+AT    DD PS  RFPRG G+G   P   +G  L IGKGRI+    EGD +A+L  G+ +  C+ AA  L++   +VTVADARF KPLD +L+ +LA  H  L+TVEEGSVGGFGSHV   +T  G+LD G +K+R+MVLPD YID  + A
Sbjct:  412 LPVRFIIDRAGLVGADGATHAGAFDIAFLACLPGMTVMAPADEAELVHMMATMVAFDDGPSAVRFPRGEGVGVERP--ERGEVLPIGKGRIVHGTGEGD-IALLSLGTRLAACLDAAERLEAAGFTVTVADARFAKPLDRELVLKLAAGHGALVTVEEGSVGGFGSHVLQLVTDEGLLDRGAVKVRAMVLPDIYIDQETQA 609          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS2_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.661e-56
Identity = 107/197 (54.31%), Postives = 140/197 (71.07%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            KLPVRFA+DRAG VGADG TH G FD+ F+ CLPN+VVM  +DEAEL  MV TAA  D  P   R+PRG G+G  +P + +  PL IGKGRI+ EG  VA+L  G+ +Q C+ A  +L ++ ++ TVADARF KP D +L+  LA  HE+LI VEEG++GGF SHV  +L   G+LDG LKLR++ +PDR+ +H +P
Sbjct:  414 KLPVRFAIDRAGFVGADGATHGGVFDMAFLGCLPNLVVMCAADEAELARMVVTAAGHDSGPIALRYPRGEGVGVEIPEDPQ--PLAIGKGRIVREGKGVALLSIGTRLQSCLEACEILAARGLTPTVADARFLKPFDEELVADLAARHEVLIVVEEGAIGGFCSHVATWLANQGLLDGGLKLRALHIPDRFFEHDAP 608          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS1_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 7.394e-56
Identity = 111/199 (55.78%), Postives = 142/199 (71.36%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGD-RVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628
            LPVRFA+DRAGLVGADG TH G+FDI ++  LP MVVMA +DEAEL+HMVATA   +D P  FR+PRGNG G  LP    G  LEIGKGR++ EGD  VAIL  G+++  C  AA +L+++ I+ T+ADARF KPLD  LI  L   H+ LITVE+G++ GFG+ V   +   G+LD   K+R+M LPDR+ID  +PA+
Sbjct:  415 LPVRFAIDRAGLVGADGATHAGSFDIGYLGALPGMVVMAAADEAELVHMVATAGAHNDGPIAFRYPRGNGTGVPLP--ETGRVLEIGKGRMIREGDGEVAILSLGTLLSDCEAAARILEAEGINATIADARFAKPLDMALIANLVQTHKALITVEQGAMAGFGAMVLQSMAAEGLLDLGCKVRTMCLPDRFIDQAAPAE 611          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_ERYLH (1-deoxy-D-xylulose-5-phosphate synthase OS=Erythrobacter litoralis (strain HTCC2594) GN=dxs PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.068e-54
Identity = 104/196 (53.06%), Postives = 142/196 (72.45%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRFA+DRAGLVGADG TH G+FD+T+++ LPN VVMA +DEAEL+HM  TAA  D  P  FR+PRG GIG  LP   +   LEIGKGRI+  G +VA+L  G+ +++   AA+ L+++ +S T+AD RF KPLDT+LI QL   HE+++T+EE S+GG G+HV  + +  G+ D  LK+R+M LPD +I+  +P
Sbjct:  413 LPVRFAIDRAGLVGADGSTHAGSFDVTYLATLPNFVVMAAADEAELVHMTYTAAEHDSGPIAFRYPRGGGIGIDLPETPE--KLEIGKGRIVKHGSKVALLSLGTRLEEAKRAADELEAKGLSTTIADMRFAKPLDTELIAQLMKNHEVVVTIEEASIGGLGAHVLTYASDEGLTDAGLKIRTMRLPDAFIEQDAP 606          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_SPHWW (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dxs PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.394e-54
Identity = 107/196 (54.59%), Postives = 140/196 (71.43%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRFA+DRAGLVGADG TH G+FDIT+++ LPNMVVMA +DEAEL+HMV TAAV D  P   R+PRGNG+G  LP   +   L IGKGRI+ EG  VA+L  G+ + + + AA+ L +  +S TVAD RF KPLD  +I+ L   HE+ +T+EEG++GG G+HV    +  G++DG LKLR+M LPD + +H  P
Sbjct:  413 LPVRFAIDRAGLVGADGSTHAGSFDITYLATLPNMVVMAAADEAELVHMVHTAAVHDSGPIALRYPRGNGVGVALPAAPE--RLAIGKGRIVREGKTVALLSLGTRLGEALRAADQLDALGLSTTVADLRFAKPLDEAMIQTLLTSHEVAVTIEEGAIGGLGAHVLTLASDLGLIDGGLKLRTMRLPDAFQEHDKP 606          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_SPHAL (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingopyxis alaskensis GN=dxs PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.014e-53
Identity = 106/196 (54.08%), Postives = 139/196 (70.92%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPVRFA+DRAGLVGADG TH G+FDIT+++ LPNMVVMA +DEAEL+HM  TAA  D  P  FR+PRGNG G  LP   +   LEIGKGR++ EG  VAIL  G+ + + + AA+ L+++ +S +V D RF KPLD +LIR+    HE+ +TVEEGS+GG G+HV    +  G++D  LKLR++ LPD + D   P
Sbjct:  413 LPVRFAIDRAGLVGADGSTHAGSFDITYLATLPNMVVMAAADEAELVHMTYTAAEHDAGPIAFRYPRGNGTGVALPAVPQ--KLEIGKGRVVREGKTVAILSLGTRLAEALKAADTLEARGLSTSVIDLRFAKPLDEELIRRTLAAHEVCVTVEEGSIGGLGAHVLTLASDEGLIDAGLKLRTLRLPDMFQDQDKP 606          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS2_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymomonas mobilis GN=dxs2 PE=3 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.463e-49
Identity = 99/190 (52.11%), Postives = 133/190 (70.00%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRY 604
            LPVRFA+DRAGLVGADG TH G+FD+ FM  LPNMVVMAPSDE EL +MV + A  D  P   R+PRGNG+G  L    +  P  IGKGR++  G +VAIL  G+ +++ + AA+ L +Q +S +VAD RF KPLD  L RQL   H+++IT+EEG++GGF + V    +  G++D  LK+R++ LPDR+
Sbjct:  413 LPVRFAVDRAGLVGADGATHAGSFDLAFMVNLPNMVVMAPSDERELANMVHSMAHYDQGPISVRYPRGNGVGVSLEGEKEILP--IGKGRLIRRGKKVAILSLGTRLEESLKAADRLDAQGLSTSVADMRFAKPLDEALTRQLLKSHQVIITIEEGALGGFATQVLTMASDEGLMDDGLKIRTLRLPDRF 600          

HSP 2 Score: 21.9422 bits (45), Expect = 2.463e-49
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:    3 DQVVHDVDLQN 35
            DQ+VHDV +QN
Sbjct:  402 DQLVHDVAIQN 412          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS1_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymomonas mobilis GN=dxs1 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.463e-49
Identity = 99/190 (52.11%), Postives = 133/190 (70.00%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRY 604
            LPVRFA+DRAGLVGADG TH G+FD+ FM  LPNMVVMAPSDE EL +MV + A  D  P   R+PRGNG+G  L    +  P  IGKGR++  G +VAIL  G+ +++ + AA+ L +Q +S +VAD RF KPLD  L RQL   H+++IT+EEG++GGF + V    +  G++D  LK+R++ LPDR+
Sbjct:  413 LPVRFAVDRAGLVGADGATHAGSFDLAFMVNLPNMVVMAPSDERELANMVHSMAHYDQGPISVRYPRGNGVGVSLEGEKEILP--IGKGRLIRRGKKVAILSLGTRLEESLKAADRLDAQGLSTSVADMRFAKPLDEALTRQLLKSHQVIITIEEGALGGFATQVLTMASDEGLMDDGLKIRTLRLPDRF 600          

HSP 2 Score: 21.9422 bits (45), Expect = 2.463e-49
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:    3 DQVVHDVDLQN 35
            DQ+VHDV +QN
Sbjct:  402 DQLVHDVAIQN 412          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_CYAP8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=dxs PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.619e-45
Identity = 97/197 (49.24%), Postives = 123/197 (62.44%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPV F MDRAG+VGADGPTH G +DI ++ C+PNM +MAP DEAEL  M+ T     D P   R+PRGNGIG  L       PL IGKG IL  GD + ILGYG++V   + AA  L+   I  TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS V    +   +L   + L+   +PDR +DH +P
Sbjct:  412 LPVFFCMDRAGIVGADGPTHQGMYDIAYLRCIPNMTIMAPKDEAELQRMIVTGVNYTDGPIAMRYPRGNGIGVPLMEEG-WEPLPIGKGEILRNGDDLLILGYGTMVNTALQAAETLREHGIEATVVNARFVKPLDTELILPLAQRIGKVVTLEEGCLMGGFGSAVAEAFSDHNVL---VPLKRFGVPDRLVDHATP 604          

HSP 2 Score: 21.557 bits (44), Expect = 2.619e-45
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:    3 DQVVHDVDLQN 35
            DQV+HDV +QN
Sbjct:  401 DQVLHDVCIQN 411          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_ALHEH (1-deoxy-D-xylulose-5-phosphate synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.283e-44
Identity = 99/199 (49.75%), Postives = 135/199 (67.84%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628
            LPV FA+DRAGLVGADGPTH G+FD++++ C+PNM + APSDEAE   +++T     D P   R+PRG+G GA LP  +   PL IGKG     G R+A+L +G++V   +  A  L      +TVAD RF +PLD  LIR+LA+ H++L+TVEE +V GG GS V  +L  +G LD P  +R + LPDR++DHG+PA+
Sbjct:  412 LPVLFAVDRAGLVGADGPTHHGSFDLSYLRCVPNMTIAAPSDEAECWRLLST-GYHHDGPFAVRYPRGSGPGAALPEADL-DPLAIGKGVCRRRGRRIAVLAFGTLVVPALAVAEAL-----DLTVADMRFVRPLDEALIRELADTHDLLVTVEENAVAGGAGSGVSEYLARAG-LDVP--VRHLGLPDRFVDHGTPAE 600          

HSP 2 Score: 22.7126 bits (47), Expect = 1.283e-44
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3
Query:    3 DQVVHDVDLQN 35
            DQ+VHDV LQN
Sbjct:  401 DQLVHDVALQN 411          
The following BLAST results are available for this feature:
BLAST of FC931381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_XANP23.319e-5658.211-deoxy-D-xylulose-5-phosphate synthase OS=Xanthob... [more]
DXS2_RHORT5.661e-5654.311-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS1_ROSDO7.394e-5655.781-deoxy-D-xylulose-5-phosphate synthase 1 OS=Roseo... [more]
DXS_ERYLH1.068e-5453.061-deoxy-D-xylulose-5-phosphate synthase OS=Erythro... [more]
DXS_SPHWW1.394e-5454.591-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS_SPHAL2.014e-5354.081-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS2_ZYMMO2.463e-4952.111-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymom... [more]
DXS1_ZYMMO2.463e-4952.111-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymom... [more]
DXS_CYAP82.619e-4549.241-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_ALHEH1.283e-4449.751-deoxy-D-xylulose-5-phosphate synthase OS=Alkalil... [more]

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Properties
Property NameValue
Genbank descriptionC34104E06EF PostHarvP1 Citrus clementina cDNA clone C34104E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931381 ID=FC931381; Name=FC931381; organism=Citrus clementina; type=EST; length=748bp
ATGATCAGGTTGTGCATGATGTAGACCTTCAAAATTACCAGTCCGCTTTG
CAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCTACTCATTGTGGA
GCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTGGTCATGGC
TCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGCAGCAGTTA
TAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGGAATTGGA
GCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATTGGGAAGGG
AAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTATGGTTCTG
TAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCAAGACATT
TCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATACAGACCT
CATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTGGAAGAGG
GTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAACCTTAAGT
GGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGGTGCTTCCTGATAG
ATACATTGACCATGGATCACCAGCCGATCAGCTTGAAGAATCAGGGCTCT
CCTCAGGCATATCTCTGCAACAGTCTTATCTCTCTTAGGGAGGCCAAAGA
AGCCCTTCTGATTTAAGTATCATACAAATCAAACACATCTTGCCCTTC
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