FC931381

Overview
NameFC931381
Unique NameFC931381
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_VIBVY (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio vulnificus (strain YJ016) GN=dxs PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.231e-44
Identity = 100/196 (51.02%), Postives = 132/196 (67.35%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 619
            LPV FA+DRAGLVGADG TH GAFD+++M C+PNMV+MAPSDE E   M+ T       PS  R+PRGNG+G   P  ++ T LEIGKGR++ +G++VAIL +G+ +   + AA  L     + TVAD RF KPLD  LIRQLANEH++LIT+EE ++ GG G+ V  F+    I+   L L    LPD++I  G+
Sbjct:  412 LPVMFAIDRAGLVGADGQTHQGAFDLSYMRCIPNMVIMAPSDENECRQMLYTGHK-HQGPSAVRYPRGNGMGT--PIESEFTALEIGKGRLVRQGEKVAILSFGTFLANALEAAEAL-----NATVADMRFVKPLDEALIRQLANEHDVLITIEENAIAGGAGAGVIEFMMQEKIMKPVLNLG---LPDKFIHQGT 596          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_MAGSM (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetococcus sp. (strain MC-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.231e-44
Identity = 99/196 (50.51%), Postives = 133/196 (67.86%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 619
            LPV FA+DRAGLVGADG TH GA+D++++  +P M +MAP+DE EL HM+ TA  ++ +P   R+PRG  +G  LPP      LEIG+GR L +G+  AIL  G  V   + AA +L+ Q ISV+V DARF KPLD  L++++A  H +++ VEE +V GGFGS V   L+  G LD  LK+R M +PDRYI HG+
Sbjct:  408 LPVIFALDRAGLVGADGATHAGAYDLSYLRTVPGMTIMAPADENELRHMLHTAVALN-KPVALRYPRGTALG--LPPEPPHV-LEIGRGRTLRKGEHAAILAVGQPVHPALEAAAILEQQGISVSVYDARFVKPLDQRLLQEVAM-HGVVLVVEENAVQGGFGSAVLESLSNQGALDRGLKIRCMGIPDRYIPHGT 598          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_LARHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=dxs PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.701e-44
Identity = 100/198 (50.51%), Postives = 130/198 (65.66%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPA 625
            LPV FA+DRAGLVGADGPTH GAFD++++ C+PNMVVMAPSDE E   ++ T A + D P+  R+PRG G G    P    T L +G+G +  +G  +AIL +GS+V   + AA+ L       +VAD RF KPLDT LIRQLA  HE+L+TVEE  V GG GS V   L  +GI    + + ++ LPD Y++HG PA
Sbjct:  408 LPVVFAIDRAGLVGADGPTHAGAFDLSYLRCIPNMVVMAPSDENECRQLLYT-AFLHDGPTAVRYPRGTGPGC--EPVAAMTALPLGQGTLRRQGKGIAILAFGSMVHPALAAADQL-----DASVADMRFVKPLDTALIRQLAASHELLVTVEENVVMGGTGSAVLETLAAAGI---TVPVLNLGLPDHYVEHGDPA 594          

HSP 2 Score: 22.3274 bits (46), Expect = 3.701e-44
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:    3 DQVVHDVDLQN 35
            DQ++HDV LQN
Sbjct:  397 DQLIHDVALQN 407          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_VIBVU (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio vulnificus GN=dxs PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.806e-44
Identity = 99/196 (50.51%), Postives = 132/196 (67.35%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGS 619
            LPV FA+DRAGLVGADG TH GAFD+++M C+PNMV+MAPSDE E   M+ T       PS  R+PRGNG+G   P  ++ T LEIGKGR++ +G++VAIL +G+ +   + AA  L     + TVAD RF KPLD  L+RQLANEH++LIT+EE ++ GG G+ V  F+    I+   L L    LPD++I  G+
Sbjct:  412 LPVMFAIDRAGLVGADGQTHQGAFDLSYMRCIPNMVIMAPSDENECRQMLYTGHK-HQGPSAVRYPRGNGMGT--PIESEFTALEIGKGRLVRQGEKVAILSFGTFLANALEAAEAL-----NATVADMRFVKPLDEALLRQLANEHDVLITIEENAIAGGAGAGVIEFMMQEKIMKPVLNLG---LPDKFIHQGT 596          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_THEEB (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=dxs PE=3 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 4.971e-44
Identity = 97/198 (48.99%), Postives = 125/198 (63.13%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            KLPV F MDRAG+VGADGPTH G +DI ++ CLPNMV+MAP DEAEL  M+ T     D P   R+PRGNG G  L       PLEIGKG +L  G+ + ++ YGS+V   +  A +LK   +S  V +ARF KPLDT+LI  LA +   ++T+EEG  +GGFGS V   L  + IL   L+L    +PD  ++H SP
Sbjct:  411 KLPVFFCMDRAGIVGADGPTHQGMYDIAYLRCLPNMVLMAPKDEAELQRMIVTGINYTDGPIALRYPRGNGYGVALMEEG-WEPLEIGKGELLRSGEDLLLVAYGSMVYPAMQVAEILKEHGMSAAVINARFAKPLDTELILPLAKQIGRVVTLEEGCLMGGFGSAVLEALQEADILVPVLRLG---VPDILVEHASP 604          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_SYNJB (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. GN=dxs PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.107e-43
Identity = 95/200 (47.50%), Postives = 125/200 (62.50%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628
            KLPV F +DRAG+VGADGPTH G +DI ++ C+P MV+MAP DEAEL  MV T       P   R+PRG+G+G  L       PL IGK  +L  G  V IL YGS+V   + AA +LK   IS TV +ARF KPLDT+LI  LA +  +++TVEEG  +GGFGS V   L  +   D  + L  + +PD +++H +P +
Sbjct:  416 KLPVFFCLDRAGVVGADGPTHQGMYDIAYLRCIPEMVLMAPKDEAELQRMVVTGIQYTQGPIAMRYPRGSGVGVPLAEEG-WEPLPIGKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISATVVNARFAKPLDTELILPLAEQSRLVVTVEEGCLMGGFGSAVAEALLDA---DLAVPLLRLGVPDVWVEHATPEE 611          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_CYAP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7424) GN=dxs PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.390e-43
Identity = 93/197 (47.21%), Postives = 122/197 (61.93%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPV F MDRAG+VGADGPTH G +DI ++ C+PN+V+MAP DEAEL  M+ T     D P   R+PRGNG+G  L        L IGKG IL  GD + +LGYG++V   +  A +L    I  TV +ARF KPLDTDLI  LA +   ++T+EEG  +GGFGS V   L    +L   + ++   +PD+ +DH  P
Sbjct:  411 LPVFFCMDRAGIVGADGPTHQGMYDIAYLRCIPNLVIMAPKDEAELQRMIVTGVNYTDGPIAMRYPRGNGLGVPLMEEG-WEALPIGKGEILRNGDDLLLLGYGTMVNTAMQVAEILGEHGIEATVVNARFVKPLDTDLIVPLAKQTGKVVTLEEGCLMGGFGSAVAEALLDHNVL---VPVKRFGVPDQLVDHAKP 603          

HSP 2 Score: 22.3274 bits (46), Expect = 1.390e-43
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:    3 DQVVHDVDLQN 35
            DQV+HDV +QN
Sbjct:  400 DQVIHDVCIQN 410          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_SHEWM (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=dxs PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.467e-43
Identity = 96/200 (48.00%), Postives = 130/200 (65.00%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 628
            KLPV FA+DR G+VGADGPTH GAFD++FM  +PNMV+MAPSDE E   M+ T    +D P+  R+PRG+  GA  P   + T L IGKG I  +G +VAIL +G+     +LA+ +   + +  TVAD RF KPLD +LI++LAN H++L+TVEE ++ GG GS V   L L   L  P+ +  + LPD +I HG   +
Sbjct:  411 KLPVLFAIDRGGIVGADGPTHQGAFDLSFMRTVPNMVIMAPSDENECRQMLYTGYCYNDGPTAVRYPRGSATGA--PQIEEMTALPIGKGLIKRQGQKVAILNFGT-----LLASVLTAGESLDATVADMRFVKPLDVELIKELANSHDVLVTVEENAIMGGAGSGV---LELLQQLKQPMPVLQLGLPDEFIKHGDSGE 600          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_SYNY3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=dxs PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.208e-43
Identity = 95/198 (47.98%), Postives = 123/198 (62.12%), Query Frame = 2
Query:   32 KLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            KLPV F +DRAG+VGADGPTH G +DI ++ C+PN+V+MAP DEAEL  M+ T           R+PRGNGIG  L       PLEIGK  IL  GD V +LGYGS+V   +  A +L    I  TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS V   L  + +L   + L+ + +PD  +DH +P
Sbjct:  411 KLPVFFCLDRAGIVGADGPTHQGMYDIAYLRCIPNLVLMAPKDEAELQQMLVTGVNYTGGAIAMRYPRGNGIGVPLMEEG-WEPLEIGKAEILRSGDDVLLLGYGSMVYPALQTAELLHEHGIEATVVNARFVKPLDTELILPLAERIGKVVTMEEGCLMGGFGSAVAEALMDNNVL---VPLKRLGVPDILVDHATP 604          
BLAST of FC931381 vs. ExPASy Swiss-Prot
Match: DXS_CYAA5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=dxs PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.807e-43
Identity = 91/197 (46.19%), Postives = 123/197 (62.44%), Query Frame = 2
Query:   35 LPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSP 622
            LPV F +DRAG+VGADGPTH G +DI ++ C+PN+ +MAP DEAEL  MV T     D P   R+PRG+G+G  L       P+ IGKG IL  GD V ++GYG++V Q +  A +LK   I  TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS V   L    ++   + ++   +PD+ +DH  P
Sbjct:  412 LPVFFCLDRAGIVGADGPTHQGLYDIAYLRCIPNLTIMAPKDEAELQRMVVTGINHTDGPIAMRYPRGSGVGVPLMEEG-WEPVSIGKGEILRNGDDVLLVGYGTMVHQSLQVAEILKEHGIEATVVNARFVKPLDTELIVPLAQRIGKVVTLEEGCLMGGFGSAVAEALLDHDVV---VPIKRFGVPDKLVDHAKP 604          

HSP 2 Score: 21.557 bits (44), Expect = 6.807e-43
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:    3 DQVVHDVDLQN 35
            DQV+HDV +QN
Sbjct:  401 DQVLHDVCIQN 411          
The following BLAST results are available for this feature:
BLAST of FC931381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_VIBVY2.231e-4451.021-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_MAGSM2.231e-4450.511-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_LARHH3.701e-4450.511-deoxy-D-xylulose-5-phosphate synthase OS=Laribac... [more]
DXS_VIBVU3.806e-4450.511-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_THEEB4.971e-4448.991-deoxy-D-xylulose-5-phosphate synthase OS=Thermos... [more]
DXS_SYNJB1.107e-4347.501-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_CYAP71.390e-4347.211-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_SHEWM2.467e-4348.001-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SYNY34.208e-4347.981-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_CYAA56.807e-4346.191-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]

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Properties
Property NameValue
Genbank descriptionC34104E06EF PostHarvP1 Citrus clementina cDNA clone C34104E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931381 ID=FC931381; Name=FC931381; organism=Citrus clementina; type=EST; length=748bp
ATGATCAGGTTGTGCATGATGTAGACCTTCAAAATTACCAGTCCGCTTTG
CAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCTACTCATTGTGGA
GCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTGGTCATGGC
TCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGCAGCAGTTA
TAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGGAATTGGA
GCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATTGGGAAGGG
AAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTATGGTTCTG
TAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCAAGACATT
TCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATACAGACCT
CATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTGGAAGAGG
GTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAACCTTAAGT
GGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGGTGCTTCCTGATAG
ATACATTGACCATGGATCACCAGCCGATCAGCTTGAAGAATCAGGGCTCT
CCTCAGGCATATCTCTGCAACAGTCTTATCTCTCTTAGGGAGGCCAAAGA
AGCCCTTCTGATTTAAGTATCATACAAATCAAACACATCTTGCCCTTC
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