FC931384
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL10A_CANGA (60S ribosomal protein L10a OS=Candida glabrata GN=RPL10A PE=3 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 6.638e-57 Identity = 107/205 (52.20%), Postives = 144/205 (70.24%), Query Frame = 1 Query: 64 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKTGRMSGASI 678 MSK+ + +RE + +++YS ET KRNF ET+ELQ+GLKNYDPQ+DKRFSG++KLP PRP M +C+ GDA V+ A+ G+D M V+ Y+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H + L KV + ++T+KFQLKKVLC+ VAVGN+ M+E + + MSVNFLVSLLKK + G+ + Sbjct: 1 MSKITTSHVRENVKELLKYSAETKKRNFLETVELQVGLKNYDPQRDKRFSGTLKLPVCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLV 205
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL10A_CANAL (60S ribosomal protein L10a OS=Candida albicans GN=RPL10A PE=3 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 1.132e-56 Identity = 107/205 (52.20%), Postives = 143/205 (69.76%), Query Frame = 1 Query: 64 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKTGRMSGASI 678 MSK+ S +RE + +++YS ET KRNF ET+ELQ+GLKNYDPQ+DKRFSG++KLP +PRP M C+ GDA + A+ +G+D M V+ Y+AF+ASE +IKQIPRLLG L+KAG+FPT V+H + L SKV + K+T+KFQLKKVLC+ VAVGN+ MEE + + M+ NFLVSLLKK + G+ + Sbjct: 1 MSKITSSGVREYVHKLLEYSTETKKRNFLETVELQVGLKNYDPQRDKRFSGTLKLPQVPRPNMTTCIFGDAFDFDRAKSLGVDAMSVDDLKKLNKNKKLIKKLAKKYNAFIASEVLIKQIPRLLGRTLSKAGQFPTPVSHNDDLYSKVTDVKSTIKFQLKKVLCLAVAVGNVDMEEDVLVNQIMMAANFLVSLLKKNWQNVGSLV 205
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1A_SCHPO (60S ribosomal protein L1-A OS=Schizosaccharomyces pombe GN=rpl1a PE=1 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 1.931e-56 Identity = 108/205 (52.68%), Postives = 150/205 (73.17%), Query Frame = 1 Query: 64 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKTGRMSGASI 678 MSK+ +R ++ +I++ S+E KRNFTET+ELQIGLKNYDPQ+DKRFSG++KLP++PRP M +C+LGDA ++ A+ G+D M V+ Y AF+ASE +IKQIPRLLGPGL+KAGKFP+ V+H + L K+ E K+T+KFQLKKVLC+GVAVG++ M E+Q+ N+ +++NFLVSLLKK + G+ + Sbjct: 1 MSKVSPANIRSSVETILKGSEE-KKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLV 204
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL10A_TRYBR (60S ribosomal protein L10a OS=Trypanosoma brucei rhodesiense GN=RPL10A PE=2 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 2.114e-51 Identity = 101/196 (51.53%), Postives = 132/196 (67.35%), Query Frame = 1 Query: 64 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 651 MSK+ L EAI ++++ KE R F E+I+LQ+ LKNYDPQKDKRFSGSV+LPH+ RP+M VC+L D H + A+K + M+ E Y AFL SES+IK +PRL+GP +++ GKFPT+ ESL KV E ++TVKFQLKKVLC+G VG++ M E Q+ QNV M++NFLVSLLKK Sbjct: 1 MSKIPPALLSEAIQNVLKDRKE---RKFKESIDLQVNLKNYDPQKDKRFSGSVRLPHVCRPRMTVCLLCDLVHEDIAKKNDVPTMNQEELKKLNKNKKLVKKMCNQYDAFLCSESIIKTVPRLVGPHMHRVGKFPTVCAQNESLPDKVLELQSTVKFQLKKVLCLGTCVGHVDMTEDQVRQNVVMAINFLVSLLKK 193 HSP 2 Score: 31.9574 bits (71), Expect = 2.114e-51 Identity = 11/21 (52.38%), Postives = 18/21 (85.71%), Query Frame = 3 Query: 639 IVEENWQNVRCLYLKSTMGPS 701 ++++NWQN++ Y+KSTMG S Sbjct: 190 LLKKNWQNLKSAYIKSTMGKS 210
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL10A_PIG (60S ribosomal protein L10a (Fragment) OS=Sus scrofa GN=RPL10A PE=2 SV=3) HSP 1 Score: 178.333 bits (451), Expect = 3.778e-44 Identity = 87/164 (53.05%), Postives = 113/164 (68.90%), Query Frame = 1 Query: 67 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCM 558 SK+ D L EA+ ++ + + N F ET+ELQI LKNYDPQKDKRFSG+V+L PRPK VC LGD QH +EA+ + + +MD+E Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH + +KV+E K+ VKFQ+K+VLC+ Sbjct: 3 SKVSRDTLYEAVREVL-HGNQRNXXKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCXLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNXDMVAKVDEVKSRVKFQMKEVLCL 165
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL10A_ENTHI (60S ribosomal protein L10a (Fragment) OS=Entamoeba histolytica GN=RPL10A PE=2 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 3.000e-33 Identity = 74/163 (45.40%), Postives = 101/163 (61.96%), Query Frame = 1 Query: 91 REAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNL 579 R+ +++I+ KE +R F ET EL + LKNYDP KDKR G+ KLP++ + KVC+LGDAQ E A+K + +MDV+ Y+ FL S+SV +Q+ ++LGPGLNK GKFP + E L+ K+NE + V QLKKVLCMGV GN+ Sbjct: 6 RQGVATIL---KEKKERKFGETGELHLALKNYDPDKDKRCGGTDKLPNVTKANYKVCVLGDAQACEAAQKENIPHMDVDALKALYKDKMFFKKLARKYNTFLGSDSVGRQLQKILGPGLNKGGKFPPPLGKNEDLKVKINELQCQVNSQLKKVLCMGVGGGNV 165
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL10A_CAERE (60S ribosomal protein L10a (Fragment) OS=Caenorhabditis remanei GN=rpl-10a PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.474e-28 Identity = 61/112 (54.46%), Postives = 77/112 (68.75%), Query Frame = 1 Query: 211 SGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKK 546 SGS++L HIPRP MKVC+ GD H++EA + M + Y AF+ASES+IKQIPR+LGPGLNKAGKFP++VTH ESL+SK +E +ATVKFQ+KK Sbjct: 1 SGSIRLKHIPRPSMKVCVFGDQHHLDEAAAGNIPAMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKK 112
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_PYRKO (50S ribosomal protein L1P OS=Pyrococcus kodakaraensis GN=rpl1p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 7.515e-16 Identity = 50/189 (26.46%), Postives = 94/189 (49.74%), Query Frame = 1 Query: 91 REAISSIVQYSKETNKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLV-THQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 651 ++ + ++ + RNFT+T+E+ + LK+ D +K + RF V LPH + K+ ++ D E A+K+GLD + E Y F+A+ ++ +I R LG L K P +V +LE V + K TV+ QLK + +G M+++++ +N + +N +++ L++ Sbjct: 6 QKLVEAVKEAKARAKPRNFTQTVEMAVNLKDVDLRKPENRFKLEVVLPHGRGKEPKIAVIADGAVAEAAKKLGLDVISGEELEELAKSPRQARKLAKKYDFFIAAAPLMPKIGRYLGRYLGPRNKMPVVVPPTMTNLEPIVEKLKKTVRIQLKNNPVVHAPIGTEDMDDEKLAENAEAVLNAIINKLER 194 HSP 2 Score: 23.0978 bits (48), Expect = 7.515e-16 Identity = 8/20 (40.00%), Postives = 14/20 (70.00%), Query Frame = 3 Query: 642 VEENWQNVRCLYLKSTMGPS 701 +E V+ +Y+K+TMGP+ Sbjct: 192 LERGENQVKSVYIKTTMGPA 211
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_PYRAB (50S ribosomal protein L1P OS=Pyrococcus abyssi GN=rpl1p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 7.946e-15 Identity = 56/199 (28.14%), Postives = 97/199 (48.74%), Query Frame = 1 Query: 64 MSKLQSDALREAISSIVQYSKETNK-RNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLV-THQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 651 MS++ D R+ I V+ +K K RNFT+++E+ + LK+ D ++ + RF V LPH +K+ ++ D E A ++GLD + Y F+A ++ +I R LG L K P +V +LE V + K TV+ QLK + VG M +++I +N++ +N ++ L++ Sbjct: 1 MSRMPFD--RQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNAIIGKLER 197 HSP 2 Score: 22.3274 bits (46), Expect = 7.946e-15 Identity = 7/20 (35.00%), Postives = 14/20 (70.00%), Query Frame = 3 Query: 642 VEENWQNVRCLYLKSTMGPS 701 +E ++ +Y+K+TMGP+ Sbjct: 195 LERGESQIKSVYVKTTMGPA 214
BLAST of FC931384 vs. ExPASy Swiss-Prot
Match: RL1_PYRHO (50S ribosomal protein L1P OS=Pyrococcus horikoshii GN=rpl1p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.033e-14 Identity = 55/199 (27.64%), Postives = 97/199 (48.74%), Query Frame = 1 Query: 64 MSKLQSDALREAISSIVQYSKETNK-RNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLV-THQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKK 651 MS++ D R+ I V+ +K K RNFT+++E+ + LK+ D ++ + RF V LPH +K+ ++ D E A ++GLD + Y F+A ++ +I R LG L K P +V ++E V + K TV+ QLK + VG M ++Q+ +N++ +N ++ L++ Sbjct: 1 MSRMAFD--RQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVISSAELEEIAKSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTMTNIEPIVEKLKKTVRIQLKDNPVVHAPVGTEKMSDEQLAENIEAVLNAIIGKLER 197 HSP 2 Score: 23.483 bits (49), Expect = 1.033e-14 Identity = 8/20 (40.00%), Postives = 14/20 (70.00%), Query Frame = 3 Query: 642 VEENWQNVRCLYLKSTMGPS 701 +E +R +Y+K+TMGP+ Sbjct: 195 LERGENQIRSVYVKTTMGPA 214 The following BLAST results are available for this feature:
BLAST of FC931384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 37
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931384 ID=FC931384; Name=FC931384; organism=Citrus clementina; type=EST; length=744bpback to top |