FC931384

Overview
NameFC931384
Unique NameFC931384
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15321 contig Ccv1_Contig15321:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL10A_CANGA (60S ribosomal protein L10a OS=Candida glabrata GN=RPL10A PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.638e-57
Identity = 107/205 (52.20%), Postives = 144/205 (70.24%), Query Frame = 1
Query:   64 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKTGRMSGASI 678
            MSK+ +  +RE +  +++YS ET KRNF ET+ELQ+GLKNYDPQ+DKRFSG++KLP  PRP M +C+ GDA  V+ A+  G+D M V+                  Y+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H + L  KV + ++T+KFQLKKVLC+ VAVGN+ M+E  +   + MSVNFLVSLLKK  +  G+ +
Sbjct:    1 MSKITTSHVRENVKELLKYSAETKKRNFLETVELQVGLKNYDPQRDKRFSGTLKLPVCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLV 205          
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL10A_CANAL (60S ribosomal protein L10a OS=Candida albicans GN=RPL10A PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.132e-56
Identity = 107/205 (52.20%), Postives = 143/205 (69.76%), Query Frame = 1
Query:   64 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKTGRMSGASI 678
            MSK+ S  +RE +  +++YS ET KRNF ET+ELQ+GLKNYDPQ+DKRFSG++KLP +PRP M  C+ GDA   + A+ +G+D M V+                  Y+AF+ASE +IKQIPRLLG  L+KAG+FPT V+H + L SKV + K+T+KFQLKKVLC+ VAVGN+ MEE  +   + M+ NFLVSLLKK  +  G+ +
Sbjct:    1 MSKITSSGVREYVHKLLEYSTETKKRNFLETVELQVGLKNYDPQRDKRFSGTLKLPQVPRPNMTTCIFGDAFDFDRAKSLGVDAMSVDDLKKLNKNKKLIKKLAKKYNAFIASEVLIKQIPRLLGRTLSKAGQFPTPVSHNDDLYSKVTDVKSTIKFQLKKVLCLAVAVGNVDMEEDVLVNQIMMAANFLVSLLKKNWQNVGSLV 205          
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1A_SCHPO (60S ribosomal protein L1-A OS=Schizosaccharomyces pombe GN=rpl1a PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.931e-56
Identity = 108/205 (52.68%), Postives = 150/205 (73.17%), Query Frame = 1
Query:   64 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKTGRMSGASI 678
            MSK+    +R ++ +I++ S+E  KRNFTET+ELQIGLKNYDPQ+DKRFSG++KLP++PRP M +C+LGDA  ++ A+  G+D M V+                  Y AF+ASE +IKQIPRLLGPGL+KAGKFP+ V+H + L  K+ E K+T+KFQLKKVLC+GVAVG++ M E+Q+  N+ +++NFLVSLLKK  +  G+ +
Sbjct:    1 MSKVSPANIRSSVETILKGSEE-KKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLV 204          
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL10A_TRYBR (60S ribosomal protein L10a OS=Trypanosoma brucei rhodesiense GN=RPL10A PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.114e-51
Identity = 101/196 (51.53%), Postives = 132/196 (67.35%), Query Frame = 1
Query:   64 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 651
            MSK+    L EAI ++++  KE   R F E+I+LQ+ LKNYDPQKDKRFSGSV+LPH+ RP+M VC+L D  H + A+K  +  M+ E                  Y AFL SES+IK +PRL+GP +++ GKFPT+    ESL  KV E ++TVKFQLKKVLC+G  VG++ M E Q+ QNV M++NFLVSLLKK
Sbjct:    1 MSKIPPALLSEAIQNVLKDRKE---RKFKESIDLQVNLKNYDPQKDKRFSGSVRLPHVCRPRMTVCLLCDLVHEDIAKKNDVPTMNQEELKKLNKNKKLVKKMCNQYDAFLCSESIIKTVPRLVGPHMHRVGKFPTVCAQNESLPDKVLELQSTVKFQLKKVLCLGTCVGHVDMTEDQVRQNVVMAINFLVSLLKK 193          

HSP 2 Score: 31.9574 bits (71), Expect = 2.114e-51
Identity = 11/21 (52.38%), Postives = 18/21 (85.71%), Query Frame = 3
Query:  639 IVEENWQNVRCLYLKSTMGPS 701
            ++++NWQN++  Y+KSTMG S
Sbjct:  190 LLKKNWQNLKSAYIKSTMGKS 210          
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL10A_PIG (60S ribosomal protein L10a (Fragment) OS=Sus scrofa GN=RPL10A PE=2 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 3.778e-44
Identity = 87/164 (53.05%), Postives = 113/164 (68.90%), Query Frame = 1
Query:   67 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCM 558
            SK+  D L EA+  ++ +  + N   F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC LGD QH +EA+ + + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH   + +KV+E K+ VKFQ+K+VLC+
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRNXXKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCXLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNXDMVAKVDEVKSRVKFQMKEVLCL 165          
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL10A_ENTHI (60S ribosomal protein L10a (Fragment) OS=Entamoeba histolytica GN=RPL10A PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.000e-33
Identity = 74/163 (45.40%), Postives = 101/163 (61.96%), Query Frame = 1
Query:   91 REAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNL 579
            R+ +++I+   KE  +R F ET EL + LKNYDP KDKR  G+ KLP++ +   KVC+LGDAQ  E A+K  + +MDV+                  Y+ FL S+SV +Q+ ++LGPGLNK GKFP  +   E L+ K+NE +  V  QLKKVLCMGV  GN+
Sbjct:    6 RQGVATIL---KEKKERKFGETGELHLALKNYDPDKDKRCGGTDKLPNVTKANYKVCVLGDAQACEAAQKENIPHMDVDALKALYKDKMFFKKLARKYNTFLGSDSVGRQLQKILGPGLNKGGKFPPPLGKNEDLKVKINELQCQVNSQLKKVLCMGVGGGNV 165          
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL10A_CAERE (60S ribosomal protein L10a (Fragment) OS=Caenorhabditis remanei GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.474e-28
Identity = 61/112 (54.46%), Postives = 77/112 (68.75%), Query Frame = 1
Query:  211 SGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKK 546
            SGS++L HIPRP MKVC+ GD  H++EA    +  M  +                  Y AF+ASES+IKQIPR+LGPGLNKAGKFP++VTH ESL+SK +E +ATVKFQ+KK
Sbjct:    1 SGSIRLKHIPRPSMKVCVFGDQHHLDEAAAGNIPAMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKK 112          
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_PYRKO (50S ribosomal protein L1P OS=Pyrococcus kodakaraensis GN=rpl1p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.515e-16
Identity = 50/189 (26.46%), Postives = 94/189 (49.74%), Query Frame = 1
Query:   91 REAISSIVQYSKETNKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLV-THQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 651
            ++ + ++ +       RNFT+T+E+ + LK+ D +K + RF   V LPH    + K+ ++ D    E A+K+GLD +  E                  Y  F+A+  ++ +I R LG  L    K P +V     +LE  V + K TV+ QLK    +   +G   M+++++ +N +  +N +++ L++
Sbjct:    6 QKLVEAVKEAKARAKPRNFTQTVEMAVNLKDVDLRKPENRFKLEVVLPHGRGKEPKIAVIADGAVAEAAKKLGLDVISGEELEELAKSPRQARKLAKKYDFFIAAAPLMPKIGRYLGRYLGPRNKMPVVVPPTMTNLEPIVEKLKKTVRIQLKNNPVVHAPIGTEDMDDEKLAENAEAVLNAIINKLER 194          

HSP 2 Score: 23.0978 bits (48), Expect = 7.515e-16
Identity = 8/20 (40.00%), Postives = 14/20 (70.00%), Query Frame = 3
Query:  642 VEENWQNVRCLYLKSTMGPS 701
            +E     V+ +Y+K+TMGP+
Sbjct:  192 LERGENQVKSVYIKTTMGPA 211          
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_PYRAB (50S ribosomal protein L1P OS=Pyrococcus abyssi GN=rpl1p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.946e-15
Identity = 56/199 (28.14%), Postives = 97/199 (48.74%), Query Frame = 1
Query:   64 MSKLQSDALREAISSIVQYSKETNK-RNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLV-THQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 651
            MS++  D  R+ I   V+ +K   K RNFT+++E+ + LK+ D ++ + RF   V LPH     +K+ ++ D    E A ++GLD +                     Y  F+A   ++ +I R LG  L    K P +V     +LE  V + K TV+ QLK    +   VG   M +++I +N++  +N ++  L++
Sbjct:    1 MSRMPFD--RQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNAIIGKLER 197          

HSP 2 Score: 22.3274 bits (46), Expect = 7.946e-15
Identity = 7/20 (35.00%), Postives = 14/20 (70.00%), Query Frame = 3
Query:  642 VEENWQNVRCLYLKSTMGPS 701
            +E     ++ +Y+K+TMGP+
Sbjct:  195 LERGESQIKSVYVKTTMGPA 214          
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_PYRHO (50S ribosomal protein L1P OS=Pyrococcus horikoshii GN=rpl1p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.033e-14
Identity = 55/199 (27.64%), Postives = 97/199 (48.74%), Query Frame = 1
Query:   64 MSKLQSDALREAISSIVQYSKETNK-RNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLV-THQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 651
            MS++  D  R+ I   V+ +K   K RNFT+++E+ + LK+ D ++ + RF   V LPH     +K+ ++ D    E A ++GLD +                     Y  F+A   ++ +I R LG  L    K P +V     ++E  V + K TV+ QLK    +   VG   M ++Q+ +N++  +N ++  L++
Sbjct:    1 MSRMAFD--RQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVISSAELEEIAKSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTMTNIEPIVEKLKKTVRIQLKDNPVVHAPVGTEKMSDEQLAENIEAVLNAIIGKLER 197          

HSP 2 Score: 23.483 bits (49), Expect = 1.033e-14
Identity = 8/20 (40.00%), Postives = 14/20 (70.00%), Query Frame = 3
Query:  642 VEENWQNVRCLYLKSTMGPS 701
            +E     +R +Y+K+TMGP+
Sbjct:  195 LERGENQIRSVYVKTTMGPA 214          
The following BLAST results are available for this feature:
BLAST of FC931384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL10A_CANGA6.638e-5752.2060S ribosomal protein L10a OS=Candida glabrata GN=... [more]
RL10A_CANAL1.132e-5652.2060S ribosomal protein L10a OS=Candida albicans GN=... [more]
RL1A_SCHPO1.931e-5652.6860S ribosomal protein L1-A OS=Schizosaccharomyces ... [more]
RL10A_TRYBR2.114e-5151.5360S ribosomal protein L10a OS=Trypanosoma brucei r... [more]
RL10A_PIG3.778e-4453.0560S ribosomal protein L10a (Fragment) OS=Sus scrof... [more]
RL10A_ENTHI3.000e-3345.4060S ribosomal protein L10a (Fragment) OS=Entamoeba... [more]
RL10A_CAERE6.474e-2854.4660S ribosomal protein L10a (Fragment) OS=Caenorhab... [more]
RL1_PYRKO7.515e-1626.4650S ribosomal protein L1P OS=Pyrococcus kodakaraen... [more]
RL1_PYRAB7.946e-1528.1450S ribosomal protein L1P OS=Pyrococcus abyssi GN=... [more]
RL1_PYRHO1.033e-1427.6450S ribosomal protein L1P OS=Pyrococcus horikoshii... [more]

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Properties
Property NameValue
Genbank descriptionC34104E09EF PostHarvP1 Citrus clementina cDNA clone C34104E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931384 ID=FC931384; Name=FC931384; organism=Citrus clementina; type=EST; length=744bp
GTAGGGTTTCTTTTTCGTCTTCGAAGAAAAAAAAATCTGTAAAGGACTCC
AAGCGCTTCAATCATGAGCAAGCTTCAGAGTGATGCACTGAGAGAGGCCA
TCTCTAGTATTGTGCAATACTCTAAGGAGACAAATAAGAGGAACTTCACC
GAGACTATTGAGCTTCAGATTGGTCTCAAGAACTATGATCCACAAAAGGA
CAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATTCCCCGCCCCAAGA
TGAAGGTCTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCCGAGAAG
ATTGGTTTGGACTACATGGATGTTGAAGGATTGAAAAAATTGAACAAGAA
CAAGAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGCAT
CAGAGTCTGTCATCAAGCAGATTCCTCGTTTGTTGGGTCCTGGTCTCAAC
AAGGCAGGAAAGTTCCCTACCCTTGTTACTCACCAAGAATCCCTGGAGTC
CAAAGTCAACGAGACTAAGGCAACAGTGAAGTTCCAATTGAAGAAGGTGC
TTTGCATGGGAGTTGCTGTCGGAAACCTTTCAATGGAGGAGAAGCAGATC
TTCCAGAATGTTCAAATGAGTGTTAACTTCCTTGTCTCATTGTTGAAGAA
AACTGGCAGAATGTCAGGTGCCTCTATCTGAAGAGTACCATGGGTCCTTC
AACCGCATCTTTTAGAAATCTGCTTTATGTGAGTTTGTAGGGAA
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