FC931385

Overview
NameFC931385
Unique NameFC931385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 8.525e-59
Identity = 112/148 (75.68%), Postives = 119/148 (80.41%), Query Frame = 1
Query:   43 MAGDKKIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 486
            M+   KIKIGINGFGRIGRLVARV L RDD+ELVAVNDPFISTDYMTYMFKYDSVHGQWK +E+KVKD  TLLFGEK V VFG RNPEEIPW +TG EYVVESTGVFT               VVI+APSKDAPMFVVGVNE EYKP+
Sbjct:    1 MSSTGKIKIGINGFGRIGRLVARVALLRDDIELVAVNDPFISTDYMTYMFKYDSVHGQWKKHEVKVKDSNTLLFGEKAVTVFGCRNPEEIPWGETGVEYVVESTGVFTDKEKAAAHIKGGAKKVVITAPSKDAPMFVVGVNEHEYKPD 148          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.454e-58
Identity = 110/143 (76.92%), Postives = 118/143 (82.52%), Query Frame = 1
Query:   58 KIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 486
            KIKIGINGFGRIGRLVARV L+RDDVELVAVNDPFI+TDYMTYMFKYDSVHGQWK++EL VKD  TLLFG+KPV VF  RNPEEIPWA TGA+ +VESTGVFT               V+ISAPSKDAPMFVVGVNE EYKPE
Sbjct:    4 KIKIGINGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELTVKDSNTLLFGQKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPE 146          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 7.217e-58
Identity = 110/148 (74.32%), Postives = 118/148 (79.73%), Query Frame = 1
Query:   43 MAGDKKIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 486
            M    KIKIGINGFGRIGRLVARV L RDD+ELV VNDPFISTDYM+YMFKYDSVHG+WKH+E+ VKD KTLLFGEK VAVFG RNPEEIPW + GAEYVVESTGVFT               VVISAPSKDAPMFVVGVNE +YK +
Sbjct:    1 MGSTGKIKIGINGFGRIGRLVARVALTRDDIELVGVNDPFISTDYMSYMFKYDSVHGKWKHHEVNVKDSKTLLFGEKSVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPSKDAPMFVVGVNEHQYKSD 148          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.231e-57
Identity = 110/134 (82.09%), Postives = 114/134 (85.07%), Query Frame = 1
Query:   85 GRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 486
            GRIGRLVARV LQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKH+ELKVKDEKTLLFGEK V VFG RNPEEIPWA+ GA++VVESTGVFT               VVISAPSKDAPMFVVGVNEKEYKPE
Sbjct:    1 GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHHELKVKDEKTLLFGEKSVRVFGIRNPEEIPWAEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPE 134          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.608e-57
Identity = 109/143 (76.22%), Postives = 119/143 (83.22%), Query Frame = 1
Query:   58 KIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 486
            K+K+GINGFGRIGRLVARV+LQRDD ELVAVNDPFISTDYMTYMFKYDSVHGQ K +E+K+KDEKTLLFGE PVAVFG RNPEEIPW + GA++VVESTGVFT               VVISAPSKDAPMFVVGVNE EYK +
Sbjct:    3 KVKVGINGFGRIGRLVARVILQRDDCELVAVNDPFISTDYMTYMFKYDSVHGQCKSHEIKLKDEKTLLFGETPVAVFGCRNPEEIPWGQAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSD 145          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 3.582e-57
Identity = 107/140 (76.43%), Postives = 116/140 (82.86%), Query Frame = 1
Query:   58 KIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            KIKIGINGFGRIGRLVARV LQ +DVELVAVNDPFI+TDYMTYMFKYD+VHGQWKH+++ +KD KTLLFGEKPV VFG RNPEEIPW + GAEYVVESTGVFT               VVISAPSKDAPMFVVGVNE +Y
Sbjct:    3 KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIALKDSKTLLFGEKPVTVFGIRNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKY 142          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 4.678e-57
Identity = 106/140 (75.71%), Postives = 117/140 (83.57%), Query Frame = 1
Query:   58 KIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            KIKIGINGFGRIGRLVARV LQ DDVELVAVNDPFI+T+YMTYMFKYD+VHG WKH+++K+KD+KTLLFGEKPV VFG RNPEEIPW + GA+YVVESTGVFT               VVISAPSKDAPMFVVGVNE +Y
Sbjct:    3 KIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTEYMTYMFKYDTVHGHWKHSDIKLKDDKTLLFGEKPVTVFGVRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKY 142          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 4.678e-57
Identity = 111/148 (75.00%), Postives = 119/148 (80.41%), Query Frame = 1
Query:   43 MAGDKKIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 486
            M    KIKIGINGFGRIGRLVARV LQRDD+ELVAVNDPFIST+ +T +FKYDSVHGQWK +E+KVKDEKTLLFGEK VAVFG RNPEEIPW + GAEYVVESTGVFT               VVISAPSKDAPMFVVGVNE EYK +
Sbjct:    1 MGSTGKIKIGINGFGRIGRLVARVALQRDDIELVAVNDPFISTESLTSLFKYDSVHGQWKKHEVKVKDEKTLLFGEKHVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSD 148          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 6.110e-57
Identity = 106/140 (75.71%), Postives = 116/140 (82.86%), Query Frame = 1
Query:   58 KIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            KIKIGINGFGRIGRLVARV LQ +DVELVAVNDPFI+TDYMTYMFKYD+VHGQWKH+++K+KD KTLL GEKPV VFG RNP+EIPWA+ GAEYVVESTGVFT               VVISAPSKDAPMFV GVNE +Y
Sbjct:    3 KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKY 142          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 6.110e-57
Identity = 106/140 (75.71%), Postives = 116/140 (82.86%), Query Frame = 1
Query:   58 KIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            KIKIGINGFGRIGRLVARV LQ +DVELVAVNDPFI+TDYMTYMFKYD+VHGQWKH+++K+KD KTLL GEKPV VFG RNP+EIPWA+ GAEYVVESTGVFT               VVISAPSKDAPMFV GVNE +Y
Sbjct:    3 KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKY 142          
The following BLAST results are available for this feature:
BLAST of FC931385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 301
Match NameE-valueIdentityDescription
G3PC_GINBI8.525e-5975.68Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PEA1.454e-5876.92Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY7.217e-5874.32Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TOBAC1.231e-5782.09Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR1.608e-5776.22Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PD_MAIZE3.582e-5776.43Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PX_HORVU4.678e-5775.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA4.678e-5775.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSJ6.110e-5775.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI6.110e-5775.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC34104E10EF PostHarvP1 Citrus clementina cDNA clone C34104E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931385 ID=FC931385; Name=FC931385; organism=Citrus clementina; type=EST; length=488bp
CGTTAACAAACCTTCACTACTTTCTCATTTTCGATAATATCAATGGCCGG
AGACAAGAAGATTAAGATCGGAATCAACGGTTTCGGAAGGATCGGCCGTT
TGGTTGCGAGAGTCGTACTCCAGAGGGATGATGTGGAGCTGGTGGCTGTC
AACGATCCTTTCATCTCCACTGATTACATGACATACATGTTTAAGTACGA
TAGTGTTCACGGTCAGTGGAAGCACAACGAGTTGAAGGTCAAGGACGAGA
AGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCGGATTCAGGAAC
CCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTATGTTGTGGAATC
AACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCACTTGAAGGGTG
GTGCCAAGAAGGTCGTTATCTCCGCCCCTAGCAAGGATGCTCCCATGTTT
GTTGTGGGCGTCAACGAGAAAGAATACAAGCCAGAGCT
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