FC931385

Overview
NameFC931385
Unique NameFC931385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P4_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caenorhabditis elegans GN=gpd-4 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.515e-31
Identity = 71/147 (48.30%), Postives = 91/147 (61.90%), Query Frame = 1
Query:   58 KIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE-------LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            K  +GINGFGRIGRLV R  +++D V++VAVNDPFI+ DYM Y+FKYDS HGQ+K          +  KD K+       + VF  ++P  I W    A++VVESTGVFT               V+ISAPS DAPM+VVGVN ++Y
Sbjct:    3 KANVGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHGQFKGTVTYDGDFLIVQKDGKS----SHKIKVFNSKDPAAIAWGSVKADFVVESTGVFTTKEKASAHLQGGAKKVIISAPSADAPMYVVGVNHEKY 145          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.515e-31
Identity = 71/147 (48.30%), Postives = 91/147 (61.90%), Query Frame = 1
Query:   58 KIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE-------LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            K  +GINGFGRIGRLV R  +++D V++VAVNDPFI+ DYM Y+FKYDS HGQ+K          +  KD K+       + VF  ++P  I W    A++VVESTGVFT               V+ISAPS DAPM+VVGVN ++Y
Sbjct:    3 KANVGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHGQFKGTVTYDGDFLIVQKDGKS----SHKIKVFNSKDPAAIAWGSVKADFVVESTGVFTTKEKASAHLQGGAKKVIISAPSADAPMYVVGVNHEKY 145          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3PT_RAT (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Rattus norvegicus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.979e-31
Identity = 69/143 (48.25%), Postives = 95/143 (66.43%), Query Frame = 1
Query:   55 KKIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 483
            K++ +GINGFGRIGRLV RV +++  V +VAVNDPFI  +YM YMFKYDS HG++K   ++ K+ + L+     + VF  + P+EIPW+  G  YVVE+TGV+                V+++APS DAPM V+GVNEK+Y P
Sbjct:   98 KELTVGINGFGRIGRLVLRVCMEKG-VRVVAVNDPFIDPEYMVYMFKYDSTHGRYK-GTVEHKNGR-LVVDNLEINVFQCKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVIVTAPSPDAPMLVMGVNEKDYNP 237          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.979e-31
Identity = 68/143 (47.55%), Postives = 96/143 (67.13%), Query Frame = 1
Query:   55 KKIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 483
            +++ +GINGFGRIGRLV R  +++  V++VAVNDPFI  +YM YMFKYDS HG++K   ++ ++ + L+     ++V+  + P++IPW   G+ YVVESTGV+                VVISAPS DAPMFV+GVNE +Y P
Sbjct:   74 RELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYK-GSVEFRNGQ-LVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNP 213          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.979e-31
Identity = 74/141 (52.48%), Postives = 90/141 (63.83%), Query Frame = 1
Query:   64 KIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 486
            KIGINGFGRIGRLV R  + +    +VAVNDPFI  +YM Y+FK+DS HG++K   +  +    ++ G+K + VF  R+P  I WA  GAEYVVESTGVFT               VVISAPS DAPMFV GVN   YKP+
Sbjct:    3 KIGINGFGRIGRLVLRAAIDKG-ASVVAVNDPFIDVNYMVYLFKFDSTHGRFK-GTVAAEGGFLVVNGQK-ITVFSERDPANINWASAGAEYVVESTGVFTTIEKASTHLKGGAKKVVISAPSADAPMFVCGVNLDAYKPD 140          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.979e-31
Identity = 69/142 (48.59%), Postives = 87/142 (61.27%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 486
            I+I INGFGRIGRLV R+ LQR D+E+VAVNDPFIS DY  YM KYDS HG++K       D+K ++     +A +  R+P  +PW     +  V+STGVF                VVI+APS  APMFVVGVN  +Y P+
Sbjct:    2 IRIAINGFGRIGRLVLRLALQRKDIEVVAVNDPFISNDYAAYMVKYDSTHGRYKGT--VSHDDKHIIIDGVKIATYQERDPANLPWGSLKIDVAVDSTGVFKELDTAQKHIDAGAKKVVITAPSSSAPMFVVGVNHTKYTPD 141          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.979e-31
Identity = 69/142 (48.59%), Postives = 90/142 (63.38%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 486
            + +GINGFGRIGRLV R  LQ   + +VAVNDPF+  +YM Y+FKYDSVHG+++  +++ KD K ++ G K +A F  R P  I WA  GAEY+VESTGVF                VVI+AP    P +VVGVN  +Y P+
Sbjct:    2 VNVGINGFGRIGRLVLRNALQMQILTVVAVNDPFLDVEYMAYLFKYDSVHGRYQ-GKVETKDGKLIIDGHK-IAAFAEREPANIKWADCGAEYIVESTGVFKTEELAKEHLKGGAKKVVITAPGSGVPTYVVGVNLDKYDPK 141          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3PT_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Mus musculus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.376e-31
Identity = 67/143 (46.85%), Postives = 92/143 (64.34%), Query Frame = 1
Query:   55 KKIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 483
            +++ +GINGFGRIGRLV RV +++  + +VAVNDPFI  +YM YMFKYDS HG++K N      +  L+     +  +  ++P+EIPW+  G  YVVE TGV+                VV++APS DAPMFV+GVNEK+Y P
Sbjct:  106 RELTVGINGFGRIGRLVLRVCMEKG-IRVVAVNDPFIDPEYMVYMFKYDSTHGRYKGNVEHKNGQ--LVVDNLEINTYQCKDPKEIPWSSIGNPYVVECTGVYLSIEAASAHISSGARRVVVTAPSPDAPMFVMGVNEKDYNP 245          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 3.376e-31
Identity = 72/141 (51.06%), Postives = 90/141 (63.83%), Query Frame = 1
Query:   64 KIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 486
            KIGINGFGRIGRLV R  + +    +VAVNDPFI  +YM Y+FK+DS HG++K   +  +    ++ G+K + VF  R+P  I WA  GAEY+VESTGVFT               V+ISAPS DAPMFV GVN   YKP+
Sbjct:    3 KIGINGFGRIGRLVLRAAIDKG-ANVVAVNDPFIDVNYMVYLFKFDSTHGRFK-GTVAAEGGFLVVNGQK-ITVFSERDPANINWASAGAEYIVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYKPD 140          
BLAST of FC931385 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 5.758e-31
Identity = 73/167 (43.71%), Postives = 93/167 (55.69%), Query Frame = 1
Query:   61 IKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK-------------------------HNELK--VKDEK-TLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 477
            +K+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMFKYDS HG++K                         H + K  VK E   L+     + +F  R+P +I W   GAEYVVESTGVFT               V+ISAPS+DAPMFV+GVN ++Y
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFKYDSTHGKFKVDIVAINDPFIDLNYMVYMFKYDSTHGKFKGTVKAENGKLVINGHAITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSRDAPMFVMGVNHEKY 168          
The following BLAST results are available for this feature:
BLAST of FC931385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 301
Match NameE-valueIdentityDescription
G3P4_CAEEL1.515e-3148.30Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caen... [more]
G3P1_CAEEL1.515e-3148.30Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]
G3PT_RAT1.979e-3148.25Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PT_HUMAN1.979e-3147.55Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P2_DROPS1.979e-3152.48Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P1_YEAST1.979e-3148.59Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P1_AGABI1.979e-3148.59Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]
G3PT_MOUSE3.376e-3146.85Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P2_DROME3.376e-3151.06Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P1_JACOR5.758e-3143.71Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]

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Properties
Property NameValue
Genbank descriptionC34104E10EF PostHarvP1 Citrus clementina cDNA clone C34104E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931385 ID=FC931385; Name=FC931385; organism=Citrus clementina; type=EST; length=488bp
CGTTAACAAACCTTCACTACTTTCTCATTTTCGATAATATCAATGGCCGG
AGACAAGAAGATTAAGATCGGAATCAACGGTTTCGGAAGGATCGGCCGTT
TGGTTGCGAGAGTCGTACTCCAGAGGGATGATGTGGAGCTGGTGGCTGTC
AACGATCCTTTCATCTCCACTGATTACATGACATACATGTTTAAGTACGA
TAGTGTTCACGGTCAGTGGAAGCACAACGAGTTGAAGGTCAAGGACGAGA
AGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCGGATTCAGGAAC
CCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTATGTTGTGGAATC
AACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCACTTGAAGGGTG
GTGCCAAGAAGGTCGTTATCTCCGCCCCTAGCAAGGATGCTCCCATGTTT
GTTGTGGGCGTCAACGAGAAAGAATACAAGCCAGAGCT
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